View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19762_low_31 (Length: 284)

Name: NF19762_low_31
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19762_low_31
NF19762_low_31
[»] chr8 (28 HSPs)
chr8 (164-268)||(6468983-6469086)
chr8 (2-54)||(14422705-14422757)
chr8 (2-54)||(40118005-40118057)
chr8 (1-62)||(22260782-22260843)
chr8 (2-59)||(39206583-39206640)
chr8 (2-54)||(5320566-5320618)
chr8 (2-54)||(18594539-18594591)
chr8 (2-54)||(34842518-34842570)
chr8 (2-54)||(35118184-35118236)
chr8 (2-50)||(44805097-44805145)
chr8 (2-57)||(8021718-8021773)
chr8 (1-52)||(10836907-10836958)
chr8 (4-59)||(33287180-33287235)
chr8 (2-53)||(41575516-41575567)
chr8 (4-54)||(13110406-13110456)
chr8 (2-52)||(42571598-42571648)
chr8 (1-54)||(4035849-4035902)
chr8 (1-54)||(7791413-7791466)
chr8 (2-59)||(39218774-39218831)
chr8 (3-59)||(24113320-24113376)
chr8 (2-54)||(29938063-29938115)
chr8 (1-52)||(7774768-7774819)
chr8 (2-52)||(2042677-2042727)
chr8 (2-52)||(26783886-26783936)
chr8 (2-51)||(34679610-34679659)
chr8 (2-58)||(34999049-34999105)
chr8 (4-54)||(6144428-6144478)
chr8 (2-59)||(5005163-5005220)
[»] chr6 (17 HSPs)
chr6 (2-59)||(17261226-17261283)
chr6 (2-54)||(3955919-3955971)
chr6 (2-62)||(6086752-6086812)
chr6 (2-60)||(21893451-21893509)
chr6 (2-59)||(2837542-2837599)
chr6 (2-63)||(33463694-33463755)
chr6 (2-52)||(30691855-30691905)
chr6 (2-54)||(3347676-3347728)
chr6 (2-54)||(20726793-20726845)
chr6 (2-54)||(26704492-26704544)
chr6 (2-54)||(26947029-26947081)
chr6 (2-53)||(34887445-34887496)
chr6 (10-59)||(52833-52882)
chr6 (2-59)||(16307161-16307218)
chr6 (23-64)||(28199683-28199724)
chr6 (23-59)||(11167237-11167273)
chr6 (2-54)||(18613540-18613592)
[»] chr5 (20 HSPs)
chr5 (2-58)||(16069352-16069408)
chr5 (2-54)||(4120940-4120992)
chr5 (2-54)||(9008210-9008262)
chr5 (2-62)||(27679322-27679382)
chr5 (2-54)||(33491349-33491401)
chr5 (2-53)||(24105824-24105875)
chr5 (2-59)||(1579034-1579091)
chr5 (2-59)||(1605724-1605781)
chr5 (1-58)||(3921580-3921637)
chr5 (1-54)||(5202975-5203028)
chr5 (2-54)||(27420861-27420913)
chr5 (2-54)||(35782797-35782849)
chr5 (2-61)||(8374491-8374550)
chr5 (3-58)||(16737601-16737656)
chr5 (1-52)||(31410481-31410532)
chr5 (2-51)||(3386639-3386688)
chr5 (1-54)||(20992298-20992351)
chr5 (2-54)||(19358529-19358581)
chr5 (2-51)||(20992434-20992487)
chr5 (1-53)||(31883148-31883200)
[»] chr4 (41 HSPs)
chr4 (2-58)||(20877043-20877099)
chr4 (2-64)||(53717605-53717667)
chr4 (2-59)||(6611501-6611558)
chr4 (2-59)||(50055242-50055299)
chr4 (1-53)||(19165112-19165164)
chr4 (2-54)||(19913771-19913823)
chr4 (2-54)||(23776600-23776652)
chr4 (2-54)||(40428861-40428913)
chr4 (2-54)||(44785058-44785110)
chr4 (3-51)||(48909849-48909897)
chr4 (2-54)||(54412628-54412680)
chr4 (3-58)||(16700777-16700832)
chr4 (2-52)||(15241169-15241219)
chr4 (2-59)||(2481549-2481606)
chr4 (9-58)||(23265905-23265954)
chr4 (1-46)||(37968897-37968942)
chr4 (2-54)||(1756905-1756957)
chr4 (2-54)||(11639719-11639771)
chr4 (2-54)||(14987792-14987844)
chr4 (2-50)||(27583773-27583821)
chr4 (2-58)||(30423705-30423761)
chr4 (2-54)||(38055157-38055209)
chr4 (2-57)||(31969678-31969733)
chr4 (2-65)||(55344966-55345029)
chr4 (2-59)||(35490914-35490971)
chr4 (2-59)||(50053438-50053495)
chr4 (12-57)||(52139200-52139245)
chr4 (2-54)||(6688762-6688814)
chr4 (2-54)||(8932319-8932371)
chr4 (92-204)||(16170293-16170404)
chr4 (2-54)||(45424675-45424727)
chr4 (2-54)||(50353801-50353853)
chr4 (10-54)||(54189545-54189589)
chr4 (3-54)||(34615828-34615879)
chr4 (1-54)||(1617084-1617137)
chr4 (2-59)||(15669178-15669235)
chr4 (2-59)||(27488789-27488846)
chr4 (2-39)||(28032853-28032890)
chr4 (2-51)||(28360433-28360482)
chr4 (2-59)||(53875652-53875709)
chr4 (2-54)||(37464721-37464773)
[»] chr3 (28 HSPs)
chr3 (2-62)||(29445477-29445537)
chr3 (2-59)||(15520628-15520685)
chr3 (2-59)||(37698282-37698339)
chr3 (2-59)||(54534465-54534522)
chr3 (2-54)||(15520281-15520333)
chr3 (2-58)||(32244113-32244169)
chr3 (2-54)||(42308044-42308096)
chr3 (2-64)||(22175129-22175191)
chr3 (1-54)||(25494423-25494476)
chr3 (2-59)||(34700333-34700390)
chr3 (2-59)||(38933938-38933994)
chr3 (2-59)||(50528921-50528978)
chr3 (2-59)||(54870313-54870370)
chr3 (2-54)||(20699146-20699198)
chr3 (2-54)||(25999385-25999437)
chr3 (2-58)||(32359252-32359308)
chr3 (2-54)||(38856090-38856142)
chr3 (2-56)||(21581037-21581091)
chr3 (5-51)||(26122814-26122860)
chr3 (2-59)||(24835838-24835895)
chr3 (2-54)||(12117797-12117849)
chr3 (2-54)||(20842487-20842539)
chr3 (2-50)||(24366093-24366141)
chr3 (1-51)||(53028225-53028275)
chr3 (2-39)||(2895197-2895234)
chr3 (2-54)||(8042604-8042656)
chr3 (3-39)||(42105111-42105147)
chr3 (2-54)||(46452301-46452353)
[»] chr7 (29 HSPs)
chr7 (1-60)||(4477463-4477522)
chr7 (1-63)||(30181166-30181228)
chr7 (2-59)||(33846667-33846724)
chr7 (2-50)||(12101321-12101369)
chr7 (1-54)||(7164185-7164238)
chr7 (1-54)||(42204155-42204208)
chr7 (1-50)||(42965138-42965187)
chr7 (2-58)||(3511320-3511376)
chr7 (2-54)||(8630667-8630719)
chr7 (2-54)||(20346489-20346541)
chr7 (2-54)||(22649837-22649889)
chr7 (2-54)||(33359233-33359285)
chr7 (3-55)||(46891484-46891536)
chr7 (2-52)||(1803029-1803079)
chr7 (1-59)||(32041538-32041596)
chr7 (1-58)||(5280857-5280914)
chr7 (3-52)||(38866547-38866596)
chr7 (2-54)||(6394752-6394804)
chr7 (2-54)||(15655913-15655965)
chr7 (2-54)||(19828271-19828323)
chr7 (2-62)||(24792475-24792535)
chr7 (2-54)||(36890973-36891024)
chr7 (2-54)||(43068116-43068168)
chr7 (2-50)||(43156718-43156766)
chr7 (3-54)||(4347274-4347325)
chr7 (3-54)||(46134448-46134499)
chr7 (1-54)||(25748488-25748541)
chr7 (1-53)||(37005953-37006005)
chr7 (2-54)||(37704981-37705033)
[»] chr1 (35 HSPs)
chr1 (2-61)||(8079862-8079921)
chr1 (1-59)||(1168498-1168556)
chr1 (2-59)||(2473717-2473774)
chr1 (2-59)||(39260499-39260556)
chr1 (2-59)||(52753300-52753357)
chr1 (2-54)||(20089471-20089523)
chr1 (2-54)||(26663258-26663310)
chr1 (2-54)||(32671579-32671631)
chr1 (1-53)||(49146173-49146225)
chr1 (2-57)||(29078513-29078568)
chr1 (2-59)||(1940900-1940957)
chr1 (2-55)||(19715314-19715367)
chr1 (2-59)||(26580423-26580480)
chr1 (2-59)||(29288144-29288201)
chr1 (2-54)||(970679-970731)
chr1 (2-54)||(52696791-52696843)
chr1 (1-59)||(33510479-33510537)
chr1 (2-59)||(2347651-2347708)
chr1 (2-51)||(13996876-13996925)
chr1 (2-59)||(25897369-25897426)
chr1 (2-51)||(38829072-38829121)
chr1 (2-54)||(1170597-1170649)
chr1 (10-54)||(5215385-5215429)
chr1 (2-54)||(16052096-16052148)
chr1 (3-51)||(29695678-29695726)
chr1 (2-54)||(42370948-42371000)
chr1 (2-53)||(8120870-8120921)
chr1 (2-53)||(43905655-43905706)
chr1 (1-51)||(12682823-12682873)
chr1 (2-58)||(7145203-7145260)
chr1 (2-59)||(15554297-15554354)
chr1 (2-59)||(41928648-41928705)
chr1 (2-54)||(15203112-15203164)
chr1 (3-39)||(23322994-23323030)
chr1 (2-54)||(51359369-51359421)
[»] scaffold0012 (1 HSPs)
scaffold0012 (2-59)||(36700-36757)
[»] chr2 (18 HSPs)
chr2 (1-54)||(26323338-26323391)
chr2 (2-54)||(4016039-4016091)
chr2 (2-54)||(30420320-30420372)
chr2 (2-54)||(31517368-31517420)
chr2 (2-56)||(850995-851049)
chr2 (2-52)||(3873397-3873447)
chr2 (2-56)||(28329990-28330044)
chr2 (1-54)||(4232294-4232347)
chr2 (5-46)||(5733407-5733448)
chr2 (2-59)||(6174981-6175038)
chr2 (2-59)||(39635447-39635504)
chr2 (2-54)||(1108280-1108331)
chr2 (2-54)||(19901290-19901342)
chr2 (2-54)||(30270832-30270884)
chr2 (2-53)||(42937720-42937771)
chr2 (2-60)||(18807037-18807095)
chr2 (8-53)||(1483061-1483106)
chr2 (2-51)||(33906200-33906249)
[»] scaffold0482 (1 HSPs)
scaffold0482 (1-54)||(447-500)
[»] scaffold0920 (1 HSPs)
scaffold0920 (2-54)||(3710-3762)
[»] scaffold0038 (1 HSPs)
scaffold0038 (23-64)||(181-222)
[»] scaffold0172 (1 HSPs)
scaffold0172 (2-54)||(10238-10290)
[»] scaffold0167 (1 HSPs)
scaffold0167 (2-54)||(23104-23156)
[»] scaffold0018 (1 HSPs)
scaffold0018 (2-57)||(145398-145453)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 6469086 - 6468983
Alignment:
Q  164 ttttcaacaatgaagaagtgataattaactcatcaaaacttcaaaaaatttataaacatataagtttaaaaaacgttaccaatgaaggaagacaagtaaa 263  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6469086 ttttcaacaatgaagaagtgagaattaactcatcaaaacttcaaaaa-tttataaacatataagtttcaaaaacgttaccaatgaaggaagacaagtaaa 6468988  T
Q  264 agatc 268  Q
    |||||    
T  6468987 agatc 6468983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 14422757 - 14422705
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  14422757 cttatgggagtagataagcccacataagctcaaaataaaccaatccaaacggg 14422705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 40118005 - 40118057
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  40118005 cttatgggagtagataaacccacataagctcaaaataagccaatccaaacggg 40118057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22260782 - 22260843
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctatat 62  Q
    |||||||||||||||||| |  ||||||||||||||||| |||||||||||||| |||||||    
T  22260782 acttatgggagtagataagctcacataagctcaaaataagccaatccaaacggggcctatat 22260843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 39206640 - 39206583
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  39206640 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggccta 39206583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 5320618 - 5320566
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  5320618 cttatgggagtagataaactcacataagctcaaaataagccaatccaaacggg 5320566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 18594591 - 18594539
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  18594591 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 18594539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 34842518 - 34842570
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  34842518 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 34842570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 35118184 - 35118236
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  35118184 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 35118236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 44805097 - 44805145
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaa 50  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  44805097 cttatgggagtagataaacctacataagctcaaaataagccaattcaaa 44805145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 8021773 - 8021718
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacc 57  Q
    ||||||||||||||||| || | ||||||||||||||| |||||||||||||||||    
T  8021773 cttatgggagtagataagcccatataagctcaaaataagccaatccaaacgggacc 8021718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10836907 - 10836958
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  10836907 acttatgggagtagataagcccacataagctcaaaataagccaatccaaacg 10836958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 33287180 - 33287235
Alignment:
Q  4 tatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||||||||||||||| |||||||||||||||||  ||||||||||||| ||||    
T  33287180 tatgggagtagataaacccacataagctcaaaataagtcaatccaaacggggccta 33287235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 41575567 - 41575516
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  41575567 cttatgggagtagataagtctacataagctcaaaataagccaatccaaacgg 41575516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 13110456 - 13110406
Alignment:
Q  4 tatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  13110456 tatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 13110406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 42571648 - 42571598
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  42571648 cttatggaagtagataaacccacataagctcaaaataagccaatccaaacg 42571598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4035902 - 4035849
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||| || | ||||||| ||||||||||||||||||||||    
T  4035902 acttatgggagtagataagcccatataagctaaaaataaaccaatccaaacggg 4035849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7791466 - 7791413
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||||||  |||||| |||||||||| ||||||||||||||    
T  7791466 acttatgggagtagataaactcacataaactcaaaataagccaatccaaacggg 7791413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 39218831 - 39218774
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||| |||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  39218831 cttatgagagtagataagcccacataagctcaaaataagccaatccaaacggggccta 39218774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 24113320 - 24113376
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||||||||||||| || |||||||||||||||||  ||||||||||||| ||||    
T  24113320 ttatgggagtagataagcccacataagctcaaaataagtcaatccaaacggggccta 24113376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 29938115 - 29938063
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||| |||| || ||||||||||||||||| ||||||||||||||    
T  29938115 cttatgggagtatataagcccacataagctcaaaataagccaatccaaacggg 29938063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7774819 - 7774768
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    |||||||||||||||||||||  |||||||||||||||| |||||| |||||    
T  7774819 acttatgggagtagataaacccgcataagctcaaaataagccaatctaaacg 7774768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 2042677 - 2042727
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    |||||| |||||||||| || ||||||||||||||||| ||||||||||||    
T  2042677 cttatgagagtagataagcccacataagctcaaaataagccaatccaaacg 2042727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 26783886 - 26783936
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    |||||| |||||||||| || ||||||||||||||||| ||||||||||||    
T  26783886 cttatgagagtagataagcccacataagctcaaaataagccaatccaaacg 26783936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 34679610 - 34679659
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    ||||||||||||||||| || | ||||||||||||||| |||||||||||    
T  34679610 cttatgggagtagataagcccatataagctcaaaataagccaatccaaac 34679659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 34999049 - 34999105
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    ||||| ||||||||||||||   ||||||||||||||| |||||||| |||||||||    
T  34999049 cttataggagtagataaacccgtataagctcaaaataagccaatccatacgggacct 34999105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 6144428 - 6144478
Alignment:
Q  4 tatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||| || | |||||||||||||||  |||||||||||||    
T  6144428 tatgggagtagataagcccatataagctcaaaataagtcaatccaaacggg 6144478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 5005220 - 5005163
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||| ||||||||| || ||||||||| || |||| ||||||||||| |||||||    
T  5005220 cttatggaagtagataagcccacataagcttaagataagccaatccaaacaggaccta 5005163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 17261226 - 17261283
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  17261226 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacgggaccta 17261283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 3955919 - 3955971
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  3955919 cttatgggagtagataaacccacataagctcaaaataagccaatccaaacggg 3955971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 6086752 - 6086812
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctatat 62  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||    
T  6086752 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggcctatat 6086812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 21893509 - 21893451
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctat 60  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||||||||| |||||    
T  21893509 cttatgggagtagataaacccacataagctcaaaataaatcgatccaaacggggcctat 21893451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 2837599 - 2837542
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  2837599 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggccta 2837542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 33463755 - 33463694
