View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_high_44 (Length: 221)
Name: NF19762_high_44
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5874893 - 5875112
Alignment:
| Q |
1 |
tcataacgatcaatttaagttttgtttatacaatatatatggcttaatttcgttattattagcttaatcacattattattagtttgtggggtttgaattt |
100 |
Q |
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| T |
5874893 |
tcataacgatcaatttaagttttgtttatacaatacatatggcttaatttcgttattattagcttaattacattattattagtttgtggggtttgaattt |
5874992 |
T |
|
| Q |
101 |
tcttaatcgcattatttttagtttaatttcatggagcatgattgttgttgtagttgctggtggtggtgagtgggtggtatcgtttgtgatggaggttgaa |
200 |
Q |
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| T |
5874993 |
gcttaatcacattatttttagtttaatttcatggagcatgattgttgttgtagttgctggtggtggtgagtgggtggcatcgtttgtgatggaggttgaa |
5875092 |
T |
|
| Q |
201 |
gaaaatggtgaaagagaaag |
220 |
Q |
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|||||||||||||||||||| |
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| T |
5875093 |
gaaaatggtgaaagagaaag |
5875112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 31910705 - 31910671
Alignment:
| Q |
186 |
gtgatggaggttgaagaaaatggtgaaagagaaag |
220 |
Q |
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| T |
31910705 |
gtgatggaggttgaagaaaatggtgaaagagaaag |
31910671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 32449468 - 32449434
Alignment:
| Q |
186 |
gtgatggaggttgaagaaaatggtgaaagagaaag |
220 |
Q |
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| T |
32449468 |
gtgatggaggttgaagaaaatggtgaaagagaaag |
32449434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 29007095 - 29007128
Alignment:
| Q |
187 |
tgatggaggttgaagaaaatggtgaaagagaaag |
220 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29007095 |
tgatggaggttgaagaaaatggtgaaagagaaag |
29007128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 29006499 - 29006465
Alignment:
| Q |
186 |
gtgatggaggttgaagaaaatggtgaaagagaaag |
220 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
29006499 |
gtgatggaggttgaagaagatggtgaaagagaaag |
29006465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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