View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19762_high_40 (Length: 236)

Name: NF19762_high_40
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19762_high_40
NF19762_high_40
[»] chr2 (2 HSPs)
chr2 (2-223)||(16929814-16930036)
chr2 (2-223)||(16987302-16987524)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 16930036 - 16929814
Alignment:
Q  2 gaagaatatggtgaaagagaaagaagaaaaaataaatggcaggcagaccataaaatcaatgttcttctctcaatcttgtcaaatcaacaaaatccataat 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16930036 gaagaaaatggtgaaagagaaagaagaaaaaataaatggcaggcagaccataaaatcaatgttcttctctcaatcttgtcaaatcaacaaaatccataat 16929937  T
Q  102 ggtttgtttgatcttgttgttgttgattgattgttatggattttatttnnnnnnnnttac-nnnnnnnnctaggtttgtggtgatgaaggtatgaagatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||        ||||         |||||||||||||||||||||||||||||||    
T  16929936 ggtttgtttgatcttgttgttgttgattgattgttatggattttgtttaaaaaaaattactttttttttctaggtttgtggtgatgaaggtatgaagatg 16929837  T
Q  201 atcaagagaatgagagatgatga 223  Q
    |||||||||||||||||||||||    
T  16929836 atcaagagaatgagagatgatga 16929814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 16987524 - 16987302
Alignment:
Q  2 gaagaatatggtgaaagagaaagaagaaaaaataaatggcaggcagaccataaaatcaatgttcttctctcaatcttgtcaaatcaacaaaatccataat 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16987524 gaagaaaatggtgaaagagaaagaagaaaaaataaatggcaggcagaccataaaatcaatgttcttctctcaatcttgtcaaatcaacaaaatccataat 16987425  T
Q  102 ggtttgtttgatcttgttgttgttgattgattgttatggattttatttnnnnnnnnttac-nnnnnnnnctaggtttgtggtgatgaaggtatgaagatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||        ||||         |||||||||||||||||||||||||||||||    
T  16987424 ggtttgtttgatcttgttgttgttgattgattgttatggattttgtttaaaaaaaattactttttttttctaggtttgtggtgatgaaggtatgaagatg 16987325  T
Q  201 atcaagagaatgagagatgatga 223  Q
    |||||||||||||||||||||||    
T  16987324 atcaagagaatgagagatgatga 16987302  T

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