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctatata 63  Q
    ||||||||||||||||| |  ||||||||||||||||| |||||||||||||||||| ||||    
T  33463755 cttatgggagtagataagctcacataagctcaaaataagccaatccaaacgggacctttata 33463694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 30691905 - 30691855
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  30691905 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacg 30691855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 3347676 - 3347728
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||| ||||||||| || ||||||||||||||||| ||||||||||||||    
T  3347676 cttatggaagtagataagcccacataagctcaaaataagccaatccaaacggg 3347728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 20726845 - 20726793
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || | ||||||||||||||| ||||||||||||||    
T  20726845 cttatgggagtagataagcccatataagctcaaaataagccaatccaaacggg 20726793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 26704492 - 26704544
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||| ||||||||||| || || |||||||||||||||||||||||||||||    
T  26704492 cttataggagtagataagcccacgtaagctcaaaataaaccaatccaaacggg 26704544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 26947029 - 26947081
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || | ||||||||||||||| ||||||||||||||    
T  26947029 cttatgggagtagataagcccatataagctcaaaataagccaatccaaacggg 26947081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 34887445 - 34887496
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    |||||||||| ||||||||| |||||||||||||||||  ||||||||||||    
T  34887445 cttatgggaggagataaacccacataagctcaaaataagtcaatccaaacgg 34887496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 52882 - 52833
Alignment:
Q  10 agtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  52882 agtagataagcccacataagctcaaaataagccaatccaaacggggccta 52833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 16307161 - 16307218
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||| |||||||||| || |||||||||||||||||  ||||||||||||| ||||    
T  16307161 cttatgcgagtagataagccaacataagctcaaaataagtcaatccaaacggggccta 16307218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 28199683 - 28199724
Alignment:
Q  23 acataagctcaaaataaaccaatccaaacgggacctatatat 64  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  28199683 acataagctcaaaataagtcaatccaaacgggacctatatat 28199724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 11167273 - 11167237
Alignment:
Q  23 acataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  11167273 acataagctcaaaataagccaatccaaacggggccta 11167237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 18613592 - 18613540
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||  |  ||||||||||||||||  |||||||||||||    
T  18613592 cttatgggagtagataagtccgcataagctcaaaataagtcaatccaaacggg 18613540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 16069408 - 16069352
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  16069408 cttatgggagtagataagcctacataagctcaaaataagtcaatccaaacgggacct 16069352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 4120992 - 4120940
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  4120992 cttatgggagtagataaacccacataagctcaaaataagccattccaaacggg 4120940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 9008210 - 9008262
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  9008210 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 9008262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 27679322 - 27679382
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctatat 62  Q
    |||||| |||||||||| || ||||||||||||||||| |||||||||||||| |||||||    
T  27679322 cttatgagagtagataagcccacataagctcaaaataagccaatccaaacggggcctatat 27679382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 33491349 - 33491401
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  33491349 cttatgagagtagataaacccacataagctcaaaataagccaatccaaacggg 33491401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 24105824 - 24105875
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  24105824 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacgg 24105875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 1579091 - 1579034
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || | ||||||||||||||| |||||||||||||| ||||    
T  1579091 cttatgggagtagataagcccatataagctcaaaataagccaatccaaacggggccta 1579034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 1605724 - 1605781
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || | ||||||||||||||| |||||||||||||| ||||    
T  1605724 cttatgggagtagataagcccatataagctcaaaataagccaatccaaacggggccta 1605781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3921637 - 3921580
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    |||||||||||||||||| || | |||| ||||||||||| |||||||||||||||||    
T  3921637 acttatgggagtagataagcccatataaactcaaaataaatcaatccaaacgggacct 3921580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5203028 - 5202975
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||||||| |||||| ||||||||||  |||||||||||||    
T  5203028 acttatgggagtagataaaccaacataaactcaaaataagtcaatccaaacggg 5202975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 27420913 - 27420861
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || | ||||||||||||||| ||||||||||||||    
T  27420913 cttatgggagtagataagcccatataagctcaaaataagccaatccaaacggg 27420861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 35782797 - 35782849
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||| || |||||||||||||||||  |||||||||||||    
T  35782797 cttatgcgagtagataagcccacataagctcaaaataaggcaatccaaacggg 35782849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 8374491 - 8374550
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctata 61  Q
    ||||||| ||||||||| || ||||||||| |||||||  ||||||||||||| ||||||    
T  8374491 cttatggaagtagataagcccacataagcttaaaataaggcaatccaaacggggcctata 8374550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 16737601 - 16737656
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    |||||||||||||||| || | ||||||||||||||| ||||| |||||| |||||    
T  16737601 ttatgggagtagataagcccatataagctcaaaataagccaattcaaacgagacct 16737656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31410532 - 31410481
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    ||||||||| ||||||||||| | |||| ||||||||||| |||||||||||    
T  31410532 acttatgggggtagataaacccatataaactcaaaataaatcaatccaaacg 31410481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 3386639 - 3386688
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    |||||| ||||||||||  | ||||||||||||||||| |||||||||||    
T  3386639 cttatgagagtagataagtccacataagctcaaaataagccaatccaaac 3386688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20992298 - 20992351
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||||  | ||||||||||||||||| ||||| ||||||||    
T  20992298 acttataggagtagataagaccacataagctcaaaataagccaattcaaacggg 20992351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 19358581 - 19358529
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||| ||||||||||| |  |||||||||||||||||  |||||||||||||    
T  19358581 cttataggagtagataagctcacataagctcaaaataaggcaatccaaacggg 19358529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 20992434 - 20992487
Alignment:
Q  2 cttatgggagtagataaacc----tacataagctcaaaataaaccaatccaaac 51  Q
    ||||||||||||||||| ||    |||||||||||||||||| |||||||||||    
T  20992434 cttatgggagtagataagcccatgtacataagctcaaaataagccaatccaaac 20992487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31883200 - 31883148
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    ||||||| ||||||||||  | |||||||||||||||||  ||||||||||||    
T  31883200 acttatgagagtagataagtccacataagctcaaaataagtcaatccaaacgg 31883148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 20877099 - 20877043
