View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19762_low_17 (Length: 380)
Name: NF19762_low_17
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 38270826 - 38271186
Alignment:
| Q |
1 |
tgaactgacaatttatatatgaacctattctgtctgtagtagtttattagagactaccatcaaaacgtaaaagccaatcctaaaagtagtaaagtgttac |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38270826 |
tgaactaacaatttatatatgaacctattctgtctgtagtagtttattagagactaccatcaaaacgtaaaagccaatcctaaaagtagtaaagtgttac |
38270925 |
T |
|
| Q |
101 |
atataaactactacataatgatacattggtttaatacaaaaagttctattagagaaacgtttcatattttctcaaattgtgagtttttattcacttgaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38270926 |
atataaactactacataatgatacattggtttaatacaaaaagttctatgagagaaacgtttcatattttctcaaattgtgattttttattcacttgaaa |
38271025 |
T |
|
| Q |
201 |
aggttgtcctaaacatcctgaaagtaggtaaatgtttcatatctttctctcaaattgtgattcccttcaaaaaatacatattacttgtaaggagnnnnnn |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38271026 |
aggttgtccttaacatcctgaaagtaggtaaatgtttcatatctttctctcaaattgtgattcccttcaaaaaatacatattacttgtaaggagaaaaaa |
38271125 |
T |
|
| Q |
301 |
ncattttacaatacattactaagtcttctgtccttccctttgtggctagtattgatctcaa |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
38271126 |
acattttacaatacattactaagtcttctgtccttccatttgcggctagtattaatctcaa |
38271186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 38272563 - 38272505
Alignment:
| Q |
159 |
gtttcatattttctcaaattgtgagtttttattcacttgaaaaggttgtcctaaacatc |
217 |
Q |
| |
|
|||||| |||||||||| |||| | || ||| ||||||||| ||||||||||||||||| |
|
|
| T |
38272563 |
gtttcacattttctcaagttgtaatttcttaatcacttgaagaggttgtcctaaacatc |
38272505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University