View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_25 (Length: 315)
Name: NF19762_low_25
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 40 - 233
Target Start/End: Original strand, 42077047 - 42077241
Alignment:
| Q |
40 |
tcaacttagtgaaagtcc-aagaatgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgctt |
138 |
Q |
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| T |
42077047 |
tcaacttagtgaaagtcccaagaatgtattcaaccaagcgatcgaattagaaaatgaagcaaagtgcttgcttaaacgaatctctggcatctcagtgctt |
42077146 |
T |
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| Q |
139 |
gagaattaaaccttggaaaacaatagttctaagagtcctttctttctacagtttgcacatttctatgatactgatttccacttacaacaagcaaa |
233 |
Q |
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| T |
42077147 |
gagaattaaaccttggaaaacaataggtctaatagtcctttctttctacagtttccacatttctatgatacttatttccactcacaacaagcaaa |
42077241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 48466274 - 48466492
Alignment:
| Q |
40 |
tcaacttagtgaaagtcc-aagaatgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgctt |
138 |
Q |
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| T |
48466274 |
tcaatttagtgaaagtcccaagaatgtattcaaccaagcgatcgaattagaaaatgaagcaaagttcttgattaaacgagtcccgggaatttcagtgctc |
48466373 |
T |
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| Q |
139 |
gagaattaaaccttggaaaacaatagttctaagagtcctttctttctacagtttgcacatttctatgatactgatttccacttacaacaagcaaatcttt |
238 |
Q |
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| T |
48466374 |
gagaattaaaccttggaaaacagtaggtctaatagtcctttctttctacagtttccacatttctatgatactgagttccactcacagcaagcaaatcttg |
48466473 |
T |
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| Q |
239 |
aatcaccaattcaccacat |
257 |
Q |
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| T |
48466474 |
aatcaccaattcactacat |
48466492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 25585238 - 25585320
Alignment:
| Q |
63 |
tgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
145 |
Q |
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| T |
25585238 |
tgtattcaaccaagcgattgaattagcaaatgaagcaaagtcctctcttaaacgattccctggaatcttagtgcttgagaatt |
25585320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 25590121 - 25590203
Alignment:
| Q |
63 |
tgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
145 |
Q |
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| T |
25590121 |
tgtatttaaacaagcgattgaattagcaaatgaagcaaagtttttgctaaaacgaatccctggcgtctcagtgcttgagaatt |
25590203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 25599773 - 25599855
Alignment:
| Q |
63 |
tgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
145 |
Q |
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|||||| || |||| ||| ||||||| |||||||||||||| ||||| |||||| |||||||| || |||||||||||||| |
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| T |
25599773 |
tgtatttaaacaagcgattgaattagcaaatgaagcaaagtttttgctaaaacgaatccctggcgtctcagtgcttgagaatt |
25599855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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