View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19762_low_35 (Length: 256)

Name: NF19762_low_35
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19762_low_35
NF19762_low_35
[»] chr7 (22 HSPs)
chr7 (1-236)||(48963927-48964158)
chr7 (80-185)||(22801684-22801790)
chr7 (133-189)||(1885579-1885635)
chr7 (144-210)||(5937429-5937494)
chr7 (127-189)||(35238175-35238237)
chr7 (77-176)||(25956464-25956552)
chr7 (93-181)||(24339656-24339745)
chr7 (144-188)||(2144547-2144591)
chr7 (149-192)||(2143866-2143909)
chr7 (137-188)||(36196787-36196838)
chr7 (77-181)||(44172834-44172935)
chr7 (132-190)||(9050129-9050187)
chr7 (132-181)||(31808505-31808554)
chr7 (131-181)||(27945055-27945105)
chr7 (151-188)||(6091334-6091371)
chr7 (150-183)||(18678160-18678193)
chr7 (159-188)||(31377007-31377036)
chr7 (144-189)||(44317294-44317339)
chr7 (93-181)||(5409798-5409881)
chr7 (93-181)||(9778514-9778597)
chr7 (137-177)||(10893870-10893910)
chr7 (137-189)||(13094714-13094766)
[»] chr5 (18 HSPs)
chr5 (78-189)||(30080442-30080554)
chr5 (65-189)||(21319873-21319998)
chr5 (137-186)||(16207592-16207641)
chr5 (98-169)||(21542056-21542128)
chr5 (93-181)||(31084337-31084420)
chr5 (93-175)||(21522770-21522853)
chr5 (93-175)||(21533336-21533419)
chr5 (149-188)||(42192283-42192322)
chr5 (138-188)||(10010561-10010611)
chr5 (151-189)||(26205775-26205813)
chr5 (135-181)||(28296342-28296388)
chr5 (131-181)||(32444780-32444830)
chr5 (148-189)||(9031937-9031978)
chr5 (137-189)||(19167577-19167630)
chr5 (93-181)||(19579715-19579804)
chr5 (144-189)||(38784812-38784857)
chr5 (149-181)||(16199298-16199330)
chr5 (98-181)||(30098340-30098424)
[»] chr4 (19 HSPs)
chr4 (77-182)||(37496717-37496823)
chr4 (79-191)||(13307881-13307983)
chr4 (137-189)||(44362672-44362724)
chr4 (127-184)||(22799884-22799941)
chr4 (98-181)||(847965-848049)
chr4 (136-188)||(13117436-13117488)
chr4 (127-186)||(27624083-27624142)
chr4 (136-189)||(28663498-28663550)
chr4 (93-181)||(30982834-30982923)
chr4 (98-181)||(24613662-24613746)
chr4 (77-116)||(39619053-39619092)
chr4 (144-186)||(10164862-10164904)
chr4 (151-181)||(14465309-14465339)
chr4 (93-181)||(5225569-5225658)
chr4 (151-208)||(5654606-5654662)
chr4 (148-189)||(10634996-10635037)
chr4 (144-188)||(13484030-13484075)
chr4 (98-169)||(19482694-19482766)
chr4 (137-189)||(35062451-35062502)
[»] chr8 (18 HSPs)
chr8 (77-189)||(27733853-27733966)
chr8 (98-181)||(22651990-22652074)
chr8 (79-189)||(10497758-10497869)
chr8 (92-189)||(26915201-26915293)
chr8 (144-185)||(31119097-31119138)
chr8 (111-181)||(21465426-21465497)
chr8 (144-183)||(42874534-42874573)
chr8 (93-181)||(29447066-29447155)
chr8 (98-181)||(2572017-2572101)
chr8 (137-189)||(24295138-24295190)
chr8 (79-189)||(2652345-2652455)
chr8 (144-187)||(3954388-3954431)
chr8 (145-188)||(22600536-22600579)
chr8 (152-189)||(6960692-6960729)
chr8 (132-181)||(31548289-31548338)
chr8 (144-189)||(34073986-34074031)
chr8 (127-175)||(5307080-5307128)
chr8 (98-181)||(29510265-29510349)
[»] chr2 (15 HSPs)
chr2 (79-193)||(43585958-43586062)
chr2 (84-185)||(24067263-24067365)
chr2 (144-189)||(13501086-13501131)
chr2 (144-186)||(14450803-14450845)
chr2 (93-181)||(37419757-37419846)
chr2 (71-115)||(8300180-8300224)
chr2 (63-189)||(17895820-17895942)
chr2 (138-189)||(42665614-42665665)
chr2 (137-187)||(24067758-24067808)
chr2 (140-189)||(11439801-11439850)
chr2 (144-177)||(16630813-16630846)
chr2 (144-189)||(18512150-18512195)
chr2 (136-189)||(33884057-33884110)
chr2 (157-185)||(2356379-2356407)
chr2 (144-188)||(37211893-37211937)
[»] chr6 (19 HSPs)
chr6 (77-189)||(785395-785509)
chr6 (132-189)||(19369823-19369880)
chr6 (136-189)||(6751882-6751935)
chr6 (142-189)||(10031576-10031623)
chr6 (93-181)||(16766711-16766800)
chr6 (132-189)||(22745963-22746020)
chr6 (77-126)||(26178542-26178591)
chr6 (136-189)||(1334667-1334720)
chr6 (144-189)||(5579660-5579705)
chr6 (133-181)||(6284658-6284706)
chr6 (137-189)||(16503681-16503733)
chr6 (153-189)||(29959181-29959217)
chr6 (112-181)||(4118308-4118378)
chr6 (151-188)||(5635903-5635940)
chr6 (132-181)||(9024172-9024221)
chr6 (144-181)||(10157998-10158035)
chr6 (93-181)||(31384934-31385022)
chr6 (137-189)||(16516947-16516999)
chr6 (136-189)||(26402680-26402735)
[»] scaffold0314 (1 HSPs)
scaffold0314 (78-189)||(8954-9053)
[»] scaffold0504 (2 HSPs)
scaffold0504 (127-189)||(8688-8750)
scaffold0504 (77-109)||(8653-8685)
[»] scaffold0024 (1 HSPs)
scaffold0024 (132-189)||(18104-18161)
[»] chr3 (12 HSPs)
chr3 (93-181)||(4987247-4987336)
chr3 (132-189)||(15864251-15864308)
chr3 (135-189)||(49179714-49179768)
chr3 (137-189)||(14338484-14338536)
chr3 (77-120)||(34834879-34834922)
chr3 (131-181)||(44427855-44427905)
chr3 (93-181)||(14832113-14832202)
chr3 (136-188)||(6984771-6984823)
chr3 (131-181)||(11093584-11093634)
chr3 (131-181)||(19323443-19323493)
chr3 (142-175)||(13005446-13005479)
chr3 (149-189)||(52558141-52558181)
[»] chr1 (18 HSPs)
chr1 (106-185)||(18946003-18946083)
chr1 (93-181)||(6612127-6612216)
chr1 (93-181)||(32461420-32461508)
chr1 (136-185)||(43966816-43966865)
chr1 (133-185)||(24462267-24462319)
chr1 (133-189)||(40176609-40176665)
chr1 (126-181)||(3451869-3451924)
chr1 (130-181)||(6427364-6427415)
chr1 (93-175)||(47989517-47989600)
chr1 (151-181)||(2445884-2445914)