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||    
T  20877099 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacgggacct 20877043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 53717605 - 53717667
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctatatat 64  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||||||| |||| ||||    
T  53717605 cttatgggagtagataaactcacataagctcaaaataagccaatccaaacggggcctaaatat 53717667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 6611501 - 6611558
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||||| ||||    
T  6611501 cttatgggagtagataagtccacataagctcaaaataaaccaatccaaacggggccta 6611558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 50055242 - 50055299
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  50055242 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggccta 50055299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19165112 - 19165164
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    |||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  19165112 acttatgggagtagataagcccacataagctcaaaataagccaatccaaacgg 19165164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 19913771 - 19913823
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  19913771 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 19913823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 23776600 - 23776652
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  23776600 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 23776652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 40428861 - 40428913
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  40428861 cttatgggagtagataaacccacataagctcaaaataagccaattcaaacggg 40428913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 44785058 - 44785110
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  44785058 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 44785110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 48909897 - 48909849
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  48909897 ttatgggagtagataaacccacataagctcaaaataagccaatccaaac 48909849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 54412680 - 54412628
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  54412680 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 54412628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 16700832 - 16700777
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||    
T  16700832 ttatgggagtagataagcccacataagctcaaaataagccaatccaaacggaacct 16700777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 15241169 - 15241219
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  15241169 cttataggagtagataaacccacataagctcaaaataagccaatccaaacg 15241219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 2481549 - 2481606
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||| |||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  2481549 cttatgcgagtagataagcccacataagctcaaaataagccaatccaaacggggccta 2481606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 23265905 - 23265954
Alignment:
Q  9 gagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    |||||||||| || ||||||||||||||||| ||||||||||||||||||    
T  23265905 gagtagataagcccacataagctcaaaataagccaatccaaacgggacct 23265954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37968897 - 37968942
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatc 46  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  37968897 acttatgggagtagataagcccacataagctcaaaataaaccaatc 37968942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 1756905 - 1756957
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || | ||||||||||||||| ||||||||||||||    
T  1756905 cttatgggagtagataagcccatataagctcaaaataagccaatccaaacggg 1756957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 11639719 - 11639771
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||| || ||||||| ||||||||||||||||||||||||    
T  11639719 cttatgagagtagataagcccacataagttcaaaataaaccaatccaaacggg 11639771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 14987844 - 14987792
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||| |||| || ||||||||||||||||| ||||||||||||||    
T  14987844 cttatgggagtatataagcccacataagctcaaaataagccaatccaaacggg 14987792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 27583773 - 27583821
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaa 50  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  27583773 cttatgggagtagataagcctacataagctcaaaataagtcaatccaaa 27583821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 30423705 - 30423761
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    ||||||| ||||||||| || |||||| |||||||||| ||||||||||||||||||    
T  30423705 cttatggaagtagataagcccacataaactcaaaataagccaatccaaacgggacct 30423761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 38055209 - 38055157
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || |||||||||||||||||  |||||||||||||    
T  38055209 cttatgggagtagataagcccacataagctcaaaataagtcaatccaaacggg 38055157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 31969733 - 31969678
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacc 57  Q
    ||||||||||||||||| || | |||||||||||||||| |||| |||||||||||    
T  31969733 cttatgggagtagataagcccatataagctcaaaataaatcaattcaaacgggacc 31969678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 55344966 - 55345029
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctatatatt 65  Q
    |||||| ||||||||||||| |||||||||||||||||  |||| |||||||| ||||| ||||    
T  55344966 cttatgagagtagataaacccacataagctcaaaataagtcaattcaaacggggcctatgtatt 55345029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 35490914 - 35490971
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||| |||| ||||| || | ||||||||||||||| |||||||||||||||||||    
T  35490914 cttatgagagtggataagcccatataagctcaaaataagccaatccaaacgggaccta 35490971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 50053495 - 50053438
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||||||||||||||  | | ||||||||||||||| |||||||||||||| ||||    
T  50053495 cttatgggagtagataagtccatataagctcaaaataagccaatccaaacggggccta 50053438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 52139245 - 52139200
Alignment:
Q  12 tagataaacctacataagctcaaaataaaccaatccaaacgggacc 57  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||    
T  52139245 tagataaacccacataagttcaaaataagccaatccaaacgggacc 52139200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 6688762 - 6688814
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || |||||| ||||||||||  |||||||||||||    
T  6688762 cttatgggagtagataagcccacataaactcaaaataagtcaatccaaacggg 6688814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 8932319 - 8932371
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||| ||||||||||| ||  |||||||||||||||| ||||||||||||||    
T  8932319 cttataggagtagataagcccgcataagctcaaaataagccaatccaaacggg 8932371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 16170293 - 16170404
Alignment:
Q  92 aaaaatatggtaaacacttcaaatagattgaagacttgttgaccaaaccaagatctagggcattgaagacccttttcaacaatgaagaagtgataattaa 191  Q
    |||||| ||||||||||||||||  | || |||||||||||| ||||||||||  ||||| | | ||| ||||||||||  || ||||||||  ||||||    
T  16170293 aaaaatgtggtaaacacttcaaag-gtttaaagacttgttgagcaaaccaagacttagggaaataaaggcccttttcaatgatcaagaagtgtaaattaa 16170391  T
Q  192 ctcatcaaaactt 204  Q
    |||| ||| ||||    
T  16170392 ctcaacaacactt 16170404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 45424675 - 45424727
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||| || |||||||||||||||||  |||||||||||||    
T  45424675 cttatgcgagtagataagccaacataagctcaaaataagtcaatccaaacggg 45424727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 50353853 - 50353801
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| |  ||| ||||||||||||| ||||||||||||||    
