View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_18 (Length: 375)
Name: NF19762_low_18
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 27195372 - 27195733
Alignment:
| Q |
14 |
ttcatacaaaccatgcacactatttaatcaaaagctaaaggaggtttacaaaaagctgaaggaaaatgggcagaactttgagatcgtctttataccctta |
113 |
Q |
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| T |
27195372 |
ttcatacagagcatgcacgctatttactcaaaagcttaaggaggtttacaagaagctgaaggaaaatggggagaactttgaggtcgtgtttataccttta |
27195471 |
T |
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| Q |
114 |
gatgatgaagaagagtcattcaagaaagaattagaaagtgtgccttggttatccttgcctctcaaggacaaaacctgtgcgaaactaattcaatactttg |
213 |
Q |
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| T |
27195472 |
gatgatgaggaagatgcattcaagaaagaattagaaagtgcgccttggttatccttgcctctcaaggacaaaacctgtgcgaaattaattcagtactttg |
27195571 |
T |
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| Q |
214 |
agctatcagaactccccaccttggttattattgggccagatgggaaaactcttcatcctaatgccgctgaggccattgaggatcacggggttgatgcgta |
313 |
Q |
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| T |
27195572 |
agctatcagaactccccaccttggttattattgggccagatgggaaaactcttcatcctaatgccgctgaggccattgaggatcatggggttgatgcgta |
27195671 |
T |
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| Q |
314 |
tccattcactcctgaaaagttttctgaacttgatgaaatagcaaaggccaaggaggcatctc |
375 |
Q |
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| T |
27195672 |
tccattcactcctgaaaagttttctgaactcgatgaaatagcaaaggccaaggaggcatctc |
27195733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 3 - 375
Target Start/End: Original strand, 27210603 - 27210975
Alignment:
| Q |
3 |
ttctttacgatttcatacaaaccatgcacactatttaatcaaaagctaaaggaggtttacaaaaagctgaaggaaaatgggcagaactttgagatcgtct |
102 |
Q |
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| T |
27210603 |
ttctttacgacttcatacaaaccatgcgtgctatttaatcaaaagcttaaggaggtttacaacaacctgaaggaaaatggggagaactttgaggtcgtgt |
27210702 |
T |
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| Q |
103 |
ttatacccttagatgatgaagaagagtcattcaagaaagaattagaaagtgtgccttggttatccttgcctctcaaggacaaaacctgtgcgaaactaat |
202 |
Q |
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| T |
27210703 |
ttatacccttagatgatgaggaagagtcattcaagaaagaattagaaagcgtgccttggttatccttgcctctcaaggacaaaacttgtttgaaactagt |
27210802 |
T |
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| Q |
203 |
tcaatactttgagctatcagaactccccaccttggttattattgggccagatgggaaaactcttcatcctaatgccgctgaggccattgaggatcacggg |
302 |
Q |
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| T |
27210803 |
taagtactttgagctatcaacactcccctcctttgttgttattgggccagatgggaaaactcttcatcctaatgccgctgatgccattgaggatcatggg |
27210902 |
T |
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| Q |
303 |
gttgatgcgtatccattcactcctgaaaagttttctgaacttgatgaaatagcaaaggccaaggaggcatctc |
375 |
Q |
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| T |
27210903 |
atagacgcatatccattcactcctgaaaagttttctgaactcgatgaaatagcaaaggccaaggaggcatctc |
27210975 |
T |
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