View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_11 (Length: 439)
Name: NF19762_low_11
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 39625709 - 39625280
Alignment:
| Q |
1 |
aaagaagttctagtgttatcataactaaccagtaatcacctaacaa-ctatttaaggaaatttaaactaagatcgaaagacctagttattcatcaaaatt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39625709 |
aaagaagttctagtgttatcataactaaccagtaatcacctaacaaactatttaaggaaatttaaactaagatcgaaagacctagttattcatcaaaatt |
39625610 |
T |
|
| Q |
100 |
agtattagcttacaaattaaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaaggttgagtaaagaagagaaggaaaaagcagc |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39625609 |
agtattagcttacaaa-----cagagaaatattgcatcggaattgattaagattgatgtgcgatgggaatgttgagtaaagaagagaaggaaaaagcagc |
39625515 |
T |
|
| Q |
200 |
---------------gacaatggtggcgacagtgagaggaagtaaacgaaagggtattgcaaagagttggatggtagtatttgaaacaggtgaatcacgt |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39625514 |
agtagggatggcagcgacaatggtggcgacagtgagaggaagtaaacaaaagggtattgcaaagagttggatggtagtatttgaaacaggtgaatcacgt |
39625415 |
T |
|
| Q |
285 |
gtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcaaccttcttctatct |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39625414 |
gtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcagccttcttctatct |
39625315 |
T |
|
| Q |
385 |
taggacgagaaaaagccattattgttaacttagaa |
419 |
Q |
| |
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| T |
39625314 |
taggacgagaaaaagccattattgttaacttagaa |
39625280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 39635259 - 39634830
Alignment:
| Q |
1 |
aaagaagttctagtgttatcataactaaccagtaatcacctaacaa-ctatttaaggaaatttaaactaagatcgaaagacctagttattcatcaaaatt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39635259 |
aaagaagttctagtgttatcataactaaccagtaatcacctaacaaactatttaaggaaatttaaactaagatcgaaagacctagttattcatcaaaatt |
39635160 |
T |
|
| Q |
100 |
agtattagcttacaaattaaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaaggttgagtaaagaagagaaggaaaaagcagc |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39635159 |
agtattagcttacaaa-----cagagaaatattgcatcggaattgattaagattgatgtgcgatgggaatgttgagtaaagaagagaaggaaaaagcagc |
39635065 |
T |
|
| Q |
200 |
---------------gacaatggtggcgacagtgagaggaagtaaacgaaagggtattgcaaagagttggatggtagtatttgaaacaggtgaatcacgt |
284 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39635064 |
agtagggatggcagcgacaatggtggcgacagtgagaggaagtaaacaaaagggtattgcaaagagttggatggtagtatttgaaacaggtgaatcacgt |
39634965 |
T |
|
| Q |
285 |
gtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcaaccttcttctatct |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39634964 |
gtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcagccttcttctatct |
39634865 |
T |
|
| Q |
385 |
taggacgagaaaaagccattattgttaacttagaa |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
39634864 |
taggacgagaaaaagccattattgttaacttagaa |
39634830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 246 - 419
Target Start/End: Complemental strand, 40276733 - 40276560
Alignment:
| Q |
246 |
aagagttggatggtagtatttgaaacaggtgaatcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgacctta |
345 |
Q |
| |
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||||||||||||||||||| || |||||||||||||| || || ||||| ||||||||||||||||||| ||||||||| |||||| | |||||||||| |
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| T |
40276733 |
aagagttggatggtagtatcagagacaggtgaatcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgacctta |
40276634 |
T |
|
| Q |
346 |
gagtctttgatacaaagctttctcaaccttcttctatcttaggacgagaaaaagccattattgttaacttagaa |
419 |
Q |
| |
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||| ||||| |||| || ||| | ||||||||||||||||||||||||||||| ||| | |||||||||||| |
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| T |
40276633 |
gagctcttgatccaaaactctctaacccttcttctatcttaggacgagaaaaagctattgtcgttaacttagaa |
40276560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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