T  50353853 cttatgggagtagataagctcacagaagctcaaaataagccaatccaaacggg 50353801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 54189589 - 54189545
Alignment:
Q  10 agtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||    
T  54189589 agtagataagcccacataagctcaaaataagccaatccaaacggg 54189545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 34615879 - 34615828
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| ||||||||||||||| |||| ||||||||| ||||| ||||||||    
T  34615879 ttatggaagtagataaacctacgtaagttcaaaataagccaattcaaacggg 34615828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1617137 - 1617084
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||| || ||||||| |  ||||||||||||||||| ||||||||||||||    
T  1617137 acttatgagaatagataagctcacataagctcaaaataagccaatccaaacggg 1617084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 15669235 - 15669178
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||| || ||||||| |  ||||||||||||||||| |||||||||||||| ||||    
T  15669235 cttatgtgattagataagctcacataagctcaaaataagccaatccaaacggggccta 15669178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 27488789 - 27488846
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || | ||||||||||  ||| |||||||||||||| ||||    
T  27488789 cttatgggagtagataagcccagataagctcaacttaagccaatccaaacggggccta 27488846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 28032853 - 28032890
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataa 39  Q
    ||||||||||||||||| || |||||||||||||||||    
T  28032853 cttatgggagtagataagcccacataagctcaaaataa 28032890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 28360482 - 28360433
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    |||||||||||||| || || |||||||||||||||||  ||||||||||    
T  28360482 cttatgggagtagaaaagcccacataagctcaaaataagtcaatccaaac 28360433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 53875709 - 53875652
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||| ||||| |||| || ||||||||| ||||||| ||||||||||||| |||||    
T  53875709 cttatgagagtatataagcccacataagcttaaaataagccaatccaaacggaaccta 53875652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 37464773 - 37464721
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| || ||||||| || ||||||||||||||||| ||||| ||||||||    
T  37464773 cttatgcgaatagataagcccacataagctcaaaataagccaattcaaacggg 37464721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 29445537 - 29445477
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctatat 62  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||||||| |||||||    
T  29445537 cttatgggagtagataaactcacataagctcaaaataagccaatccaaacggggcctatat 29445477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 15520685 - 15520628
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  15520685 cttatgcgagtagataaacccacataagctcaaaataagccaatccaaacggggccta 15520628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 37698282 - 37698339
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  37698282 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggccta 37698339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 54534465 - 54534522
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  54534465 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggccta 54534522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 15520281 - 15520333
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  15520281 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 15520333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 32244169 - 32244113
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  32244169 cttatggaagtagataaatccacataagctcaaaataagccaatccaaacgggacct 32244113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 42308044 - 42308096
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  42308044 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 42308096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 22175129 - 22175191
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctatatat 64  Q
    |||||| |||||||||| || ||||||||||||||||| |||||||||||||| ||| |||||    
T  22175129 cttatgcgagtagataagcccacataagctcaaaataagccaatccaaacggggcctctatat 22175191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25494423 - 25494476
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||| |||||||||| |||||||||||||||||  |||||||||||||    
T  25494423 acttatgggaatagataaacccacataagctcaaaataagtcaatccaaacggg 25494476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 34700390 - 34700333
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||| ||||||| ||||    
T  34700390 cttatggaagtaaataaacccacataagctcaaaataaaccaatctaaacggggccta 34700333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 38933994 - 38933938
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  38933994 cttatgggagtagataagcc-acataagctcaaaataagccaatccaaacggggccta 38933938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 50528978 - 50528921
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||| |||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  50528978 cttatgcgagtagataagcccacataagctcaaaataagccaatccaaacggggccta 50528921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 54870313 - 54870370
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||| |||||||||||| |||||| |||||||||| |||||||||||||| ||||    
T  54870313 cttatggaagtagataaacccacataaactcaaaataagccaatccaaacggggccta 54870370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 20699198 - 20699146
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||| || ||||||||||||||||| ||||||||||||||    
T  20699198 cttatgcgagtagataagcccacataagctcaaaataagccaatccaaacggg 20699146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 25999437 - 25999385
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||| ||||||||| || ||||||||||||||||| ||||||||||||||    
T  25999437 cttatggaagtagataagcccacataagctcaaaataagccaatccaaacggg 25999385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 32359308 - 32359252
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    ||||||| | |||||||| | ||||||||||||||||| ||||||||||||||||||    
T  32359308 cttatggaaatagataaatccacataagctcaaaataagccaatccaaacgggacct 32359252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 38856142 - 38856090
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || | ||||||||||||||| ||||||||||||||    
T  38856142 cttatgggagtagataagcccatataagctcaaaataagccaatccaaacggg 38856090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 21581091 - 21581037
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggac 56  Q
    ||||||||||||||||| || |||||||||||||||||  |||||||||| ||||    
T  21581091 cttatgggagtagataagcccacataagctcaaaataagtcaatccaaacaggac 21581037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 26122860 - 26122814
Alignment:
Q  5 atgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    |||||| |||||||||| ||||||||||||||||| |||||||||||    
T  26122860 atgggaatagataaacccacataagctcaaaataagccaatccaaac 26122814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 24835838 - 24835895
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||| |||||  ||| |||||||||||||||| ||||||||||||| ||||    
T  24835838 cttatgggagttgataagtctatataagctcaaaataaatcaatccaaacggggccta 24835895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 12117797 - 12117849
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||| ||||||| || ||||||||||||||||| ||||| ||||||||    
T  12117797 cttatgggaatagataagcccacataagctcaaaataagccaattcaaacggg 12117849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 20842487 - 20842539
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||| |  ||||||||||||||||| ||||||||||||||    
T  20842487 cttatgcgagtagataagctcacataagctcaaaataagccaatccaaacggg 20842539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 24366141 - 24366093
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaa 50  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||||    