chr1 (136-177)||(7988451-7988492)
chr1 (128-181)||(8203835-8203888)
chr1 (144-189)||(40686766-40686811)
chr1 (93-181)||(1486671-1486754)
chr1 (149-181)||(14332422-14332454)
chr1 (98-181)||(27471527-27471611)
chr1 (144-188)||(28170389-28170432)
chr1 (93-156)||(40917788-40917852)
[»] scaffold0044 (1 HSPs)
scaffold0044 (98-181)||(53194-53278)
[»] scaffold0123 (1 HSPs)
scaffold0123 (96-187)||(44484-44576)
[»] scaffold0020 (1 HSPs)
scaffold0020 (98-177)||(137798-137878)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48963927 - 48964158
Alignment:
Q  1 ccatccatttatgtgatataggataaggaggtaatttaaataattatgatcggtttggttacaggctttgttgcgtggacacttctgattgaaggcatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  48963927 ccatccatttatgtgatataggataaggaggtaatttaaataattatgatcggtttggttacaggctttgttgcatggacacttctgattgaaggtatgt 48964026  T
Q  101 cccggtgtccgacacgtatcgtgtccacactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatctgtggctgaca 200  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  48964027 cccggtgttcgacacgtatcgtgtccacacttacacgacaccaacacttgtgattaaattgaattatgtcattttctcacaattttatctgtggctgacg 48964126  T
Q  201 tgtctgtgtctgtcattgtcatgtccggtgtatgtg 236  Q
    ||||||    ||||||||||||||||||||||||||    
T  48964127 tgtctg----tgtcattgtcatgtccggtgtatgtg 48964158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 22801684 - 22801790
Alignment:
Q  80 cacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctc 178  Q
    ||||||||||||||||| |||||| |||||||||| || | |||||  |||||||||  ||||| ||||||||||||| | |||||||||||||| ||||    
T  22801684 cacttctgattgaaggcgtgtcccagtgtccgacaagtgtggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctc 22801783  T
Q  179 aaaattt 185  Q
    |||||||    
T  22801784 aaaattt 22801790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 1885635 - 1885579
Alignment:
Q  133 acacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||    
T  1885635 acacgacaccgacacttgtgattacattgaattatgtcattttttcaaaattttatc 1885579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 5937429 - 5937494
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttatctgtggctgacatgtctgtgtc 210  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| || | |||| ||||||||||    
T  5937429 acacttgtgattacattgaattatgtcattttctcaaaattttatccgt-gttgacgtgtctgtgtc 5937494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 35238175 - 35238237
Alignment:
Q  127 acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||    
T  35238175 acacagacacgacactaacacgtgtgattatattgaattatgtcattttctcaaaatattatc 35238237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 25956552 - 25956464
Alignment:
Q  77 ggacacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtccacactgacacgacaccaacacttgtgattaaattgaattatgtcattttc 176  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||||||          ||||||| ||||||||||||| |||||||||||||||||||    
T  25956552 ggacacttctgattgaaggcgtgtccc-gtgtccgacatgtatcgtgtc----------cgacaccgacacttgtgattacattgaattatgtcattttc 25956464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 24339745 - 24339656
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||| || |||| |||||||| |||| ||||||||||| |||||||| |||| | |||||||||| ||||| |||||    
T  24339745 aggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaa 24339656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 2144547 - 2144591
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttat 188  Q
    |||| |||||||| |||||||||||||||||||||||||||||||    
T  2144547 acacgtgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 2143866 - 2143909
Alignment:
Q  149 tgtgattaaattgaattatgtcattttctcaaaattttatctgt 192  Q
    |||||||| |||||||||||||||||||||||||||| ||||||    
T  2143866 tgtgattacattgaattatgtcattttctcaaaatttaatctgt 2143909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 36196838 - 36196787
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttat 188  Q
    ||||||||||||||||||||  |||||||||||  |||||||||||||||||    
T  36196838 gacaccaacacttgtgattatgttgaattatgttgttttctcaaaattttat 36196787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 44172834 - 44172935
Alignment:
Q  77 ggacacttctgattgaaggcatgtcccggtgtccgacacgtatc-gtgtccacactgacacgacaccaacacttgtgattaaattgaattatgtcatttt 175  Q
    ||||||||||||||||||  ||||| || |||||||||||| || |||   ||||  |||| |||| ||||| |||||||| ||||||||||||||||||    
T  44172834 ggacacttctgattgaagttatgtcacg-tgtccgacacgtgtcagtg---acaccaacacaacacaaacacatgtgattacattgaattatgtcatttt 44172929  T
Q  176 ctcaaa 181  Q
    ||||||    
T  44172930 ctcaaa 44172935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 9050129 - 9050187
Alignment:
Q  132 gacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatct 190  Q
    ||||||||||  |||| |||||||| |||||| ||||||||||| ||||||||||||||    
T  9050129 gacacgacacagacacatgtgattatattgaactatgtcattttttcaaaattttatct 9050187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 31808505 - 31808554
Alignment:
Q  132 gacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||||||| |||||||| ||||| || |||||||||||||||    
T  31808505 gacacgacaccaacacatgtgattacattgacttgtgtcattttctcaaa 31808554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 27945105 - 27945055
Alignment:
Q  131 tgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||| |||||||| |||| | |||||||||| |||||||||||    
