View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_21 (Length: 345)
Name: NF19762_low_21
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 29135617 - 29135932
Alignment:
| Q |
19 |
ttcatttcatccaatcacaactcctcattctctctagctacttcaaaagagagtgtgtttttgtgtttgtgttgatcttggcattgagagtgagagtggt |
118 |
Q |
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| T |
29135617 |
ttcatttcatccaatcaaaactcctcattctctctagctacttcaaaaaagagtgtgtttttgtgtttgtgttgatcttggcattgagggtgagagtggt |
29135716 |
T |
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| Q |
119 |
ggaaggaaggaaggtgaaacaagtgtgaatactattactgtatgtcagtggaatattacagtggaatttactacggtgagcttgctaatcctttgcaatg |
218 |
Q |
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| T |
29135717 |
ggaaggaaggaaggtgaaacaagtgtgaatactattactgtatgtcagtggaatattacagtggaatttactacggtgagcttgctaatcctttgcaatg |
29135816 |
T |
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| Q |
219 |
gccacagttgaggaaaaaacgacgcctatttgttgttccctccaaaacaagaacaaaactgctgcaagtgcaacctctcctaatgttcctcagcaaaaac |
318 |
Q |
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| T |
29135817 |
gccacagttgaggaaaaaacgacgcctatttgttgttccctccaaaacaagaacaaaactgctgcaagtgcaacctctcctaatgttcctcagcaaaaac |
29135916 |
T |
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| Q |
319 |
aacagctacctttcat |
334 |
Q |
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| T |
29135917 |
aacagctacctttcat |
29135932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 14294439 - 14294528
Alignment:
| Q |
156 |
ctgtatgtcagtggaatattacagtggaatttactacggtgagcttgctaatcctttgcaatggccacagttgaggaaaaaacgacgcct |
245 |
Q |
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| T |
14294439 |
ctgtatgtcagtggaatactacagtacagttttgtacggtgagcttgctaacccttcacaatggccacagctcaggaaaaaacgacgcct |
14294528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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