View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_16 (Length: 386)
Name: NF19762_low_16
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 30770945 - 30770796
Alignment:
| Q |
11 |
cacagacgtgagtcggacattaagtcgcgcctaattctagaaaatttcacgattcataaattattttttatttacatcaacaactacaacaaccaaaatt |
110 |
Q |
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| T |
30770945 |
cacagacgtgagtcggacattaaatcacgcctaattctaaaaaatttcacgattcatagattattttttatttacatcaacaactacaacaaccaaaatt |
30770846 |
T |
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| Q |
111 |
tatcctactaacataatttgatttcttatgatagcattatactattaaca |
160 |
Q |
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| T |
30770845 |
tatcctactaacataatttgttttcttatgataacattatactattaaca |
30770796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 231 - 369
Target Start/End: Complemental strand, 30770726 - 30770588
Alignment:
| Q |
231 |
gagtaatgttacacaaagcataaccaaccataccttgtaactgaatctggtgaaggaagactcacaccaccactagtccttggttgaccaagctgcaatg |
330 |
Q |
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| T |
30770726 |
gagtaatgttacacaaagcataaccaaccataccttgtaactgaatctggtgatggaagactcacaccaccactagtccttggttgaacaagctgcaacg |
30770627 |
T |
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| Q |
331 |
gcaaaggcggttttcgagatccgattaatcctccataat |
369 |
Q |
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| T |
30770626 |
gtaaaggaggttttcgagatccgattaatcctccataat |
30770588 |
T |
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