View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19762_high_46 (Length: 219)

Name: NF19762_high_46
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19762_high_46
NF19762_high_46
[»] chr7 (18 HSPs)
chr7 (15-201)||(18260809-18260996)
chr7 (44-120)||(24371451-24371527)
chr7 (42-126)||(35809053-35809137)
chr7 (46-120)||(22032729-22032803)
chr7 (42-120)||(28004547-28004625)
chr7 (44-113)||(35246637-35246706)
chr7 (44-120)||(22575551-22575627)
chr7 (46-121)||(25536245-25536320)
chr7 (46-99)||(19913912-19913965)
chr7 (44-120)||(14676004-14676079)
chr7 (45-101)||(20888695-20888751)
chr7 (44-120)||(23137207-23137283)
chr7 (46-98)||(47654481-47654533)
chr7 (45-120)||(16958782-16958857)
chr7 (44-99)||(29390616-29390671)
chr7 (42-100)||(33204956-33205014)
chr7 (60-120)||(991481-991541)
chr7 (56-100)||(991621-991664)
[»] chr8 (23 HSPs)
chr8 (41-126)||(30973951-30974036)
chr8 (44-120)||(37410957-37411033)
chr8 (43-126)||(19925427-19925510)
chr8 (46-126)||(14942391-14942471)
chr8 (44-120)||(38195452-38195528)
chr8 (45-120)||(2563324-2563399)
chr8 (42-132)||(2019682-2019772)
chr8 (42-120)||(42363361-42363439)
chr8 (57-126)||(43577199-43577268)
chr8 (44-120)||(42102072-42102148)
chr8 (42-113)||(13131393-13131464)
chr8 (51-118)||(36907695-36907762)
chr8 (44-101)||(38338914-38338971)
chr8 (56-120)||(12607057-12607121)
chr8 (51-100)||(8752928-8752978)
chr8 (56-98)||(11988320-11988361)
chr8 (66-104)||(19925675-19925713)
chr8 (66-100)||(29713299-29713333)
chr8 (56-101)||(37410834-37410878)
chr8 (44-120)||(3664101-3664177)
chr8 (56-100)||(12607201-12607244)
chr8 (56-100)||(35055543-35055586)
chr8 (56-100)||(42102228-42102271)
[»] chr3 (15 HSPs)
chr3 (42-125)||(4974274-4974357)
chr3 (42-120)||(20894466-20894544)
chr3 (45-120)||(3645269-3645344)
chr3 (42-121)||(28623278-28623357)
chr3 (51-120)||(4257346-4257415)
chr3 (46-126)||(10448741-10448821)
chr3 (42-101)||(24841451-24841510)
chr3 (57-120)||(29614172-29614235)
chr3 (45-126)||(2086730-2086811)
chr3 (42-126)||(40581116-40581200)
chr3 (84-126)||(38524093-38524135)
chr3 (56-101)||(3645423-3645467)
chr3 (56-101)||(29614314-29614358)
chr3 (57-126)||(34707752-34707821)
chr3 (57-113)||(29830822-29830878)
[»] chr6 (10 HSPs)
chr6 (42-126)||(715964-716048)
chr6 (46-126)||(6632626-6632706)
chr6 (46-120)||(10184374-10184448)
chr6 (51-120)||(4808544-4808613)
chr6 (44-121)||(32615458-32615535)
chr6 (56-119)||(1468153-1468216)
chr6 (46-100)||(7267904-7267958)
chr6 (42-120)||(8011091-8011169)
chr6 (58-120)||(34223570-34223632)
chr6 (57-101)||(29052453-29052496)
[»] chr5 (38 HSPs)
chr5 (57-113)||(15413970-15414026)
chr5 (51-121)||(5203477-5203547)
chr5 (56-126)||(43318980-43319050)
chr5 (44-120)||(15122510-15122586)
chr5 (44-120)||(15709936-15710012)
chr5 (45-120)||(33757054-33757129)
chr5 (42-120)||(17668363-17668441)
chr5 (57-126)||(11991283-11991352)
chr5 (44-113)||(33667444-33667513)
chr5 (41-100)||(29922094-29922153)
chr5 (56-126)||(22201975-22202045)
chr5 (42-120)||(26002960-26003038)
chr5 (58-120)||(40416017-40416079)
chr5 (56-113)||(341967-342024)
chr5 (56-101)||(26003118-26003162)
chr5 (43-119)||(13164797-13164872)
chr5 (44-100)||(13739351-13739407)
chr5 (48-124)||(17128247-17128323)
chr5 (58-113)||(4728825-4728880)
chr5 (42-121)||(16721990-16722069)
chr5 (45-120)||(20458602-20458677)
chr5 (57-120)||(25332283-25332346)
chr5 (46-101)||(38498559-38498614)
chr5 (58-120)||(2531305-2531367)
chr5 (56-94)||(9477285-9477323)
chr5 (66-132)||(10537252-10537318)
chr5 (58-132)||(15363991-15364065)
chr5 (46-96)||(41125671-41125721)
chr5 (56-97)||(33667314-33667354)
chr5 (56-101)||(38461201-38461245)
chr5 (51-100)||(40452392-40452441)
chr5 (51-99)||(6008345-6008393)
chr5 (46-94)||(6150919-6150967)
chr5 (56-100)||(15122659-15122702)
chr5 (58-126)||(29922228-29922296)
chr5 (56-100)||(33757209-33757252)
chr5 (56-100)||(41059709-41059753)
chr5 (56-100)||(42558637-42558681)
[»] chr4 (33 HSPs)
chr4 (42-126)||(52700583-52700666)
chr4 (42-113)||(10796349-10796420)
chr4 (42-120)||(15184510-15184588)
chr4 (46-120)||(2702760-2702834)
chr4 (42-120)||(9201614-9201692)
chr4 (51-121)||(46176022-46176092)
chr4 (44-101)||(22823761-22823818)
chr4 (57-113)||(10794961-10795017)
chr4 (51-119)||(19414101-19414169)
chr4 (44-100)||(43699548-43699604)
chr4 (57-101)||(54593644-54593688)
chr4 (45-120)||(22117320-22117395)
chr4 (51-101)||(4331451-4331501)
chr4 (58-120)||(4603376-4603438)
chr4 (43-93)||(9153654-9153704)
chr4 (56-101)||(9201771-9201815)
chr4 (44-121)||(47202791-47202868)
chr4 (44-120)||(42617274-42617350)
chr4 (59-130)||(18424312-18424383)
chr4 (46-113)||(29877606-29877673)
chr4 (44-99)||(34633364-34633419)
chr4 (46-100)||(42611933-42611987)
chr4 (66-100)||(46175909-46175943)
chr4 (42-100)||(48591330-48591388)
chr4 (57-99)||(52700465-52700506)
chr4 (44-101)||(7673418-7673475)
chr4 (56-121)||(22303073-22303138)
chr4 (66-99)||(31736452-31736485)
chr4 (56-116)||(9319034-9319093)
chr4 (57-89)||(12022999-12023031)
chr4 (56-100)||(15179939-15179982)
chr4 (44-100)||(38345731-38345786)
chr4 (57-113)||(43415341-43415397)
[»] chr2 (22 HSPs)
chr2 (44-120)||(40301317-40301393)
chr2 (42-120)||(32522090-32522168)
chr2 (42-120)||(446415-446493)
chr2 (46-120)||(32366117-32366191)
chr2 (58-113)||(16108515-16108570)
chr2 (43-126)||(24438983-24439066)
chr2 (44-113)||(19683539-19683608)
chr2 (83-120)||(43796934-43796971)
chr2 (46-126)||(15155780-15155860)
chr2 (56-120)||(35515525-35515589)
chr2 (57-120)||(2757115-2757177)
chr2 (46-121)||(22898400-22898475)
chr2 (66-101)||(26440214-26440249)
chr2 (42-100)||(4533444-4533502)
chr2 (43-109)||(24007904-24007970)
chr2 (42-120)||(27881042-27881120)
chr2 (45-98)||(2401688-2401741)
chr2 (57-126)||(5903511-5903580)
chr2 (56-101)||(22422090-22422134)
chr2 (57-126)||(33321442-33321511)
chr2 (40-120)||(735880-735960)
chr2 (44-100)||(12442924-12442980)
[»] chr1 (23 HSPs)
chr1 (42-120)||(16225472-16225550)
chr1 (44-120)||(15791349-15791425)
chr1 (42-120)||(17348843-17348921)
chr1 (46-98)||(49971218-49971270)
chr1 (56-95)||(12256584-12256623)
chr1 (57-120)||(37148138-37148201)
chr1 (57-120)||(37156963-37157026)
chr1 (58-120)||(15631883-15631945)
chr1 (42-120)||(29333381-29333458)
chr1 (43-120)||(15235205-15235282)
chr1 (56-113)||(22088463-22088520)
chr1 (51-120)||(32497316-32497385)
chr1 (44-101)||(42367071-42367128)
chr1 (56-120)||(5243448-5243512)
chr1 (56-120)||(20169242-20169305)
chr1 (45-120)||(5347121-5347196)
chr1 (45-120)||(17628469-17628544)
chr1 (57-100)||(37329333-37329376)
chr1 (46-100)||(47413494-47413548)
chr1 (56-101)||(15235082-15235126)
chr1 (44-100)||(391133-391189)
chr1 (56-100)||(17814312-17814355)
chr1 (43-99)||(35897526-35897582)
[»] scaffold1088 (1 HSPs)
scaffold1088 (57-120)||(1272-1335)
[»] scaffold0048 (2 HSPs)
scaffold0048 (43-120)||(59232-59309)
scaffold0048 (57-101)||(59388-59431)
[»] scaffold1130 (1 HSPs)
scaffold1130 (58-121)||(2228-2290)
[»] scaffold0006 (2 HSPs)
scaffold0006 (43-120)||(279036-279113)
scaffold0006 (56-120)||(40722-40785)
[»] scaffold1367 (1 HSPs)
scaffold1367 (56-100)||(1180-1223)
[»] scaffold0100 (1 HSPs)
scaffold0100 (56-100)||(38374-38417)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 18260996 - 18260809
Alignment:
Q  15 aaaatctaaatatggccttaagg-taatgtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18260996 aaaatctaaatatggccttaaggctaatgtccgttttgatttgcttattttagtgcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 18260897  T
Q  114 gttataaacttgtgaagatgtggacacttcacaaggattgcaaagatttcataaaggattgctggaatgatagagtgattggctgcac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18260896 gttataaacttgtgaagatgtggacacttcacaaggattgcaaagatttcataaaggattgctggaatgatagagtgattggctgcac 18260809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 24371527 - 24371451
