View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_10 (Length: 447)
Name: NF19762_low_10
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 175 - 425
Target Start/End: Complemental strand, 9101725 - 9101476
Alignment:
| Q |
175 |
ccttcaattatgaggacccgtatttttcacttgattaataattatcttgagttttttaataattaggaannnnnnngcnnnnnnnntagaattaatccct |
274 |
Q |
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| T |
9101725 |
ccttcaattatgaggactcatatttttcacttgattaataattatcttgagttttttaataattaggaatttttttgcaaaaaaaataaaattaatccct |
9101626 |
T |
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| Q |
275 |
ttatcttttatatttaaataagagaatgcccaaaaagactataaaactagcctatccaataattgtagtcttataagatggnnnnnnnntgcaattgatt |
374 |
Q |
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| T |
9101625 |
ttatcttttatatttaaataagagaatgcccaaaaagactataaaactagcctatccaacaattgtagtcttataagatgg-aaaaaaatgcaattgatt |
9101527 |
T |
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| Q |
375 |
caaaacaattctcaagctctagttcctcatattcttccaagttaacttccc |
425 |
Q |
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| T |
9101526 |
caaaacaattctcaagctctagttcctcatattcttccaagttaacttccc |
9101476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 9101899 - 9101794
Alignment:
| Q |
1 |
gcaggttgtttagtttttcatttgttgatactactaatccaacatagaatctgtaaaattcaaggtctaatggtttaacatagtcaaactcacacacttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9101899 |
gcaggttgtttagtttttcatttgttgatactactaatccaacatagaatctgtaaaattcaaggtctaatggtttaacatagtcaaactcacacacttt |
9101800 |
T |
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| Q |
101 |
tgtcct |
106 |
Q |
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| T |
9101799 |
tgtcct |
9101794 |
T |
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