View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_32 (Length: 268)
Name: NF19762_low_32
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 27918041 - 27917808
Alignment:
| Q |
18 |
aatatacggtacaggtgggtctacctctgtatacagcattcattgccattattcgataggtcaattacttccctctcattagccaaaaatttcgtatact |
117 |
Q |
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| T |
27918041 |
aatatacggtacaggtgggtctacctctgtatacagcattcattgccattattcgataggtcaattacttccctctcattagccaaaaatttcgtatact |
27917942 |
T |
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| Q |
118 |
ttagaggctgggccttgaatttgttgtccatagctatatccaatgcccactttactgcatcgtgatatatatgtttttcttgtttggtaaactgaagtaa |
217 |
Q |
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| T |
27917941 |
ttagaggcagggccttgaatttgttgtccatagctatatccaatgcccac-ttactgcatcgtg----atatgtttttcttgtttggtaaactgaagtaa |
27917847 |
T |
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| Q |
218 |
gtatacttgtataccactgaagtatgtttttcgtatatt |
256 |
Q |
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| T |
27917846 |
gtatacttgtataccactgaagtatgttttttgtatatt |
27917808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 27895923 - 27895878
Alignment:
| Q |
65 |
attattcgataggtcaattacttccctctcattagccaaaaatttc |
110 |
Q |
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| T |
27895923 |
attattcgataggtcaattacttccatctcattagccaaaaatttc |
27895878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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