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| |||| ||||||||||||||||||  |||||| |||||| |||||||||||| ||||||||||| ||||||    
T  24371527 ccgtttggattagcttattttagagcttatataaaacagcttatgcaaataaataagttttaatgtattatttataa 24371451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 35809053 - 35809137
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||||||| |||| ||||||||||||||||||  ||| || |||||| ||||||||||| |||||||||||| |||||| |||||    
T  35809053 gtccgtttggattggcttattttagagcttatacaaagcatcttatgcaaataaataagcattaatgtattatttataagcttgt 35809137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 22032729 - 22032803
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| || || |||||||| ||||||    
T  22032729 gtttggattagcttattttagagcttatgtaaaacaacttatgcaaataaatatgtttttatgtattatttataa 22032803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 28004547 - 28004625
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||| ||| |||| ||||||||||||||||||  |||||| |||||| |||||||||||| || |||||||| ||||||    
T  28004547 gtccatttggattagcttattttagagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataa 28004625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 35246637 - 35246706
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    |||||| |||| |||||||||||||| |||  ||||||||||||| |||||||||||| || ||||||||    
T  35246637 ccgtttggattagcttattttagagcctatataaaacaacttatgcaaataaataagtttttatgtatta 35246706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 22575551 - 22575627
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| ||||  |||||||||||||||||| |||||| |||||| ||||||||| || || |||||||| ||||||    
T  22575551 ccgtttggattaacttattttagagcttatgtaaaacatcttatgcaaataaatacgtttttatgtattatttataa 22575627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 25536245 - 25536320
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaa 121  Q
    |||| |||| ||||||||||||| ||||  |||||| |||| |||||||||||||| || |||||||| |||||||    
T  25536245 gtttggattagcttattttagagtttatataaaacagcttacgtaaataaataagtttttatgtattatttataaa 25536320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 19913912 - 19913965
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataa 99  Q
    |||| |||| ||||||||||||||||||  |||| |||||||||||||||||||    
T  19913912 gtttggattagcttattttagagcttatataaaataacttatgtaaataaataa 19913965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 14676079 - 14676004
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| |||| |||||||| |||||||||  ||||||||||||| ||||||||| || || |||||||| ||||||    
T  14676079 ccgtttggattagcttattt-agagcttatataaaacaacttatgcaaataaataggtgtttatgtattatttataa 14676004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 20888751 - 20888695
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    ||||| ||||| |||||||| |||||||||||||| |||||||| |||||| |||||    
T  20888751 cgtttggatttacttatttttgagcttatgaaaaataacttatgcaaataagtaagt 20888695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 23137283 - 23137207
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||||| ||||||||||||||||||  |||| |||||||  ||| |||||| | || |||||||| ||||||    
T  23137283 ccgttttgattagcttattttagagcttatataaaataacttatacaaacaaataaatttttatgtattatttataa 23137207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 47654533 - 47654481
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaata 98  Q
    |||| |||| |||||||||||||||| || |||||| ||||||||||||||||    
T  47654533 gtttggattagcttattttagagcttttgcaaaacagcttatgtaaataaata 47654481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 16958782 - 16958857
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||| |||| ||||||||| ||||||||  ||||||||||||| || ||||||| | || |||||||| ||||||    
T  16958782 cgtttggattagcttatttttgagcttatataaaacaacttatgcaactaaataaatttttatgtattatttataa 16958857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 29390671 - 29390616
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataa 99  Q
    |||||| |||| ||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  29390671 ccgtttggattggcttatttttgagtttatggaaaacaacttatgcaaataaataa 29390616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 33205014 - 33204956
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||||| |||| |||||||||  ||||||||||||| | |||||| |||||||||||    
T  33205014 gtccgtttggattggcttattttttagcttatgaaaaatatcttatgcaaataaataag 33204956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 991481 - 991541
Alignment:
Q  60 attttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||||||||| ||||||| |||||| | |||||||||| || ||| |||| ||||||    
T  991481 attttagagcttataaaaaacaccttatgcacataaataagtttttatgcattatttataa 991541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 991664 - 991621
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||    
T  991664 gcttatttt-gagcttatgaaaaatagcttatgtaaataaataag 991621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 30973951 - 30974036
Alignment:
Q  41 tgtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    ||||||||| |||| ||||||||||||||||||| ||| || |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  30973951 tgtccgtttggattggcttattttagagcttatgcaaagcagcttatgtaaataaagaagcattaatgtattatttataaatttgt 30974036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 37411033 - 37410957
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||||| ||||||||||||||||||  ||||||  |||||||||||||||||| || |||||||| ||||||    
T  37411033 ccgttttgattagcttattttagagcttatataaaacagtttatgtaaataaataagtttttatgtattatttataa 37410957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 19925510 - 19925427
Alignment:
Q  43 tccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    ||||||| ||||  |||||||||||||||||| | ||||  ||||| ||||||||||| |||||||||||| ||||||||||||    
T  19925510 tccgtttggattgacttattttagagcttatgcataacagtttatgcaaataaataagcattaatgtattatttataaacttgt 19925427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 14942391 - 14942471
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||  ||  ||||||| |||||| |||||    
T  14942391 gtttggattggcttattttagagcttatgtaaaacaacttatgtatataaataagcttttgtgtattatttataagcttgt 14942471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 38195452 - 38195528
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| |||| ||||||||||||||||||  ||||||||||||| |||||||||||| || || ||||| ||||||    
T  38195452 ccgtttggattagcttattttagagcttatataaaacaacttatgcaaataaataagtttttatatattatttataa 38195528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 2563324 - 2563399
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||| |||| ||||||||||||| ||||| |||| || ||||| |||||||||| ||||||||||||| ||||||    
T  2563324 cgtttggattggcttattttagaggttatgtaaaataatttatgcaaataaataaatattaatgtattatttataa 2563399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 2019772 - 2019682
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgtgaagat 132  Q
    |||||||| ||||  |||||||||||||||||| |||||| |||||| ||||||||||||  | |||||||| ||| || ||||| |||||    
T  2019772 gtccgtttggattgacttattttagagcttatgcaaaacatcttatgcaaataaataagtcattatgtattatttacaagcttgttaagat 2019682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 42363439 - 42363361
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| |||| ||||||||||||||||||  |||| | |||||| |||||||||||| || |||||||| ||||||    
T  42363439 gtccgtttggattagcttattttagagcttatataaaatagcttatgcaaataaataagtttttatgtattatttataa 42363361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 43577199 - 43577268
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||||||||||||||||| |||| |  ||||| |||||||||| ||||||||||||| ||||||| ||||    
T  43577199 cttattttagagcttatgcaaaatagtttatgcaaataaataaatattaatgtattatttataaatttgt 43577268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 42102072 - 42102148