T  24366141 cttatgcgagtagataaacccacataagctcaaaataagtcaatccaaa 24366093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 53028275 - 53028225
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    |||||||||| ||||||| || |||||||||||||||||  ||||||||||    
T  53028275 acttatgggaatagataagcccacataagctcaaaataagtcaatccaaac 53028225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 2895234 - 2895197
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataa 39  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  2895234 cttatgcgagtagataaacccacataagctcaaaataa 2895197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 8042656 - 8042604
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||| ||||||||| |  ||||||||||||||||| || |||||||||||    
T  8042656 cttatggaagtagataagctcacataagctcaaaataagcccatccaaacggg 8042604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 42105111 - 42105147
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataa 39  Q
    |||||||||||||||| || |||||||||||||||||    
T  42105111 ttatgggagtagataagcccacataagctcaaaataa 42105147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 46452301 - 46452353
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || | ||||||||||  ||| ||||||||||||||    
T  46452301 cttatgggagtagataagcccatataagctcaacttaagccaatccaaacggg 46452353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4477463 - 4477522
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctat 60  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||    
T  4477463 acttatgggagtagataagcccacataagctcaaaataagccaatccaaacggaacctat 4477522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30181166 - 30181228
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctatata 63  Q
    |||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||| ||||    
T  30181166 acttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggcctttata 30181228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 33846667 - 33846724
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  33846667 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggccta 33846724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 12101321 - 12101369
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaa 50  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  12101321 cttatgggagtagataaacccacataagctcaaaataagccaatccaaa 12101369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7164238 - 7164185
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||| || | ||||||||||||||| ||||||||||||||    
T  7164238 acttatgggagtagataagcccatataagctcaaaataagccaatccaaacggg 7164185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42204208 - 42204155
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||| |||||||||| || ||||||||||||||||| ||||||||||||||    
T  42204208 acttatgagagtagataagcccacataagctcaaaataagccaatccaaacggg 42204155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42965138 - 42965187
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaa 50  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||    
T  42965138 acttatgggagtagataagcccacataagctcaaaataagccaatccaaa 42965187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 3511376 - 3511320
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    ||||||| ||||||||| || |||||||||||||||||  |||||||||||||||||    
T  3511376 cttatggaagtagataagcccacataagctcaaaataagacaatccaaacgggacct 3511320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 8630719 - 8630667
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||| |||| |||||| |||||||||||| ||||||||||||    
T  8630719 cttatgggagtagatcaacccacataacctcaaaataaacaaatccaaacggg 8630667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 20346541 - 20346489
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||| || ||||||||||||||||| ||||||||||||||    
T  20346541 cttatgagagtagataagcccacataagctcaaaataagccaatccaaacggg 20346489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 22649837 - 22649889
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||| ||||||||    
T  22649837 cttatgggagtagataagcccacataagctcaaaataagccaattcaaacggg 22649889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 33359233 - 33359285
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||| ||||||||| || ||||||||||||||||| ||||||||||||||    
T  33359233 cttatggaagtagataagcccacataagctcaaaataagccaatccaaacggg 33359285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 46891484 - 46891536
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggga 55  Q
    |||| ||||||||||| |||| ||||||||||||||| |||||||||||||||    
T  46891484 ttataggagtagataagcctatataagctcaaaataagccaatccaaacggga 46891536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 1803079 - 1803029
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    ||||||||||||||||| || |||||||||||||||||  |||||||||||    
T  1803079 cttatgggagtagataagcccacataagctcaaaataagtcaatccaaacg 1803029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32041596 - 32041538
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||||| ||||||||| || |||||||| |||||||| |||||||||||||| ||||    
T  32041596 acttatggaagtagataagcccacataagcacaaaataagccaatccaaacggggccta 32041538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5280914 - 5280857
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacct 58  Q
    ||||||| || ||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  5280914 acttatgtgaatagataagctcacataagctcaaaataagccaatccaaacgggacct 5280857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 38866596 - 38866547
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    ||||||||||||||||||| |||||||||||||||||  | |||||||||    
T  38866596 ttatgggagtagataaacccacataagctcaaaataagtcgatccaaacg 38866547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 6394804 - 6394752
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||| ||||||| || ||||||||||||||||| |||||| |||||||    
T  6394804 cttatgggaatagataagcccacataagctcaaaataagccaatctaaacggg 6394752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 15655965 - 15655913
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| ||| |||||| || ||||||||||||||||| ||||||||||||||    
T  15655965 cttatgcgagcagataagcccacataagctcaaaataagccaatccaaacggg 15655913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 19828323 - 19828271
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || |||||| |||||||||| ||||| ||||||||    
T  19828323 cttatgggagtagataagccaacataaactcaaaataagccaattcaaacggg 19828271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 24792475 - 24792535
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctatat 62  Q
    ||||||||||||||||| || | ||||||||||  ||| |||||||||||||| |||||||    
T  24792475 cttatgggagtagataagcccagataagctcaacttaagccaatccaaacggggcctatat 24792535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 36890973 - 36891024
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| ||||||||||||| ||||||  |||||||||||||    
T  36890973 cttatgggagtagataagcctacataagctc-aaataagtcaatccaaacggg 36891024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 43068116 - 43068168
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || | |||||||||||||||  |||||||||||||    
T  43068116 cttatgggagtagataagcccatataagctcaaaataagtcaatccaaacggg 43068168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 43156766 - 43156718
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaa 50  Q
    ||||||||| ||||||| || ||||||||||||||||| ||||||||||    
T  43156766 cttatgggaatagataagcccacataagctcaaaataagccaatccaaa 43156718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 4347325 - 4347274
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||| || ||||||||| |||||||  |||||||||||||    
T  4347325 ttatgggagtagataagcccacataagcttaaaataagtcaatccaaacggg 4347274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 46134448 - 46134499
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||| |||||||||||||  |||||||||||||||||  |||||||||||||    