T  27945105 tgacacgacaccgacacttgtaattacactgaattatgtaattttctcaaa 27945055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 6091371 - 6091334
Alignment:
Q  151 tgattaaattgaattatgtcattttctcaaaattttat 188  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  6091371 tgattatattgaattatatcattttctcaaaattttat 6091334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 18678193 - 18678160
Alignment:
Q  150 gtgattaaattgaattatgtcattttctcaaaat 183  Q
    ||||||| ||||||||||||||||||||||||||    
T  18678193 gtgattatattgaattatgtcattttctcaaaat 18678160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 31377036 - 31377007
Alignment:
Q  159 ttgaattatgtcattttctcaaaattttat 188  Q
    ||||||||||||||||||||||||||||||    
T  31377036 ttgaattatgtcattttctcaaaattttat 31377007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 44317294 - 44317339
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||| |||||| |||||||||||||||||| | |||||||||||    
T  44317294 acacttatgattacattgaattatgtcatttttttaaaattttatc 44317339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 5409798 - 5409881
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtccacactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||| ||||||| ||||||||     ||||||||||| |||||||| |||  | |||||||||| ||||| |||||    
T  5409798 aggcgtgtcccggtgtcggacacgtgtcgtgtcc-----gacacgacaccgacacttgtaattgcactgaattatgtgattttttcaaa 5409881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 9778597 - 9778514
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtccacactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||| ||||||| | ||||||     ||||||||||| |||||||| |||| | |||||||||| ||||| |||||    
T  9778597 aggcgtgtcccggtgtcggacacgtgttgtgtcc-----gacacgacaccgacacttgtaattatactgaattatgtgattttttcaaa 9778514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 10893870 - 10893910
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttct 177  Q
    ||||||||||| |||||||| ||| ||||||||||||||||    
T  10893870 gacaccaacacatgtgattacattcaattatgtcattttct 10893910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 13094714 - 13094766
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||| ||||| ||||||| |||||||||| |  ||||||||||||||||||    
T  13094714 gacaccgacactagtgattacattgaattatatagttttctcaaaattttatc 13094766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 30080442 - 30080554
Alignment:
Q  78 gacacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttc 176  Q
    ||||||||| ||||||||  ||||||||||||||||| || || ||||| ||||| |||| ||||| | ||||||||||| |||||||||||||||||||    
T  30080442 gacacttctaattgaaggagtgtcccggtgtccgacatgtgtcatgtccgacactaacaccacaccgatacttgtgattacattgaattatgtcattttc 30080541  T
Q  177 tcaaaattttatc 189  Q
    |||||||||||||    
T  30080542 tcaaaattttatc 30080554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 21319873 - 21319998
Alignment:
Q  65 gctttgttgcgtggacacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaa 163  Q
    ||||||||||  | |||||||||||||||||  | ||| ||||| ||| |   ||||||||| |||| |||| |||| | ||||||||||||| ||||||    
T  21319873 gctttgttgcacgaacacttctgattgaaggtctatcctggtgttcgatatacatcgtgtccgacaccgacatgacatcgacacttgtgattacattgaa 21319972  T
Q  164 ttatgtcattttctcaaaattttatc 189  Q
    |||| ||||||| |||||||||||||    
T  21319973 ttatatcattttttcaaaattttatc 21319998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 16207592 - 16207641
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttctcaaaatttt 186  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||||||    
T  16207592 gacaccaacacttgtgattacattgaattatgtcaatttctctaaatttt 16207641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 21542128 - 21542056
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgt 169  Q
    |||||||||||| ||||||| |||||||| |||| ||||||||||| |||||||| |||| | ||||||||||    
T  21542128 tgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 31084420 - 31084337
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtccacactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||||||||| ||||| ||||||| ||||||||     ||||||||| | |||||||| |||| |||||||||||| ||||| |||||    
T  31084420 aggcatgtcccagtgtcggacacgtgtcgtgtcc-----gacacgacatcgacacttgtaattacattgaattatgtgattttttcaaa 31084337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 21522853 - 21522770
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcatttt 175  Q
    |||| |||||||||| | ||||||| |||||||| |||| ||||||||||| ||| |||| |||| | |||||||||| |||||    
T  21522853 aggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttatttt 21522770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 21533419 - 21533336
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcatttt 175  Q
    |||| |||||||||| | ||||||| |||||||| |||| ||||||||||| ||| |||| |||| | |||||||||| |||||    
T  21533419 aggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttatttt 21533336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 42192322 - 42192283
Alignment:
Q  149 tgtgattaaattgaattatgtcattttctcaaaattttat 188  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  42192322 tgtgattacattgaattatgtcattgtctcaaaattttat 42192283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 10010611 - 10010561
Alignment:
Q  138 acaccaacacttgtgattaaattgaattatgtcattttctcaaaattttat 188  Q
    ||||| |||| |||||||| | |||||||||||||||| ||||||||||||    
T  10010611 acaccgacacatgtgattacaatgaattatgtcattttttcaaaattttat 10010561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 26205775 - 26205813
Alignment:
Q  151 tgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  26205775 tgattacactgaattatgtcattttctcaaaattttatc 26205813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 28296388 - 28296342
Alignment:
Q  135 acgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||||||||||| | ||| || ||||||||||||||||||||||||    
T  28296388 acgacaccaacacatatgagtacattgaattatgtcattttctcaaa 28296342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 32444830 - 32444780
Alignment:
Q  131 tgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||| |||| | |||||| ||||||||||||||| ||||||||    
T  32444830 tgacacgacaccgacacatttgattacattgaattatgtcatcttctcaaa 32444780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 9031937 - 9031978
Alignment:
Q  148 ttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||    
T  9031937 ttgtgattagattgaattatgtcatttcctcaaaaatttatc 9031978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 19167577 - 19167630
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtca-ttttctcaaaattttatc 189  Q
    |||||| ||||||||||||| |||||||| ||||| |||| |||||||||||||    
T  19167577 gacaccgacacttgtgattacattgaattgtgtcatttttttcaaaattttatc 19167630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 19579804 - 19579715
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||  ||||  | |||||||| |||||||||||||||| |||||||| |||  | | |||||||| |||||||||||    
T  19579804 aggcgtgtcccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaattatgtgattttctcaaa 19579715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 38784857 - 38784812
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||||||||| |||||||||| ||||||| ||| |||||||||    
T  38784857 acacttgtgattacattgaattatatcattttttcacaattttatc 38784812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 16199298 - 16199330
Alignment:
Q  149 tgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||||||||||||||||||||||||| |||||    
T  16199298 tgtgattaaattgaattatgtcattttgtcaaa 16199330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 30098424 - 30098340
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||| |||||| ||||||| |||||||| |||||||| ||| ||| |||  | | |||| |||||||||||| |||||||||||    
T  30098424 tgtcctggtgtctgacacgtgtcgtgtccgacactgactcgataccgacatctataattacattgaattatgtgattttctcaaa 30098340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 37496823 - 37496717
Alignment:
Q  77 ggacacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtcca-cactgacacgacaccaacacttgtgattaaattgaattatgtcatttt 175  Q
    |||||||| ||||||||||| ||||||||||||||||| || ||||||||  ||  ||||| ||||| ||||||||||||| ||||||||||||||||||    
T  37496823 ggacacttatgattgaaggcgtgtcccggtgtccgacatgtgtcgtgtccggcaacgacacaacaccgacacttgtgattacattgaattatgtcatttt 37496724  T
Q  176 ctcaaaa 182  Q
    |||||||    
T  37496723 ctcaaaa 37496717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 13307983 - 13307881
Alignment:
Q  79 acacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtccacactgacacgacaccaacacttgtgattaaattgaattatgtcattttctc 178  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||||          |||||||||||||||||||| |||||||||||||||||||||    
T  13307983 acacttctgattgaaggcatgtcatggtgtctgacacgtgtcgtgtcc----------gacaccaacacttgtgattacattgaattatgtcattttctc 13307894  T
Q  179 aaaattttatctg 191  Q
    |||||||||||||    
T  13307893 aaaattttatctg 13307881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 44362724 - 44362672
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  44362724 gacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatc 44362672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 22799884 - 22799941
Alignment:
Q  127 acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaatt 184  Q
    |||||||||||||||  |||| |||||||| |||||||||||||||||||| ||||||    
T  22799884 acactgacacgacactgacacgtgtgattacattgaattatgtcattttctaaaaatt 22799941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 848049 - 847965
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||||||||| |||||||| |||||||| ||||  ||| |||||| |||||||| |||| | |||||||||| |||||||||||    
T  848049 tgtcccggtgttcgacacgtttcgtgtccgacaccaacaagacaccgacacttgtaattatagtgaattatgtaattttctcaaa 847965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 13117488 - 13117436
Alignment:
Q  136 cgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttat 188  Q
    ||||||| ||||||||||||| |||||||| |||||||||||| |||||||||    
T  13117488 cgacaccgacacttgtgattacattgaattttgtcattttctccaaattttat 13117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 27624083 - 27624142
Alignment:
Q  127 acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaatttt 186  Q
    |||||||||||||||| |||| |||||||| |||||||||| || |||| ||||||||||    
T  27624083 acactgacacgacaccgacacatgtgattagattgaattatatccttttatcaaaatttt 27624142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 28663550 - 28663498
Alignment:
Q  136 cgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||||||||| | | ||| ||||||||||||||||||||||||||||||||    