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| ||||  |||||||||||||||||  |||||| |||||| |||||||||||| || |||||||| ||||||    
T  42102072 ccgtttggattaacttattttagagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataa 42102148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 13131393 - 13131464
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    |||||||| ||||||||||||||  |||||||| ||||||| ||||| |||||||||||  || ||||||||    
T  13131393 gtccgtttggatttgcttattttttagcttatgcaaaacaaattatgcaaataaataagcttttatgtatta 13131464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 36907762 - 36907695
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttat 118  Q
    |||| ||||||||||||||||||| ||| ||  ||||| ||||||| |||||||||||||||| ||||    
T  36907762 gattggcttattttagagcttatgcaaagcagtttatgcaaataaagaagtattaatgtattatttat 36907695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 38338971 - 38338914
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||||| |||| ||||||||||||||||||  |||||| |||||| ||||||||||||    
T  38338971 ccgtttggattagcttattttagagcttatataaaacagcttatgcaaataaataagt 38338914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 12607057 - 12607121
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||||||||||||  |||||| | |||| |||||||||||| || |||||||| ||||||    
T  12607057 gcttattttagagcttatataaaacagcatatgcaaataaataagtttttatgtattatttataa 12607121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 8752978 - 8752928
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaactt-atgtaaataaataag 100  Q
    ||||| |||||||| |||||||||||||| ||||| |||||||||||||||    
T  8752978 gatttacttatttttgagcttatgaaaaataacttaatgtaaataaataag 8752928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 11988361 - 11988320
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaata 98  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  11988361 gcttatttt-gagcttatgaaaaataacttatgtaaataaata 11988320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 19925713 - 19925675
Alignment:
Q  66 gagcttatgaaaaacaacttatgtaaataaataagtatt 104  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  19925713 gagcttatgaaaaatagcttatgtaaataaataagtatt 19925675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 29713333 - 29713299
Alignment:
Q  66 gagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||||||||||| ||||||||||||||||||||    
T  29713333 gagcttatgaaaaataacttatgtaaataaataag 29713299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 37410834 - 37410878
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||    
T  37410834 gcttatttt-gagcttatgaaaaatagcttatgtaaataaataagt 37410878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 3664101 - 3664177
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| |||| ||||||||||||||||||  |||| |  ||||| |||||||||| | || |||||||| ||||||    
T  3664101 ccgtttggattagcttattttagagcttatataaaatagtttatgcaaataaataaatttttatgtattatttataa 3664177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 12607244 - 12607201
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||    
T  12607244 gcttatttta-agcttatgaaaaatagcttatgtaaataaataag 12607201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 35055586 - 35055543
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||    
T  35055586 gcttatttt-gagcttatgaaaaatagcttatgtaaataaataag 35055543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 42102271 - 42102228
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||    
T  42102271 gcttatttt-gagcttatgaaaaatagcttatgtaaataaataag 42102228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 4974274 - 4974357
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttg 125  Q
    |||||||| |||| ||||||||||||||||||| ||| || |||||| ||||||||||| | |||||||||| |||||||||||    
T  4974274 gtccgtttggattggcttattttagagcttatgcaaagcagcttatgcaaataaataagcactaatgtattatttataaacttg 4974357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 20894466 - 20894544
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| |||| ||||||||||||||||||  |||||| ||||||||||||||||||| || |||||||| ||||||    
T  20894466 gtccgtttggattagcttattttagagcttatataaaacagcttatgtaaataaataagtttttatgtattatttataa 20894544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 3645269 - 3645344
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||| |||| ||||||||||||||||||  |||||| ||||||||||||||||||| || |||||||| ||||||    
T  3645269 cgtttggattagcttattttagagcttatataaaacagcttatgtaaataaataagtttttatgtattatttataa 3645344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 28623357 - 28623278
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaa 121  Q
    |||||||| |||| ||||||| ||||||||||  ||||||||||||| |||||||||||| || |||||||| |||||||    
T  28623357 gtccgtttggattagcttattgtagagcttatagaaaacaacttatgcaaataaataagtttttatgtattatttataaa 28623278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 4257415 - 4257346
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||| ||||||||||||||||||  ||||||||||||| |||||||||||| || |||||||| ||||||    
T  4257415 gattagcttattttagagcttatataaaacaacttatgcaaataaataagtttttatgtattatttataa 4257346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 10448741 - 10448821
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| |  || |||||||| |||||| |||||    
T  10448741 gtttggattagcttattttagagcttatgcaaaacaacttatgcaaataaatatgcctttatgtattatttataagcttgt 10448821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 24841510 - 24841451
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||| | ||||||||||||    
T  24841510 gtccgtttagatttgcttattttagagcttatgcaaagcaacttaagcaaataaataagt 24841451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 29614172 - 29614235
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||||||||||||  |||||| ||||||||||||||||||| || |||||||| ||||||    
T  29614172 cttattttagagcttatataaaacagcttatgtaaataaataagtttttatgtattatttataa 29614235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 2086811 - 2086730
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    ||||| |||| |||||||||||||||||||  ||||| |||||||||||||||||   || |||||||| |||||| |||||    
T  2086811 cgtttggattggcttattttagagcttatgctaaacagcttatgtaaataaataaacttttatgtattatttataatcttgt 2086730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 40581200 - 40581116
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||| ||||||||  ||||| || ||||||||| ||||||||||||| |||||||||||  || |||||||| | |||| |||||    
T  40581200 gtccattttgattgacttatctttgagcttatgcaaaacaacttatgcaaataaataagcttttatgtattattaataagcttgt 40581116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 38524093 - 38524135
Alignment:
Q  84 ttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||    
T  38524093 ttatgcaaataaataagtattaatgtattatttataaatttgt 38524135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 3645467 - 3645423
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||    
T  3645467 gcttatttt-gagcttatgaaaaatagcttatgtaaataaataagt 3645423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 29614358 - 29614314
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||    
T  29614358 gcttatttt-gagcttatgaaaaatagcttatgtaaataaataagt 29614314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 34707821 - 34707752
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||||||| ||||||||| ||||||||||| ||||||| |||||  || |||||||| | |||| |||||    
T  34707821 cttatttttgagcttatgcaaaacaacttacgtaaatatataagcttttatgtattattcataagcttgt 34707752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 29830878 - 29830822
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    |||||||||||||||||  ||||||  ||||| |||||||||||| || ||||||||    
