View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_high_39 (Length: 236)
Name: NF19762_high_39
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_high_39 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 37713050 - 37712830
Alignment:
| Q |
16 |
gtttatatagttggtaaacatatctccatgtggtttcaatttttgacaccatatcctcatctaatttttaaaaattgaaccagggaaatctttagattat |
115 |
Q |
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| T |
37713050 |
gtttatatagttggtaaacatatctccatgtggtttcaatttttgacaccatatcctcatctaatttttaaaaattgaaccagggaaatctttagattac |
37712951 |
T |
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| Q |
116 |
ggtgcaattggttgaatcggataatgaaataagggttttgctaacaagtatttttatgacactctttaaacattctcatttaagtaataattttttaata |
215 |
Q |
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| T |
37712950 |
ggtgcaattggttgaatcggataatgaaataagggttttgctaacaagtatttttatgacactctttaaacattcttatttaagtaataattttttaata |
37712851 |
T |
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| Q |
216 |
atgtcaaacatttcaattcct |
236 |
Q |
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| T |
37712850 |
atgtcaaacatttcaattcct |
37712830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 8333666 - 8333626
Alignment:
| Q |
194 |
tttaagtaataattttttaataatgtcaaacatttcaattc |
234 |
Q |
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| T |
8333666 |
tttaagtaattattctttaataaagtcaaacatttcaattc |
8333626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 34861323 - 34861265
Alignment:
| Q |
175 |
cactctttaaacattctcatttaagtaataattttttaataatgtcaaacatttcaatt |
233 |
Q |
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| T |
34861323 |
cactctttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaatt |
34861265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 9004994 - 9005045
Alignment:
| Q |
174 |
acactctttaaacattctcatttaagtaataattttttaataatgtcaaaca |
225 |
Q |
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| T |
9004994 |
acactctttaaatattctaaattaagtaattattttttaaaaatgtcaaaca |
9005045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 50617492 - 50617549
Alignment:
| Q |
176 |
actctttaaacattctcatttaagtaataattttttaataatgtcaaacatttcaatt |
233 |
Q |
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| T |
50617492 |
actctttaaacattataaattaagtaattatttttttaaaatgtcaaacttttcaatt |
50617549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 44452155 - 44452095
Alignment:
| Q |
173 |
gacactctttaaacattctcatttaagtaataattttttaataatgtcaaacatttcaatt |
233 |
Q |
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| T |
44452155 |
gacactctttaaacattctaaattaagtaattattatttaaaaatatcaaaagtttcaatt |
44452095 |
T |
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