T  28663550 cgacaccaacact-gcgtttacattgaattatgtcattttctcaaaattttatc 28663498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 30982834 - 30982923
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||| ||||||| |||||||  |||| ||||||||||| |||||| | |||| | |||| ||||| |||||||||||    
T  30982834 aggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgattttctcaaa 30982923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 24613662 - 24613746
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||| |||||| ||||||| |||||||  |||| |||| |||||| ||||||||  ||| |||||||||||| |||||||||||    
T  24613662 tgtcctggtgtcagacacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaa 24613746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 39619053 - 39619092
Alignment:
Q  77 ggacacttctgattgaaggcatgtcccggtgtccgacacg 116  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  39619053 ggacacttctgattgaaggtgtgtcccggtgtccgacacg 39619092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 10164862 - 10164904
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaatttt 186  Q
    ||||||||||||| |||||||||||||||||| |||| |||||    
T  10164862 acacttgtgattacattgaattatgtcattttttcaagatttt 10164904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 181
Target Start/End: Original strand, 14465309 - 14465339
Alignment:
Q  151 tgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||||||||||||||||||||||    
T  14465309 tgattaaattgaattatgtcattttctcaaa 14465339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 5225569 - 5225658
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||| |||||| | ||||||||||| ||||  |||||||||| |||| | | |||  |||||||||||||||| |||||||    
T  5225569 aggcgtgtcccggggtccgatatgtatcgtgtccgacaccaacacgacaccgacacatattattgcattgaattatgtcattatctcaaa 5225658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 5654606 - 5654662
Alignment:
Q  151 tgattaaattgaattatgtcattttctcaaaattttatctgtggctgacatgtctgtg 208  Q
    |||||| |||||||||||||||||||||||| | ||||| ||| | ||||||||||||    
T  5654606 tgattacattgaattatgtcattttctcaaattattatcagtgtc-gacatgtctgtg 5654662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 10635037 - 10634996
Alignment:
Q  148 ttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||| | |||||||||||||||||| |||||||||||||    
T  10635037 ttgtgataacattgaattatgtcattttttcaaaattttatc 10634996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 13484075 - 13484030
Alignment:
Q  144 acacttgtgattaaatt-gaattatgtcattttctcaaaattttat 188  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  13484075 acacttgtgattacatttgaattatgttattttctcaaaattttat 13484030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 19482766 - 19482694
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtccac-actgacacgacaccaacacttgtgattaaattgaattatgt 169  Q
    |||||| ||||| ||||||| |||||||||  || |||||||||||||||||||| |||| |  |||||||||    
T  19482766 tgtcccagtgtcggacacgtgtcgtgtccaataccgacacgacaccaacacttgtaattacaccgaattatgt 19482694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 35062502 - 35062451
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||||||||| |||||| |||||||||| | ||||| |||||||||||||    
T  35062502 gacaccaacacttatgattacattgaattatattatttt-tcaaaattttatc 35062451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 27733966 - 27733853
Alignment:
Q  77 ggacacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtccaca-ctgacacgacaccaacacttgtgattaaattgaattatgtcatttt 175  Q
    |||||||||||||||||||| ||| | ||||||||||| |||| |||||     | |||| |||||||||||||||||||| |||||||||| |||||||    
T  27733966 ggacacttctgattgaaggcgtgttcgggtgtccgacaagtattgtgtcggtgtccgacatgacaccaacacttgtgattacattgaattatatcatttt 27733867  T
Q  176 ctcaaaattttatc 189  Q
    ||||||||||||||    
T  27733866 ctcaaaattttatc 27733853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 22652074 - 22651990
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||| ||||| | |||||||| |||| ||||||||||| |||||||| |||| |||||||||||| ||||| |||||    
T  22652074 tgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaa 22651990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 10497758 - 10497869
Alignment:
Q  79 acacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttct 177  Q
    |||| ||||||||||||| |||||||||||  |||| ||||  ||| | |||| ||||||| ||  ||||||||||||| ||  |||||||| |||||||    
T  10497758 acacctctgattgaaggcgtgtcccggtgtttgacatgtattatgttcgacaccgacacgatactgacacttgtgattacatcaaattatgttattttct 10497857  T
Q  178 caaaattttatc 189  Q
    ||||||||||||    
T  10497858 caaaattttatc 10497869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 26915201 - 26915293
Alignment:
Q  92 aaggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||| ||||||  |||| |||||||||||||||| |||| ||||||||||      ||||||||| ||| ||||||||||||||||||||||||||||    
T  26915201 aaggcgtgtcccaatgtctgacacgtatcgtgtccgacaccgacacgacac------ttgtgattacattaaattatgtcattttctcaaaattttatc 26915293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 31119138 - 31119097
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattt 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  31119138 acacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 21465497 - 21465426
Alignment:
Q  111 gacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||| || ||||||| | ||||| |||||    