T  29830878 cttattttagagcttatacaaaacagtttatgcaaataaataagtttttatgtatta 29830822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 716048 - 715964
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||||||| ||||  ||||||||| |||||||| ||| |||||||||||||||||||||| |  |||||||| ||||||||||||    
T  716048 gtccgtttggattgacttattttaaagcttatgcaaatcaacttatgtaaataaataagtttctatgtattatttataaacttgt 715964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 6632626 - 6632706
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||| |||| ||||||||||||||||||  ||||||||||||| ||||||||| |  || |||||||| ||||||||||||    
T  6632626 gtttggattagcttattttagagcttattcaaaacaacttatgcaaataaatatgcttttatgtattatttataaacttgt 6632706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 10184448 - 10184374
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||| |||| ||||||||||||||||||  |||||| ||||||||||||||||||| || || ||||| ||||||    
T  10184448 gtttggattagcttattttagagcttatataaaacagcttatgtaaataaataagtttttatctattatttataa 10184374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 4808544 - 4808613
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||| ||||||||||||||||||  |||||| |||||| |||||||| ||| || |||||||| ||||||    
T  4808544 gattagcttattttagagcttatataaaacagcttatgcaaataaatgagttttcatgtattatttataa 4808613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 32615535 - 32615458
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaa 121  Q
    |||||| ||||  ||||||||| |||||||  |||||| |||||| |||||||||||| || |||||||| |||||||    
T  32615535 ccgtttggattaacttattttatagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataaa 32615458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 1468153 - 1468216
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttata 119  Q
    ||||||||||||||||||  |||| | |||||| |||||||||||| || |||||||| |||||    
T  1468153 gcttattttagagcttatataaaatagcttatgcaaataaataagtttttatgtattatttata 1468216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 7267958 - 7267904
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||| |||| |||||||||  |||||||||| ||||||||||| |||||||||||    
T  7267958 gtttggattggcttatttttaagcttatgaataacaacttatgcaaataaataag 7267904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 8011169 - 8011091
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| |||| ||||||||||||||||||| | |  | || ||| ||||||||||| |||||| ||||| ||||||    
T  8011169 gtccgtttggattggcttattttagagcttatgtacagtagctaatgaaaataaataagcattaatatattatttataa 8011091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 34223632 - 34223570
Alignment:
Q  58 ttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||||| |||||  ||||||||||||| |||||||||||| || |||| ||| ||||||    
T  34223632 ttattttagaacttatataaaacaacttatgaaaataaataagtttttatgtgttatttataa 34223570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 29052496 - 29052453
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||||||| |||||||||||||| | |||||||||||||||||||    
T  29052496 cttatttt-gagcttatgaaaaatagcttatgtaaataaataagt 29052453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 15413970 - 15414026
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    |||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  15413970 cttattttagagcttatgcaaaacagcttatgcaaataaataagtattaatgtatta 15414026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 5203547 - 5203477
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaa 121  Q
    |||| ||||||||||||||||||  |||||| |||||| ||||||||||||||| |||||||| |||||||    
T  5203547 gattagcttattttagagcttatataaaacagcttatgcaaataaataagtatttatgtattatttataaa 5203477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 43318980 - 43319050
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| || || |||||||| |||||| |||||    
T  43318980 gcttattttagagcttatgcaaaacaacttatgcaaataaatatgtctttatgtattatttataagcttgt 43319050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 15122510 - 15122586
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| |||| ||||||||||||||||||  ||||||||||||| ||| |||||||| || |||||||| ||||||    
T  15122510 ccgtttggattagcttattttagagcttatataaaacaacttatgcaaagaaataagtttttatgtattatttataa 15122586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 15710012 - 15709936
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| |||| ||||||||||||||||||  ||||||||||||| |||||||||||| ||  ||||||| ||||||    
T  15710012 ccgtttggattagcttattttagagcttatataaaacaacttatgcaaataaataagtttttctgtattatttataa 15709936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 33757054 - 33757129
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||| |||| ||||||||||||||||||  |||||| |||||| |||||||||||| || |||||||| ||||||    
T  33757054 cgtttggattagcttattttagagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataa 33757129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 17668363 - 17668441
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||| ||| |||| ||||||||||||||||||  ||||||||||||| ||||||||| || || |||||||| ||||||    
T  17668363 gtccttttggattagcttattttagagcttatataaaacaacttatgcaaataaataggtgtttatgtattatttataa 17668441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 11991283 - 11991352
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||||||||  ||||||| |||||||||||||||||||||||||  || |||||||| |||||| |||||    
T  11991283 cttattttaatgcttatgcaaaacaacttatgtaaataaataagcttttatgtattatttataagcttgt 11991352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 33667513 - 33667444
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    |||||| |||| ||||||||||||||||||  |||||| |||||| |||||||||||| || ||||||||    
T  33667513 ccgtttggattagcttattttagagcttatataaaacagcttatgcaaataaataagtttttatgtatta 33667444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 29922094 - 29922153
Alignment:
Q  41 tgtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||||||||||| ||||||||| ||| |||||||||| | |||||| |||||||||||    
T  29922094 tgtccgttttgattggcttatttttgagtttatgaaaaatagcttatgcaaataaataag 29922153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 22202045 - 22201975
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||||  || |||||||| | |||| |||||    
T  22202045 gcttatttttgagcttatgcaaaacagcttatgtaaataaataagcttttatgtattattcataagcttgt 22201975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 26002960 - 26003038
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| ||||  |||||||||||||||||  ||||||  ||||| |||||||||||| || |||||||| ||||||    
T  26002960 gtccgtttggattaacttattttagagcttatacaaaacagtttatgcaaataaataagtttttatgtattatttataa 26003038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 40416079 - 40416017
Alignment:
Q  58 ttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||| ||||||||||| ||||||||||||| |||||| |||  |||||||||||| ||||||    
T  40416079 ttattatagagcttatgcaaaacaacttatgcaaataactaaacattaatgtattatttataa 40416017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 341967 - 342024
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    ||||||||| ||||||||| ||| ||||| |||||||||||||||| || ||||||||    
T  341967 gcttatttttgagcttatgcaaagcaactcatgtaaataaataagtttttatgtatta 342024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 26003162 - 26003118
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  26003162 gcttatttt-gagcttatgaaaaataacttatgtaaataaataagt 26003118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 13164872 - 13164797
Alignment:
Q  43 tccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttata 119  Q
    ||||||| |||| ||||||||||||||||||  |||||| |||||  |||||||||||| || |||||||| |||||    
T  13164872 tccgtttggattagcttattttagagcttatataaaacatcttatacaaataaataagt-tttatgtattatttata 13164797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 13739407 - 13739351
