View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_13 (Length: 408)
Name: NF19762_low_13
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 4588496 - 4588098
Alignment:
| Q |
1 |
cctaatgatggaacgattaaaatttaaaatagtttaaacaaacatnnnnnnngcatgttttaaccaagtaatctctaattacagaattacactaatgcaa |
100 |
Q |
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| T |
4588496 |
cctaatgatggaacgattaaaatttaaaatagtttaaacaaacataaaaaa-gcatgttttaaccaagtaatctctaattacagaattacactaatgcaa |
4588398 |
T |
|
| Q |
101 |
agnnnnnnnn---gttgaaggaactacactattgcaaagttgtttttaagaaagaaacatatagataagtagtatttttagtacttnnnnnnnnnnnnnn |
197 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4588397 |
agtttttttttttgttgaaggaactacactattgcaaagttgtttttaagaaagaaacatatagataagtagtatttttagtacttaaaaaataaaacaa |
4588298 |
T |
|
| Q |
198 |
nnngaggatttcatcccattctgcatcaattggatgggagcaaaactcaaggtaaatgatgaaatacaatgaaatttattccttcatacttcacctcatt |
297 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4588297 |
aaagaggatttcatcccattctgcataaattgaatgggagcaaaactcaaggtaaatgatgaaatacgatgaaatttattccttcatacttcacctcatt |
4588198 |
T |
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| Q |
298 |
tcattt-----tctttgtaccaatctaaacaacaaaacataaactcgttatattctattccatcatactaattatgttccttagtttatttagtacaaga |
392 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4588197 |
tcatttcattttctttgtaccaatctaaacaacaaaacataaactcattatattctattccatcatactaattatgttccttattttatttagtacaaga |
4588098 |
T |
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