T  21465497 gacacgtgtcgtgtccgacactgacacgacaccaacacttgtaattacatcgaattatatgattttttcaaa 21465426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 42874573 - 42874534
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaat 183  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  42874573 acacttgtgattacattgaattatgtcattttctcaaaat 42874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 29447066 - 29447155
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| ||||| |||||| ||||| | |||||||| |||| |||| |||||| ||||||||  ||| |||||||||||| |||||||||||    
T  29447066 aggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaa 29447155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 2572017 - 2572101
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||||||| || ||||||| |||||||| |||| ||||||||||| |||||||| |||| | | |||||||| ||||| |||||    
T  2572017 tgtcccggtatcggacacgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgattttttcaaa 2572101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 24295138 - 24295190
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||| ||||||||||||| ||| |||| ||||||||||||| |||||||||    
T  24295138 gacaccgacacttgtgattacattaaattgtgtcattttctcacaattttatc 24295190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 2652455 - 2652345
Alignment:
Q  79 acacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttct 177  Q
    |||||| ||||||||||||||| ||||| ||  |||| | || ||||  |||| ||||| ||| | ||||||||||||| ||| ||||||||||||||||    
T  2652455 acacttttgattgaaggcatgttccggtatctaacacatgtcatgtcttacacagacaccacatcgacacttgtgattacatt-aattatgtcattttct 2652357  T
Q  178 caaaattttatc 189  Q
     |||| ||||||    
T  2652356 aaaaaatttatc 2652345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 3954388 - 3954431
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaatttta 187  Q
    |||| ||||||||||||||| || ||||||||||||||||||||    
T  3954388 acacatgtgattaaattgaaatacgtcattttctcaaaatttta 3954431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 22600579 - 22600536
Alignment:
Q  145 cacttgtgattaaattgaattatgtcattttctcaaaattttat 188  Q
    |||||||||||| ||||||||||||||||||||  |||||||||    
T  22600579 cacttgtgattatattgaattatgtcattttctttaaattttat 22600536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 6960692 - 6960729
Alignment:
Q  152 gattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  6960692 gattacattaaattatgtcattttctcaaaattttatc 6960729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 31548289 - 31548338
Alignment:
Q  132 gacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||| |||| |||||||| |||||||||||||||||| |||||    
T  31548289 gacatgacaccgacacatgtgattacattgaattatgtcattttatcaaa 31548338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 34073986 - 34074031
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||| |||||| ||| |||||||||||||| |||||||||||||    
T  34073986 acacttatgattacattaaattatgtcattttttcaaaattttatc 34074031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 5307128 - 5307080
Alignment:
Q  127 acactgacacgacaccaacacttgtgattaaattgaattatgtcatttt 175  Q
    |||| ||||||||||| |||||| |||||  ||||||||||||||||||    
T  5307128 acacggacacgacaccgacacttatgatttcattgaattatgtcatttt 5307080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 29510265 - 29510349
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||| ||||||  |||||||| |||| ||||| ||||| |||||||| |||| | |||||| ||| ||||| |||||    
T  29510265 tgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaattttgtgattttttcaaa 29510349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 43585958 - 43586062
Alignment:
Q  79 acacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtccacactgacacgacaccaacacttgtgattaaattgaattatgtcattttctc 178  Q
    |||||||||||||||||  |||||  ||||| ||||||||||||||||          |||||| ||||||||||||| |||||||||||||||||||||    
T  43585958 acacttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtcc----------gacaccgacacttgtgattacattgaattatgtcattttctc 43586047  T
Q  179 aaaattttatctgtg 193  Q
    |||||||||||||||    
T  43586048 aaaattttatctgtg 43586062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 24067365 - 24067263
Alignment:
Q  84 tctgattgaaggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaa 182  Q
    ||||||||||||||||||   |||| || ||||| | |||||| |||| |||| || ||||||||||||||||| ||||||||||||||||||| |||||    
T  24067365 tctgattgaaggcatgtcttagtgttcggcacgtgttgtgtccgacaccgacatgaaaccaacacttgtgattacattgaattatgtcattttcacaaaa 24067266  T
Q  183 ttt 185  Q
    |||    
T  24067265 ttt 24067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 13501086 - 13501131
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  13501086 acacttgtgattacattgaattatgtcattttcttaaaattttatc 13501131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 14450803 - 14450845
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaatttt 186  Q
    ||||||||||||| |||||||||||| ||||||||||||||||    
T  14450803 acacttgtgattacattgaattatgtgattttctcaaaatttt 14450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 37419846 - 37419757
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||| |||||| ||||||||| |||| |||||||||||  ||||||| |||| | |||||| ||| ||||| |||||    