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||| |||| ||||||||| ||| |||||||||| |||||||| |||||||||||    
T  13739407 ccgtttggattggcttatttttgagtttatgaaaaataacttatgcaaataaataag 13739351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 17128247 - 17128323
Alignment:
Q  48 tttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaactt 124  Q
    |||||||  |||||||| ||||||||| |||||| |||||| |||||||||||  || |||||||| | ||||||||    
T  17128247 tttgattgacttatttttgagcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataaactt 17128323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 4728825 - 4728880
Alignment:
Q  58 ttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    ||||||||||||||||  |||||| |||||| |||||||||||| || ||||||||    
T  4728825 ttattttagagcttatataaaacagcttatgcaaataaataagtttttatgtatta 4728880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 16721990 - 16722069
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaa 121  Q
    ||||||||  ||| |||||||||| |||||||  |||| || ||||| |||||||||||| || |||||||| |||||||    
T  16721990 gtccgtttgaattagcttattttaaagcttatagaaaataatttatgcaaataaataagtttttatgtattatttataaa 16722069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 20458677 - 20458602
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||| |||| ||||||||||||||||||  |||||| |||||| |||||||||  | || |||||||| ||||||    
T  20458677 cgtttggattagcttattttagagcttatataaaacagcttatgcaaataaatacatttttatgtattatttataa 20458602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 25332346 - 25332283
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||||||| ||||| |||| | |||||| ||||||||||| |||||| ||||| ||||||    
T  25332346 cttattttagagtttatgtaaaatagcttatgcaaataaataagcattaatatattatttataa 25332283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 38498559 - 38498614
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||| |||| ||||||||||||||||||  ||||||||||||| | ||||||||||    
T  38498559 gtttggattagcttattttagagcttatataaaacaacttatgcagataaataagt 38498614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 2531305 - 2531367
Alignment:
Q  58 ttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||||| ||||  ||||||||||||| ||||||||||||  | |||||||| ||||||    
T  2531305 ttattttagagtttatataaaacaacttatgcaaataaataagttgttatgtattatttataa 2531367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 9477285 - 9477323
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaata 94  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  9477285 gcttattttagagcttatgcaaagcaacttatgtaaata 9477323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 10537318 - 10537252
Alignment:
Q  66 gagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgtgaagat 132  Q
    ||||||||| |||||| |||||| |||||||||||  || |||||||| |||||| ||||| |||||    
T  10537318 gagcttatgtaaaacagcttatgcaaataaataagcttttatgtattatttataagcttgtcaagat 10537252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 15363991 - 15364065
Alignment:
Q  58 ttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgtgaagat 132  Q
    ||||||||||| ||||| ||| ||  ||||  |||||||||  ||||||||||||| |||||||||||| |||||    
T  15363991 ttattttagagtttatgtaaatcagtttatacaaataaatatatattaatgtattatttataaacttgttaagat 15364065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 41125671 - 41125721
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaa 96  Q
    |||| |||| ||||||||| ||||||||| ||||||||||||| |||||||    
T  41125671 gtttggattggcttatttttgagcttatgcaaaacaacttatgcaaataaa 41125721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 33667314 - 33667354
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaat 97  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  33667314 gcttatttt-gagcttatgaaaaataacttatgtaaataaat 33667354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 38461201 - 38461245
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||||||||| ||||||||||||| | |||||||||||||||||||    
T  38461201 gcttatttta-agcttatgaaaaatagcttatgtaaataaataagt 38461245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 40452392 - 40452441
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||| ||||||||| |||||||||||||| | |||||| |||||||||||    
T  40452392 gattggcttatttttgagcttatgaaaaatagcttatgcaaataaataag 40452441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 6008393 - 6008345
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaacttatgtaaataaataa 99  Q
    |||| ||||||||||||| ||||  ||||||||||||| ||||||||||    
T  6008393 gattagcttattttagagtttatataaaacaacttatgcaaataaataa 6008345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 6150967 - 6150919
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaata 94  Q
    |||| ||||||||| |||| |||||||||||||| |||||||| |||||    
T  6150967 gtttggatttgcttctttttgagcttatgaaaaataacttatgcaaata 6150919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 15122702 - 15122659
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||    
T  15122702 gcttatttt-gagcttatgaaaaatagcttatgtaaataaataag 15122659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 29922296 - 29922228
Alignment:
Q  58 ttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    ||||||| ||||||||| ||||||  ||||| |||||||||||| || |||||||| | |||| |||||    
T  29922296 ttatttttgagcttatgcaaaacagtttatgcaaataaataagtttttatgtattattcataagcttgt 29922228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 33757252 - 33757209
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||    
T  33757252 gcttatttt-gagcatatgaaaaacaacttatgtaaatatataag 33757209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 41059709 - 41059753
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    ||||||||| ||||||||||||||||  ||||| |||||||||||    
T  41059709 gcttatttttgagcttatgaaaaacagtttatgcaaataaataag 41059753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 42558637 - 42558681
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    ||||||||| |||||||||||||| | |||||| |||||||||||    
T  42558637 gcttatttttgagcttatgaaaaatagcttatgcaaataaataag 42558681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 52700666 - 52700583
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||||||| ||||  |||||||||||||||||| ||| |||||||||||||||||||||| || |||||||| |||||| |||||    
T  52700666 gtccgtttggattgacttattttagagcttatgcaaa-caacttatgtaaataaataagtctttatgtattatttataagcttgt 52700583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 10796349 - 10796420
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    ||||||||  ||| ||||||||||||||||||| |||||||||| ||||||||||||||| || ||||||||    
T  10796349 gtccgtttgaattggcttattttagagcttatgcaaaacaacttgtgtaaataaataagtttttatgtatta 10796420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 15184510 - 15184588
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| ||||  |||||||||||||||||  |||||| ||||||||||||||||||| || |||||||| ||||||    
T  15184510 gtccgtttggattaacttattttagagcttatataaaacagcttatgtaaataaataagtttttatgtattatttataa 15184588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 2702834 - 2702760
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||| |||| ||||||||||||||||||| ||| || |||||| | |||||||||||||| ||||||| ||||||    
T  2702834 gtttggattggcttattttagagcttatgcaaagcagcttatgcacataaataagtattagtgtattatttataa 2702760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 9201614 - 9201692
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| |||| ||||||||||||| ||||  |||| |||||||| |||||||||||| || |||||||| ||||||    
T  9201614 gtccgtttggattagcttattttagagtttatataaaataacttatgcaaataaataagtttttatgtattatttataa 9201692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 46176092 - 46176022
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaa 121  Q
