View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_high_34 (Length: 249)
Name: NF19762_high_34
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 37712711 - 37712479
Alignment:
| Q |
1 |
ctagctaatagtctagtagagatagagtactaataatttgatattttttcagcaaaattttaacataaaatactacaatagcagacgaataaataatnnn |
100 |
Q |
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| T |
37712711 |
ctagctaatagtctagtagagatagagtactaataatttgatattttttcagcaaaattttaacataaaatactacaatagcagacgaataaataataaa |
37712612 |
T |
|
| Q |
101 |
nnnnncgagcattgactagtagatagcccatatcgttttccagtttgcttagctcatagcaaaacttcatgactgtgagtgtatcaagaaaatagaaaac |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37712611 |
aaaa-cgagcattgactagtagttagcccatatcgttttccagtttgcttagctcatagcaaaacttcatgactgtgagtgtatcaagaaaatagaaaac |
37712513 |
T |
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| Q |
201 |
ctcatgaagtgtatgtatccactactactccaat |
234 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
37712512 |
ctcatgaaatgtatgtatccactactactccaat |
37712479 |
T |
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