T  37419846 aggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaattttgtgattttttcaaa 37419757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 8300180 - 8300224
Alignment:
Q  71 ttgcgtggacacttctgattgaaggcatgtcccggtgtccgacac 115  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||||    
T  8300180 ttgcatggacacttctgattgaaggcgtgtcccggtgtccaacac 8300224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 17895820 - 17895942
Alignment:
Q  63 aggctttgttgcgtggacacttctgattgaaggcatgtcccggtgtccgacacgtatcgtg-tccacactgacacgacaccaacacttgtgattaaattg 161  Q
    ||||| |||||| ||||||||| ||||||||||| |||||   | |||||||||||||||| || ||||  |||| ||| |  ||||||||     ||||    
T  17895820 aggctctgttgcatggacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacaccacatcggcacttgtg-----attg 17895914  T
Q  162 aattatgtcattttctcaaaattttatc 189  Q
    ||| || |||||||||||||||||||||    
T  17895915 aatcatctcattttctcaaaattttatc 17895942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 42665665 - 42665614
Alignment:
Q  138 acaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||||||| |||||||| ||||||| ||||||| || |||||||||||||    
T  42665665 acaccaacacatgtgattacattgaatcatgtcatcttttcaaaattttatc 42665614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 24067808 - 24067758
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttctcaaaatttta 187  Q
    |||||| ||||||||||||  ||| ||||||| ||||||||||||||||||    
T  24067808 gacaccgacacttgtgatttcatttaattatgacattttctcaaaatttta 24067758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 11439850 - 11439801
Alignment:
Q  140 accaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||| ||||||||||| | |||||||||| ||||||||| |||||||||    
T  11439850 accaatacttgtgattacactgaattatgttattttctcataattttatc 11439801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 16630846 - 16630813
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttct 177  Q
    |||| |||||||||||||||||||||||||||||    
T  16630846 acacatgtgattaaattgaattatgtcattttct 16630813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 18512150 - 18512195
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||| |||||||| |||||||||| | |||||||||||||||||||    
T  18512150 acacatgtgattacattgaattatattattttctcaaaattttatc 18512195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 33884110 - 33884057
Alignment:
Q  136 cgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||| |||||||| |||| | ||||| |||||||||||||| |||||||||    
T  33884110 cgacaccgacacttgtaattacactgaatcatgtcattttctcacaattttatc 33884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 2356379 - 2356407
Alignment:
Q  157 aattgaattatgtcattttctcaaaattt 185  Q
    |||||||||||||||||||||||||||||    
T  2356379 aattgaattatgtcattttctcaaaattt 2356407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 37211893 - 37211937
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttat 188  Q
    |||||||| |||| |||||||| |||||||||||| |||||||||    
T  37211893 acacttgtaattacattgaattgtgtcattttctcgaaattttat 37211937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 785395 - 785509
Alignment:
Q  77 ggacacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcatt-t 174  Q
    |||||||||||||||||||  ||||| ||||||||||||  ||| ||| | |||| ||||||||||| ||||||||||||| |||||||||||||||| |    
T  785395 ggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatgttcgacaccgacacgacaccgacacttgtgattacattgaattatgtcattat 785494  T
Q  175 tctcaaaattttatc 189  Q
    | | |||||||||||    
T  785495 tttgaaaattttatc 785509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 19369880 - 19369823
Alignment:
Q  132 gacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19369880 gacacgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 19369823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 6751882 - 6751935
Alignment:
Q  136 cgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6751882 cgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 6751935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 10031623 - 10031576
Alignment:
Q  142 caacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10031623 caacacttgtgattacattgaattatgtcattttctcaaaattttatc 10031576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 16766800 - 16766711
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||| ||||||| | |||||| |||| ||||||||||| |||||||| |||| | |||||||||| ||||| |||||    
T  16766800 aggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaa 16766711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 22746020 - 22745963
Alignment:
Q  132 gacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||||||| ||||||||||||| |||||| |||  ||||||||||||||||||||    
T  22746020 gacacgacaccgacacttgtgattacattgaaatataacattttctcaaaattttatc 22745963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 26178591 - 26178542
Alignment:
Q  77 ggacacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtcc 126  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  26178591 ggacacttctgattgaaggtatgtcccgatgtccgacacgtgtcgtgtcc 26178542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 1334720 - 1334667
Alignment:
Q  136 cgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||||| ||| ||||||||| ||||||||||||| |||| |||||||||||||    
T  1334720 cgacaccgacatttgtgattacattgaattatgtccttttttcaaaattttatc 1334667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 5579705 - 5579660