    |||| ||||||||||||||||||  |||||| |||||| |||||||||||| || |||||||| |||||||    
T  46176092 gattagcttattttagagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataaa 46176022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 22823761 - 22823818
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||||| |||| ||||||||||||||||||  ||||||||||||| ||||||||||||    
T  22823761 ccgtttggattagcttattttagagcttatataaaacaacttatgcaaataaataagt 22823818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 10795017 - 10794961
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||| || ||||||||    
T  10795017 cttattttagagcttatgcaaaacagcttgtgtaaataaataagtttttatgtatta 10794961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 19414101 - 19414169
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttata 119  Q
    |||| ||||||||||||||||||  |||||| |||||| |||||||||||| || |||||||| |||||    
T  19414101 gattagcttattttagagcttatagaaaacagcttatgcaaataaataagtttttatgtattatttata 19414169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 43699604 - 43699548
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||  |||||||||||    
T  43699604 ccgtttggattggcttatttttgagcttatgaaaaacaacttatacaaataaataag 43699548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 54593688 - 54593644
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||||||| |||||||||||||||||||||||| |||||||||||    
T  54593688 cttatttttgagcttatgaaaaacaacttatgttaataaataagt 54593644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 22117320 - 22117395
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||| |||| ||||||||||||||||||  ||||||||||||| |||||||||  | || |||||||| ||||||    
T  22117320 cgtttggattagcttattttagagcttatataaaacaacttatgcaaataaatacatttttatgtattatttataa 22117395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 4331501 - 4331451
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    ||||||||||| || ||| |||||||||| |||||||||||||||||||||    
T  4331501 gatttgcttatctttgagtttatgaaaaataacttatgtaaataaataagt 4331451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 4603438 - 4603376
Alignment:
Q  58 ttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| |||||||  ||||||||||||| |||||||||||| || |||||||| ||||||    
T  4603438 ttattttaaagcttatataaaacaacttatgcaaataaataagtttttatgtattatttataa 4603376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 9153704 - 9153654
Alignment:
Q  43 tccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaat 93  Q
    ||||||| ||||  |||||||||||||||||| ||||||||||||||||||    
T  9153704 tccgtttggattgacttattttagagcttatgcaaaacaacttatgtaaat 9153654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 9201815 - 9201771
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  9201815 gcttattttag-gcttatgaaaaataacttatgtaaataaataagt 9201771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 47202791 - 47202868
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaa 121  Q
    |||||| ||||  ||||||||| |||||||  |||||| |||||| |||||||||||| || |||||||| |||||||    
T  47202791 ccgtttggattaacttattttatagcttatataaaacagcttatgcaaataaataagtttttatgtattacttataaa 47202868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 42617350 - 42617274
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| |||| ||||||||||||||||||  |||||| |||||| ||||||||| || || | |||||| ||||||    
T  42617350 ccgtttggattagcttattttagagcttatacaaaacagcttatgcaaataaatacgtttttaagtattatttataa 42617274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 18424383 - 18424312
Alignment:
Q  59 tattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgtgaag 130  Q
    |||||| ||||||||| ||||||| ||||  |||||||||||  || |||||||| | ||||||||||||||    
T  18424383 tatttttgagcttatgcaaaacaatttatacaaataaataagcttttatgtattattcataaacttgtgaag 18424312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 29877606 - 29877673
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    |||| |||| ||||||||| ||||||||| ||||||| ||||| |||||||||||  || ||||||||    
T  29877606 gtttggattggcttatttttgagcttatgcaaaacaatttatgcaaataaataagcttttatgtatta 29877673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 34633364 - 34633419
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataa 99  Q
    |||||| |||| |||||||||  |||||||| ||||||||||||| ||||||||||    
T  34633364 ccgtttggattggcttattttttagcttatgcaaaacaacttatgcaaataaataa 34633419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 42611987 - 42611933
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||| |||| |||||||||  |||||||| ||||||||||||| |||||||||||    
T  42611987 gtttggattggcttattttttagcttatgcaaaacaacttatgcaaataaataag 42611933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 46175909 - 46175943
Alignment:
Q  66 gagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||||||||||| ||||||||||||||||||||    
T  46175909 gagcttatgaaaaataacttatgtaaataaataag 46175943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 48591330 - 48591388
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||| ||| |||| ||||||||| |||||||||||||| | |||||| |||||||||||    
T  48591330 gtccatttggattggcttatttttgagcttatgaaaaatagcttatgcaaataaataag 48591388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 52700465 - 52700506
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataa 99  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  52700465 cttatttt-gagcttatgaaaaagaacttatgtaaataaataa 52700506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 7673418 - 7673475
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||||| |||| | |||||||||||||||| |||||||  ||||| ||||||||||||    
T  7673418 ccgtttggattagtttattttagagcttataaaaaacagtttatgcaaataaataagt 7673475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 22303073 - 22303138
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaa 121  Q
    |||||||||||||||| |  ||||||  ||||| |||||||||||| || |||||||| |||||||    
T  22303073 gcttattttagagcttttataaaacagtttatgcaaataaataagtttttatgtattatttataaa 22303138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 31736485 - 31736452
Alignment:
Q  66 gagcttatgaaaaacaacttatgtaaataaataa 99  Q
    ||||||||| ||||||||||||||||||||||||    
T  31736485 gagcttatgcaaaacaacttatgtaaataaataa 31736452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 9319034 - 9319093
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagtt 116  Q
    ||||||||| ||||||||| ||||||||||||  |||||||||||| || ||||| |||||    
T  9319034 gcttatttt-gagcttatgcaaaacaacttatacaaataaataagtttttatgtagtagtt 9319093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 12022999 - 12023031
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgt 89  Q
    |||||||||||||||||| ||||||||||||||    
T  12022999 cttattttagagcttatgcaaaacaacttatgt 12023031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 15179982 - 15179939
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||    
T  15179982 gcttatttt-gagcttatgaaaaatagcttatgtaaataaataag 15179939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 38345731 - 38345786
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||| |||| ||||||||| |||||||| ||||| | ||||||||||||||||||    
T  38345731 ccgtttggattggcttatttttgagcttat-aaaaatagcttatgtaaataaataag 38345786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 43415397 - 43415341
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    |||||||| ||||||| | |||||||||| || |||||||||||| || ||||||||    
T  43415397 cttatttttgagcttaagtaaaacaacttctgcaaataaataagtttttatgtatta 43415341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 40301317 - 40301393
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| |||| |||||||||||||||||| ||||||| |||||| |||||||||||| || |||||||| ||||||    