T  46134448 ttataggagtagataaactcacataagctcaaaataagtcaatccaaacggg 46134499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25748541 - 25748488
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||||||  | ||||||||||  ||| ||||||||||||||    
T  25748541 acttatgggagtagataaactaatataagctcaacttaagccaatccaaacggg 25748488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37005953 - 37006005
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    |||||| | |||||||||||  ||||||||| ||||||| |||||||||||||    
T  37005953 acttatagaagtagataaactcacataagcttaaaataagccaatccaaacgg 37006005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 37705033 - 37704981
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||| || |||||||||||||||||  ||| |||||||||    
T  37705033 cttatgagagtagataagcccacataagctcaaaataagtcaacccaaacggg 37704981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 8079862 - 8079921
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctata 61  Q
    |||||| |||||||||| || ||||||||||||||||| |||||||||||||||||||||    
T  8079862 cttatgagagtagataagcccacataagctcaaaataagccaatccaaacgggacctata 8079921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1168556 - 1168498
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  1168556 acttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggccta 1168498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 2473774 - 2473717
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||    
T  2473774 cttatgggcgtagataagcccacataagctcaaaataaaccgatccaaacgggaccta 2473717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 39260499 - 39260556
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  39260499 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggccta 39260556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 52753300 - 52753357
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  52753300 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggccta 52753357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 20089523 - 20089471
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  20089523 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 20089471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 26663310 - 26663258
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  26663310 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 26663258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 32671631 - 32671579
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  32671631 cttatgggagtagataaatccacataagctcaaaataagccaatccaaacggg 32671579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49146225 - 49146173
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  49146225 acttatgggagtatataaatccacataagctcaaaataaaccaatccaaacgg 49146173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 29078568 - 29078513
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacc 57  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||    
T  29078568 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacaggacc 29078513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 1940900 - 1940957
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || | ||||||||||||||| |||||||||||||| ||||    
T  1940900 cttatgggagtagataagcccatataagctcaaaataagccaatccaaacggggccta 1940957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 19715314 - 19715367
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggga 55  Q
    ||||| ||||||||||| |  |||||||||||||||||||||||||||||||||    
T  19715314 cttataggagtagataagctcacataagctcaaaataaaccaatccaaacggga 19715367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 26580423 - 26580480
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||| ||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  26580423 cttatgggaatagataagcccacataagctcaaaataagccaatccaaacggggccta 26580480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 29288201 - 29288144
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || |||||||||||||||||  ||||||||||||| ||||    
T  29288201 cttatgggagtagataagcccacataagctcaaaataagtcaatccaaacggggccta 29288144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 970679 - 970731
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || |||||||||||||||||  |||||||||||||    
T  970679 cttatgggagtagataagcccacataagctcaaaataagtcaatccaaacggg 970731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 52696843 - 52696791
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||| || ||||||||||||||||| ||||||||||||||    
T  52696843 cttatgcgagtagataagcccacataagctcaaaataagccaatccaaacggg 52696791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33510537 - 33510479
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||||||||||||||| |  | ||||||||||||||| |||||||||||||| ||||    
T  33510537 acttatgggagtagataagctcatataagctcaaaataagccaatccaaacggggccta 33510479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 2347708 - 2347651
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| ||  ||||| |||||||||||| |||||||||||| ||||    
T  2347708 cttatgggagtagataagcccgcataaactcaaaataaacaaatccaaacggggccta 2347651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 13996876 - 13996925
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    |||||||||||||||||||| ||||||  ||||||||| |||||||||||    
T  13996876 cttatgggagtagataaacccacataatttcaaaataagccaatccaaac 13996925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 25897426 - 25897369
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||  || |||||||||||||||||  ||||||||||||| ||||    
T  25897426 cttatgggagtagatatgcccacataagctcaaaataagtcaatccaaacggggccta 25897369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 38829121 - 38829072
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    ||||||| ||||||||| || ||||||||||||||||| |||||||||||    
T  38829121 cttatggaagtagataagccgacataagctcaaaataagccaatccaaac 38829072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 1170597 - 1170649
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||| ||||||||| || ||| ||||||||||||| ||||||||||||||    
T  1170597 cttatggaagtagataagcccacaaaagctcaaaataagccaatccaaacggg 1170649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 5215429 - 5215385
Alignment:
Q  10 agtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||    
T  5215429 agtagataagcccacataagctcaaaataagccaatccaaacggg 5215385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 16052148 - 16052096
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||| ||||||||| || |||||| |||||||||| ||||||||||||||    
T  16052148 cttatggaagtagataagcccacataaactcaaaataagccaatccaaacggg 16052096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 29695726 - 29695678
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    |||||||||||||||| || || |||||||||||||| |||||||||||    
T  29695726 ttatgggagtagataagcccacgtaagctcaaaataagccaatccaaac 29695678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 42370948 - 42371000
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| |  |||||||||||||||||  |||||||||||||    
T  42370948 cttatgggagtagataagctcacataagctcaaaataagtcaatccaaacggg 42371000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 8120921 - 8120870
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    |||||| ||||||||||  | ||||||||||||||||| |||||||||||||    
T  8120921 cttatgcgagtagataagtccacataagctcaaaataagccaatccaaacgg 8120870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 43905706 - 43905655
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    ||||| ||||||||||| || | ||||||||||||||| |||||||||||||    
T  43905706 cttataggagtagataagcccaaataagctcaaaataagccaatccaaacgg 43905655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12682873 - 12682823
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    |||||||||||||||||| || |||||| ||||||||||  ||||||||||    
T  12682873 acttatgggagtagataagcccacataaactcaaaataagtcaatccaaac 12682823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 7145260 - 7145203
Alignment:
Q  2 cttatgggagtagataaacctacataagctc-aaaataaaccaatccaaacgggacct 58  Q
    ||||||||||||||||||   |||||||||| |||||||  |||||||||||||||||    
T  7145260 cttatgggagtagataaatacacataagctcaaaaataagtcaatccaaacgggacct 7145203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 15554297 - 15554354
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || | ||||||||||  ||| |||||||||||||| ||||    
T  15554297 cttatgggagtagataagcccatataagctcaacttaagccaatccaaacggggccta 15554354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 41928648 - 41928705
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||| |||||||||||  | ||||||| ||||||||| |||||||||||||| ||||    
T  41928648 cttataggagtagataagtccacataagttcaaaataagccaatccaaacggggccta 41928705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 15203164 - 15203112
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||||| ||| ||||| |||||||  |||| ||||||||    
T  15203164 cttatgggagtagataaacccacaaaagcttaaaataagtcaattcaaacggg 15203112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 23322994 - 23323030
Alignment:
Q  3 ttatgggagtagataaacctacataagctcaaaataa 39  Q
    |||||||||||||||| |||| |||||||||||||||    
T  23322994 ttatgggagtagataagcctatataagctcaaaataa 23323030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 51359369 - 51359421
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||| |||| |||| ||  |||||||||||||||| ||||||||||||||    
T  51359369 cttatggcagtaaataagcccgcataagctcaaaataagccaatccaaacggg 51359421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 36757 - 36700
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  36757 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggggccta 36700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 26323338 - 26323391
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||||||||||    
T  26323338 acttatgggagtagataagtccacataagctcaaaataaaccaatccaaacggg 26323391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 4016091 - 4016039
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  4016091 cttatgggagtagataaactcacataagctcaaaataagccaatccaaacggg 4016039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 30420320 - 30420372
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  30420320 cttatgggagtagataagcccacataagctcaaaataagccaatccaaacggg 30420372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 31517368 - 31517420
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || | ||||||||||||||| ||||||||||||||    
T  31517368 cttatgggagtagataagcccaaataagctcaaaataagccaatccaaacggg 31517420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 851049 - 850995
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggac 56  Q
    |||||| |||||||||| |||||||||||| ||||||| | ||||||||||||||    
T  851049 cttatgagagtagataagcctacataagcttaaaataagcaaatccaaacgggac 850995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 3873397 - 3873447
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacg 52  Q
    |||||| |||||||||| || ||||||||||||||||| ||||||||||||    
T  3873397 cttatgagagtagataagcccacataagctcaaaataagccaatccaaacg 3873447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 28329990 - 28330044
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggac 56  Q
    |||||||| |||||||| || |||||||||||||||||  |||||||||||||||    
T  28329990 cttatgggtgtagataagcccacataagctcaaaataagtcaatccaaacgggac 28330044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4232294 - 4232347
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||| ||||||||| || |||||||| |||||||| ||||||||||||||    
T  4232294 acttatggaagtagataagcccacataagcacaaaataagccaatccaaacggg 4232347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 5733448 - 5733407
Alignment:
Q  5 atgggagtagataaacctacataagctcaaaataaaccaatc 46  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  5733448 atgggagtagataagcccacataagctcaaaataaaccaatc 5733407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 6174981 - 6175038
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||||||||| |||| |  ||||||||||||||||| |||||||||||||| ||||    
T  6174981 cttatgggagtatataagctcacataagctcaaaataagccaatccaaacggggccta 6175038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 39635504 - 39635447
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggaccta 59  Q
    |||||||||||||||||  | ||||||||||||||||| | |||||||||||| ||||    
T  39635504 cttatgggagtagataagtccacataagctcaaaataagctaatccaaacggggccta 39635447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 1108331 - 1108280
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||| || ||||||||||||||||| || |||||||||||    
T  1108331 cttatgggagtagataagcccacataagctcaaaataagcc-atccaaacggg 1108280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 19901290 - 19901342
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||| |||||| || || ||||||||||||||||| ||||||||||||||    
T  19901290 cttatggaagtagagaagcccacataagctcaaaataagccaatccaaacggg 19901342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 30270832 - 30270884
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||||||||||||||||  | ||||||| ||||||| ||||||||||||||    
T  30270832 cttatgggagtagataaactcatataagcttaaaataagccaatccaaacggg 30270884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 42937771 - 42937720
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    ||||||| | |||||||||  ||||||||||||||||| |||||||||||||    
T  42937771 cttatggaaatagataaactcacataagctcaaaataagccaatccaaacgg 42937720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 18807037 - 18807095
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacctat 60  Q
    |||||| |||||||||| |  | ||||||||||||||| |||||||||||||| |||||    
T  18807037 cttatgagagtagataagctcatataagctcaaaataagccaatccaaacggggcctat 18807095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 1483061 - 1483106
Alignment:
Q  8 ggagtagataaacctacataagctcaaaataaaccaatccaaacgg 53  Q
    ||||||||||| || ||||||||||||||||| |||||| ||||||    
T  1483061 ggagtagataagcccacataagctcaaaataagccaatcaaaacgg 1483106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 33906200 - 33906249
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaac 51  Q
    ||||||||||||||||| || ||||||| |||||||||  ||||||||||    
T  33906200 cttatgggagtagataagcccacataagttcaaaataagtcaatccaaac 33906249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 447 - 500
Alignment:
Q  1 acttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    ||||||||||||||||||||  |||||| |||||||||| ||||||||||||||    
T  447 acttatgggagtagataaactcacataaactcaaaataagccaatccaaacggg 500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0920 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 3762 - 3710
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||| || ||||||| ||||||||||||||||||||||||    
T  3762 cttatgagagtagataagcccacataagttcaaaataaaccaatccaaacggg 3710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 181 - 222
Alignment:
Q  23 acataagctcaaaataaaccaatccaaacgggacctatatat 64  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  181 acataagctcaaaataagtcaatccaaacgggacctatatat 222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 10290 - 10238
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| ||||||||||||| | |||||||||||||||  |||||||||||||    
T  10290 cttatgagagtagataaacccatataagctcaaaataagtcaatccaaacggg 10238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 23104 - 23156
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacggg 54  Q
    |||||| |||||||||| || | ||||||||||||||| ||||||||||||||    
T  23104 cttatgagagtagataagcccatataagctcaaaataagccaatccaaacggg 23156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 145398 - 145453
Alignment:
Q  2 cttatgggagtagataaacctacataagctcaaaataaaccaatccaaacgggacc 57  Q
    |||||||||||||||||  | |||||| ||||||||||  ||||||||||||||||    
T  145398 cttatgggagtagataagtccacataaactcaaaataagtcaatccaaacgggacc 145453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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