View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_high_32 (Length: 257)
Name: NF19762_high_32
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 2874311 - 2874087
Alignment:
| Q |
18 |
acatttgcctgagactcgtttctcgatgtaatatggataatttgagtgtttaagatttatatttatatgaatgatttgtgaccatgttttcctatacaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2874311 |
acatttgcctgagactcgtttctcgatgtaatatggataatttgagtgtttaagatttatat------gaatgatttgtgaccatgttttcctatacaaa |
2874218 |
T |
|
| Q |
118 |
actattatatatactaataagaaataactgcaaataacagtcacnnnnnnnctttcgacgtgtatccagctatgttcctcagactcttgacaaactccca |
217 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2874217 |
actattatatatactaatacgaaataactgcaattaacaatcacaaaaaaactttcgacgtgtatccagctatgttcctcaaactcttgacaaactccca |
2874118 |
T |
|
| Q |
218 |
cgcgtcttcgacgtctttatcttgtctctgc |
248 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2874117 |
cgcgtcttcgacgtctttatcttgtctctgc |
2874087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 18104003 - 18103950
Alignment:
| Q |
18 |
acatttgcctgagactcgtttctcgatgtaatatggataatttgagtgtttaag |
71 |
Q |
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||||||| || |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18104003 |
acatttgtctaagactcgtttctcgttgtaatatggataatttgagtgtttaag |
18103950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 25969384 - 25969523
Alignment:
| Q |
18 |
acatttgcctgagactcgtttctcgatgtaatatggataatttgagtgtttaagatttatatttatatgaatgatttgtgaccatgttttcctatacaaa |
117 |
Q |
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|||||| ||| |||||||||||||| ||||| ||||||||||||||||||||| ||| | | |||||||||||||| | ||||||||||| | |
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| T |
25969384 |
acattttcctaagactcgtttctcgctgtaacttggataatttgagtgtttaag------gtttctgtaaatgatttgtgacccttatttcctatacaga |
25969477 |
T |
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| Q |
118 |
actattatatatactaa-taag-aaataactgcaaataacagtcac |
161 |
Q |
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|| | |||||| ||||| |||| ||||||||| ||||||||||||| |
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| T |
25969478 |
accactatatacactaattaagaaaataactgaaaataacagtcac |
25969523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 18439323 - 18439266
Alignment:
| Q |
104 |
ttttcctatacaaaactattatatatactaataagaaataactgcaaataacagtcac |
161 |
Q |
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|||||||||||||||||| ||||||||||| || || |||||| ||||||||||||| |
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| T |
18439323 |
ttttcctatacaaaactactatatatactattattaagtaactgaaaataacagtcac |
18439266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 18450181 - 18450124
Alignment:
| Q |
104 |
ttttcctatacaaaactattatatatactaataagaaataactgcaaataacagtcac |
161 |
Q |
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|
|||||||||||||||||| ||||||||||| || || |||||| ||||||||||||| |
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|
| T |
18450181 |
ttttcctatacaaaactactatatatactattattaagtaactgaaaataacagtcac |
18450124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 18455274 - 18455217
Alignment:
| Q |
104 |
ttttcctatacaaaactattatatatactaataagaaataactgcaaataacagtcac |
161 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || || |||||| ||||||||||||| |
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|
| T |
18455274 |
ttttcctatacaaaactactatatatactattattaagtaactgaaaataacagtcac |
18455217 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 246
Target Start/End: Complemental strand, 23996372 - 23996237
Alignment:
| Q |
112 |
tacaaaactattatatatactaataagaaataactgcaaataacagtcacnnnnnnn-ctttcgacgtgtatccagctatgttcctcagactcttgacaa |
210 |
Q |
| |
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|||||||||| || ||||||| |||||||||||||||||||||| ||| ||||||||| ||||| |||||||| |||| ||||||||||| |
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| T |
23996372 |
tacaaaactaccatttatactagtaagaaataactgcaaataacaatcataaacaaagctttcgacgcgtatcttgctatgtttctcaaactcttgacaa |
23996273 |
T |
|
| Q |
211 |
actcccacgcgtcttcgacgtctttatcttgtctct |
246 |
Q |
| |
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|||| ||| ||||||||| |||| |||| |||||| |
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| T |
23996272 |
gctccaacgtgtcttcgacatcttgatctcgtctct |
23996237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 21412707 - 21412779
Alignment:
| Q |
85 |
tgaatgatttgtgaccatgttttcctatacaaaactattatatatactaataagaaataactgcaaataacagt |
158 |
Q |
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|||||||||||||||| | |||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
21412707 |
tgaatgatttgtgacctttatttcttatacaaaactatta-atatacttgcaagaaataactacaaataacagt |
21412779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 15768348 - 15768399
Alignment:
| Q |
195 |
ctcagactcttgacaaactcccacgcgtcttcgacgtctttatcttgtctct |
246 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||| |||| ||||||||||| |
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| T |
15768348 |
ctcagcctcttgacaagctcccacgtgtcttcgacatcttgatcttgtctct |
15768399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 15762463 - 15762512
Alignment:
| Q |
105 |
tttcctatacaaaactattatatatac-taataagaaataactgcaaata |
153 |
Q |
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||||||| |||||||||||||||| || || ||||||||||||||||||| |
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| T |
15762463 |
tttcctacacaaaactattatatacacttagtaagaaataactgcaaata |
15762512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 23022965 - 23022920
Alignment:
| Q |
116 |
aaactattatatatactaataagaaataactgcaaataacagtcac |
161 |
Q |
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|||||||||||||||||| | ||||||||| |||||||||||||| |
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|
| T |
23022965 |
aaactattatatatactagcatgaaataactacaaataacagtcac |
23022920 |
T |
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