T  40301317 ccgtttggattagcttattttagagcttataaaaaacagcttatgcaaataaataagtttttatgtattatttataa 40301393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 32522168 - 32522090
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| |||| | ||||||||||||||||  |||||| ||||||||||||||||||| || |||||||| ||||||    
T  32522168 gtccgtttggattagtttattttagagcttatataaaacagcttatgtaaataaataagtttttatgtattatttataa 32522090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 446415 - 446493
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| |||| |||||||||| |||||||  ||||||||||||| |||||||||||| || || ||||| ||||||    
T  446415 gtccgtttggattagcttattttatagcttatataaaacaacttatgcaaataaataagtttttatatattatttataa 446493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 32366117 - 32366191
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||| |||| ||||||||||||||||||  |||| |||||||| |||||||||||| || |||||||| ||||||    
T  32366117 gtttggattagcttattttagagcttatataaaataacttatgcaaataaataagtttttatgtattatttataa 32366191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 16108570 - 16108515
Alignment:
Q  58 ttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    ||||||||||| ||||| ||| ||||||||| ||||||||||| ||||||||||||    
T  16108570 ttattttagagtttatgtaaagcaacttatgcaaataaataagcattaatgtatta 16108515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 24438983 - 24439066
Alignment:
Q  43 tccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||||||  ||| ||||||||||||||||||| ||| |||| |||| ||||| ||||  |||||||||||| |||||| |||||    
T  24438983 tccgtttgaattggcttattttagagcttatgcaaagcaacatatgcaaatatataaacattaatgtattatttataatcttgt 24439066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 19683539 - 19683608
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    |||||| |||| |||| |||||||||||| | |||| ||||||||||||||||| ||| || ||||||||    
T  19683539 ccgtttggattagcttgttttagagcttacgtaaaataacttatgtaaataaatgagtttttatgtatta 19683608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 43796934 - 43796971
Alignment:
Q  83 cttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  43796934 cttatgtaaataaataagtattaatgtattatttataa 43796971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 15155780 - 15155860
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||| |||| ||||||||||  ||||||| ||||||||||||| ||||||||| |  || |||||||| |||||| |||||    
T  15155780 gtttggattagcttattttaaggcttatgtaaaacaacttatgaaaataaatatgcttttatgtattatttataatcttgt 15155860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 35515589 - 35515525
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||||||||||||| ||||||  ||| ||||||||||| || || |||||||| ||||||    
T  35515589 gcttattttagagcttatgtaaaacagtttacgtaaataaatatgtctttatgtattatttataa 35515525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 2757177 - 2757115
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||||||||||||  |||||| |||||| |||||||||||| || |||||||| ||||||    
T  2757177 cttattttagagcttatataaaacagcttatgcaaataaataagt-tttatgtattatttataa 2757115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 22898475 - 22898400
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaa 121  Q
    |||| |||| ||||||||||||||||||  |||| |||||||| |||||||||  | || |||||||| |||||||    
T  22898475 gtttggattagcttattttagagcttatataaaataacttatgcaaataaatacatttttatgtattatttataaa 22898400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 26440249 - 26440214
Alignment:
Q  66 gagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||||||||||||| |||||||||||||||||||||    
T  26440249 gagcttatgaaaaataacttatgtaaataaataagt 26440214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 4533502 - 4533444
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||||| ||||  |||||||| |||||||||||||| | |||||| |||||||||||    
T  4533502 gtccgtttggattaacttatttttgagcttatgaaaaatagcttatgcaaataaataag 4533444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 24007970 - 24007904
Alignment:
Q  43 tccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgt 109  Q
    ||||||| |||| ||||| ||| || ||||||||||| |||||||  ||||||||||| ||||||||    
T  24007970 tccgtttggattggcttacttttgatcttatgaaaaataacttattaaaataaataagcattaatgt 24007904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 27881120 - 27881042
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||  ||| ||||||||||||||||||| |||| | |||||| ||||||||| ||  | |||||||| ||||||    
T  27881120 gtccgtttaaattagcttattttagagcttatgcaaaatagcttatgcaaataaatatgttattatgtattatttataa 27881042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 2401741 - 2401688
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaata 98  Q
    ||||| |||| ||||||||||||||||||  |||||| |||||| |||||||||    
T  2401741 cgtttggattagcttattttagagcttatataaaacagcttatgcaaataaata 2401688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 5903511 - 5903580
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    |||||||| ||||| ||| ||||||||||||| ||||||| ||| |||| ||||||| | |||| |||||    
T  5903511 cttatttttgagctaatgcaaaacaacttatgcaaataaacaagcattagtgtattactcataagcttgt 5903580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 22422090 - 22422134
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||||||||| ||||||||||||| | |||||||||||||||||||    
T  22422090 gcttatttta-agcttatgaaaaatagcttatgtaaataaataagt 22422134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 33321511 - 33321442
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaacttgt 126  Q
    ||||||||  |||||||| ||||||||||||| |||||| ||||| || |||||||| | |||| |||||    
T  33321511 cttattttttagcttatgcaaaacaacttatgcaaataattaagtttttatgtattactcataagcttgt 33321442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 735880 - 735960
Alignment:
Q  40 atgtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||| |||| ||||  |||| ||||||||||||| |||| ||||| |||||| |||||||  || |||||||| ||||||    
T  735880 atgtctgtttggattgacttaatttagagcttatgcaaaataacttgtgtaaacaaataagcttttatgtattatttataa 735960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 12442980 - 12442924
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||| |||| ||||| ||| |||||||||||||||| |||||| | |||||||||    
T  12442980 ccgtttggattagcttaattttgagcttatgaaaaacagcttatgcagataaataag 12442924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 16225472 - 16225550
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| ||||  |||||||||||||||||| ||||||  |||||||||||||||||| || |||||||| ||||||    
T  16225472 gtccgtttggattgacttattttagagcttatgcaaaacagtttatgtaaataaataagtttttatgtattaattataa 16225550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 15791349 - 15791425
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||| ||||  |||||||||||||||||  |||||| ||||||||||||||||||| || |||||||| ||||||    
T  15791349 ccgtttggattaacttattttagagcttatataaaacagcttatgtaaataaataagtttttatgtattatttataa 15791425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 17348843 - 17348921
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||| |||| ||||||||||||| ||||  ||||||||||||| |||||||||||| || || ||||| ||||||    
T  17348843 gtccgtttggattagcttattttagagtttatataaaacaacttatgcaaataaataagtttttatctattatttataa 17348921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 49971218 - 49971270
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaata 98  Q
    |||| |||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  49971218 gtttagattagcttattttagagcttatgcaaaacaacttatgcaaataaata 49971270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 12256584 - 12256623
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataa 95  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  12256584 gcttattttagagcttatgcaaaacaacttatgtaaataa 12256623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 37148201 - 37148138
