View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_high_5 (Length: 492)
Name: NF19762_high_5
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 51118746 - 51118558
Alignment:
| Q |
29 |
acagcattcaccaaaacaataacaaaaaacagaattgaatgctttaagatgagttggtaaaatgattggagtagcagatatcaaatgtagaatctcaacc |
128 |
Q |
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| T |
51118746 |
acagcattcatcaaaacaataacaaaaaacagaattgaatgctttaagatgagttggtaaaatgattggagtagcagatatcaaatgtagaatctcaacc |
51118647 |
T |
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| Q |
129 |
ttaacttgaagcaattttctaaatctaaaattattgactatgcttttgtaaatagatacaaaatttgaaatcttatcaactatgaagct |
217 |
Q |
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| T |
51118646 |
ttaacttgaagcaattttctaaatctaaaattattgactatgcttttgtaaatagatacaaaatttgaaatcttaccaactatgaagct |
51118558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 279 - 478
Target Start/End: Complemental strand, 51118533 - 51118333
Alignment:
| Q |
279 |
tttgcacttcaacagatgatacaa-tcccaaacaactaaatatcgctcaaataaatagttataaacttgaaaatatttgtcgagtactcaatccttatct |
377 |
Q |
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| T |
51118533 |
tttgcacttcaacagatgatacaaatcccaaacaactaaatatcgctcaaataaatagttataaacttgaaaatatttgtcgagtactcaatccttatct |
51118434 |
T |
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| Q |
378 |
gtttgcagccgctgatcggtatggcttcaatagctacctgaagtgcaaagcaagacattcaagatgttgcaaacattaatatgaccatgactatatctct |
477 |
Q |
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| T |
51118433 |
gttagcagccactgatccgtatggcttcaatagctacctgaagtgcaaagcaaggcattcaagatgttgcaaacattaatatgaccatgactatatctct |
51118334 |
T |
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| Q |
478 |
g |
478 |
Q |
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| T |
51118333 |
g |
51118333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 51111804 - 51111708
Alignment:
| Q |
52 |
aaaaaacagaattgaatgctttaagatgagttggtaaaatgattggagtagcagatatcaaatgtagaatctcaaccttaacttgaagcaattttct |
148 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||| |||||||||| |||||||||||||| |||||||||||| |||||||| |||||| |
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| T |
51111804 |
aaaaaacagaattgaatgctttaaaatgagttggggaaatgactggagtagcaaatatcaaatgtagactctcaaccttaatttgaagcagttttct |
51111708 |
T |
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