View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_27 (Length: 304)
Name: NF19762_low_27
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 41076910 - 41077059
Alignment:
| Q |
19 |
ttgctttggatacacaaagcattattaacagcgagataagtatatggggtacagaggtgagtggaaccagtgcgttctgttctgactaaaccggagccgt |
118 |
Q |
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| T |
41076910 |
ttgctttggatacacaaagcattattaacagcgagataagtatatggggtacagaggtgagtggaaccagtgcgttctgttctgactaaaccggagccgt |
41077009 |
T |
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| Q |
119 |
cttcaatggtaacagagtccagacctgttaggatatagaataaagaaaaa |
168 |
Q |
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| T |
41077010 |
cttcaatggtaacagagtccagacctgttaggatatagaataaagaaaaa |
41077059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 41077137 - 41077182
Alignment:
| Q |
246 |
tgatcctttgtcccgttattctataatcctaacaagaccatcatag |
291 |
Q |
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| T |
41077137 |
tgatcctttatcccgttattctataatcctaacaagaccttcatag |
41077182 |
T |
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