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||| |||||||| ||| || |||||| ||||||||||| |||||||||||| ||||||    
T  37148201 cttattttaaagcttatgcaaagcagcttatgcaaataaataagcattaatgtattatttataa 37148138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 37157026 - 37156963
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||| |||||||| ||| || |||||| ||||||||||| |||||||||||| ||||||    
T  37157026 cttattttaaagcttatgcaaagcagcttatgcaaataaataagcattaatgtattatttataa 37156963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 15631883 - 15631945
Alignment:
Q  58 ttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||||||||||  ||||||||||||  |||||||||||| || |||||||| ||||||    
T  15631883 ttattttagagcttatacaaaacaacttatacaaataaataagtttttatgtattatttataa 15631945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 29333381 - 29333458
Alignment:
Q  42 gtccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||||||  |||||||||||| |||||| ||| || | |||  |||||||||||||||||||||||| ||||||    
T  29333381 gtccgttttgatg-gcttattttagaacttatgcaaagcagcatatacaaataaataagtattaatgtattatttataa 29333458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 15235282 - 15235205
Alignment:
Q  43 tccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||| |||| |||||||||||| || ||  |||| | ||||||||||||||||||| || |||||||| ||||||    
T  15235282 tccgtttggattagcttattttagaactaatataaaatagcttatgtaaataaataagtttttatgtattatttataa 15235205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 22088520 - 22088463
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtatta 113  Q
    ||||||||||||| ||||  |||||| ||||||||||||||||||| || ||||||||    
T  22088520 gcttattttagagtttatataaaacagcttatgtaaataaataagtttttatgtatta 22088463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 32497385 - 32497316
Alignment:
Q  51 gatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||| ||||||||| ||||||||  |||||| |||||| |||||||||||| || |||||||| ||||||    
T  32497385 gattagcttattttggagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataa 32497316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 42367128 - 42367071
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    |||||| ||||||||||||||  ||||||||||||| | |||||| ||||||||||||    
T  42367128 ccgtttggatttgcttatttttaagcttatgaaaaatagcttatgcaaataaataagt 42367071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 5243512 - 5243448
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||||||||||||  |||||| |||||| |||||||||||| ||  ||||||| ||||||    
T  5243512 gcttattttagagcttatataaaacagcttatgcaaataaataagtttttgtgtattatttataa 5243448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 20169242 - 20169305
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||  || |||||||| ||||||    
T  20169242 gcttatttt-gagcttatgaaaaacagcttatgcaaataaataagcttttatgtattatttataa 20169305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 5347121 - 5347196
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||| |||| ||||||||||||||||||  |||| |||||||| |||||||||  | || |||||||| ||||||    
T  5347121 cgtttggattagcttattttagagcttatataaaataacttatgcaaataaatacatttttatgtattatttataa 5347196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 17628544 - 17628469
Alignment:
Q  45 cgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||| |||| | ||||||||||||||||  |||||| |||||  |||||||||||| || |||||||| ||||||    
T  17628544 cgtttggattagattattttagagcttatataaaacagcttatacaaataaataagtttttatgtattatttataa 17628469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 37329333 - 37329376
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||||| |||||||||||||| |||||||| |||||||||||    
T  37329333 cttatttttgagcttatgaaaaataacttatgcaaataaataag 37329376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 47413548 - 47413494
Alignment:
Q  46 gttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||| |||| ||||||||| |||||||||||||| | |||||| |||||||||||    
T  47413548 gtttggattggcttatttttgagcttatgaaaaatagcttatgcaaataaataag 47413494  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 15235082 - 15235126
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||    
T  15235082 gcttatttt-gagcttatgaaaaatagcttatgtaaataaataagt 15235126  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 391133 - 391189
Alignment:
Q  44 ccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||| |||| ||||||||| ||| ||||| |||||| |||||| |||||||||||    
T  391133 ccgtttggattggcttatttttgaggttatgcaaaacagcttatgcaaataaataag 391189  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 17814355 - 17814312
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||    
T  17814355 gcttatttt-gagcttatgaaaaatagcttatgtaaataaataag 17814312  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 35897526 - 35897582
Alignment:
Q  43 tccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataa 99  Q
    ||||||| ||||  |||||||| || ||||||||||| | |||||||||||||||||    
T  35897526 tccgtttggattgacttatttttgaacttatgaaaaatagcttatgtaaataaataa 35897582  T

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Target: scaffold1088 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 1272 - 1335
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    |||||||||||||||||| ||||||||||||| |||| |||||| |||||| ||||| ||||||    
T  1272 cttattttagagcttatgcaaaacaacttatgcaaatgaataaggattaatatattatttataa 1335  T

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Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 59232 - 59309
Alignment:
Q  43 tccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||| |||| ||| ||||||||||||||  |||||| |||||| |||||||||||| || | |||||| ||||||    
T  59232 tccgtttagattagctgattttagagcttatataaaacagcttatgcaaataaataagtttttaagtattatttataa 59309  T

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Target: scaffold0048; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 59431 - 59388
Alignment:
Q  57 cttattttagagcttatgaaaaacaacttatgtaaataaataagt 101  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||    
T  59431 cttatttta-agcttatgaaaaatagcttatgtaaataaataagt 59388  T

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Target: scaffold1130 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 2228 - 2290
Alignment:
Q  58 ttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataaa 121  Q
    ||||||||||| ||||  ||||||||||||| |||||||||| | ||||||||||| |||||||    
T  2228 ttattttagagtttatataaaacaacttatgcaaataaataaat-ttaatgtattatttataaa 2290  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 279113 - 279036
Alignment:
Q  43 tccgttttgatttgcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||| |||| ||||||||||||| ||||  |||| |||||||| ||||| |||| | || |||||||| ||||||    
T  279113 tccgtttggattagcttattttagagattatataaaataacttatgcaaatacataaatttttatgtattatttataa 279036  T

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Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 40785 - 40722
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataagtattaatgtattagttataa 120  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||| | || |||||||| ||||||    
T  40785 gcttattttagagtttatataaaacaacttatgcaaataaataaat-tttatgtattatttataa 40722  T

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Target: scaffold1367 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 1223 - 1180
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||    
T  1223 gcttatttta-agcttatgaaaaataacttatgcaaataaataag 1180  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 38374 - 38417
Alignment:
Q  56 gcttattttagagcttatgaaaaacaacttatgtaaataaataag 100  Q
    ||||||||||| |||||||||||| | ||||||||||||||||||    
T  38374 gcttattttag-gcttatgaaaaatagcttatgtaaataaataag 38417  T

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