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||||||| || |||||| |||||||||||||||||||||||||    
T  5579705 acacttgtgactacattgaactatgtcattttctcaaaattttatc 5579660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 6284658 - 6284706
Alignment:
Q  133 acacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||| ||||| |||||||||||| ||||||||||||||||||||    
T  6284658 acactacactaacacatgtgattaaattcaattatgtcattttctcaaa 6284706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 16503733 - 16503681
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||||||||| ||||||| |||||||||| |  ||||||||||||||||||    
T  16503733 gacaccaacactagtgattacattgaattatatagttttctcaaaattttatc 16503681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 29959217 - 29959181
Alignment:
Q  153 attaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattttatc 29959181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 4118308 - 4118378
Alignment:
Q  112 acacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||| |||||| |||||||||| | |||||||||||| |||| ||| |||||||| ||||| |||||    
T  4118308 acacgtattgtgtccgacactgacacaaaaccaacacttgtaattacatttaattatgtgattttttcaaa 4118378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 5635903 - 5635940
Alignment:
Q  151 tgattaaattgaattatgtcattttctcaaaattttat 188  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  5635903 tgattatattgaattatgtcattttcttaaaattttat 5635940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 9024172 - 9024221
Alignment:
Q  132 gacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||||||||  |||| | |||||| ||||||||||||||||||||||||    
T  9024172 gacacgacactgacacatatgattacattgaattatgtcattttctcaaa 9024221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 10158035 - 10157998
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  10158035 acacatgtgattacattgaattatgtcattttctcaaa 10157998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 31385022 - 31384934
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||  ||||||| |||||||| ||||| |||||||||  |||||||| |||| | |||||||||| ||||| |||||    
T  31385022 aggcgtgtcccggtgtaggacacgtgtcgtgtccaacact-acacgacactgacacttgtaattacactgaattatgtgattttttcaaa 31384934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 16516999 - 16516947
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||| ||||| ||||||| |||||||||| |  ||||||||||||||||||    
T  16516999 gacaccgacactagtgattacattgaattatatagttttctcaaaattttatc 16516947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 26402680 - 26402735
Alignment:
Q  136 cgacaccaacacttgtgattaaattgaattatgtca--ttttctcaaaattttatc 189  Q
    ||||||| ||||||||||||| | ||||||||||||  |||| |||||||||||||    
T  26402680 cgacaccgacacttgtgattacactgaattatgtcattttttttcaaaattttatc 26402735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 9053 - 8954
Alignment:
Q  78 gacacttctgattgaaggcatgtcccggtgtccgacacgtatcgtgtccacactgacacgacaccaacacttgtgattaaattgaattatgtcattttct 177  Q
    ||||||||||||||||||| ||||||||||||||||||           |||| |||| |||||| |||||||||||||  |||||||||||||||||||    
T  9053 gacacttctgattgaaggcgtgtcccggtgtccgacac-----------acac-gacatgacaccgacacttgtgattacgttgaattatgtcattttct 8966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 8688 - 8750
Alignment:
Q  127 acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||||||||||| | ||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  8688 acactgacacgacaaccacacttgtggttacattgaatcatgtcattttctcaaaattttatc 8750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 8653 - 8685
Alignment:
Q  77 ggacacttctgattgaaggcatgtcccggtgtc 109  Q
    |||||||||||||||||||||||||||||||||    
T  8653 ggacacttctgattgaaggcatgtcccggtgtc 8685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 18104 - 18161
Alignment:
Q  132 gacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    ||||| ||||||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  18104 gacacaacaccaacacttgcgattacattgaattatgttattttctcaaaattttatc 18161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 4987247 - 4987336
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcca-cactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||| ||||||| ||||||||| ||| |||||| ||||||||||||| |||| | |||||||||| ||||| |||||    
T  4987247 aggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaattatgtgattttttcaaa 4987336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 15864308 - 15864251
Alignment:
Q  132 gacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||| ||||||    
T  15864308 gacacgacaccaacactaatgattatattgaattatgtcattttctcaaaactttatc 15864251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 49179714 - 49179768
Alignment:
Q  135 acgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||||| ||||||||||||| || ||||||||||| |||||||||||||||||    
T  49179714 acgacaccgacacttgtgattacatcgaattatgtcactttctcaaaattttatc 49179768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 14338484 - 14338536
Alignment:
Q  137 gacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||| ||| ||||||||| |||||||||||||||||| |||||||||||||    
T  14338484 gacaccgacatttgtgattacattgaattatgtcattttttcaaaattttatc 14338536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 34834879 - 34834922
Alignment:
Q  77 ggacacttctgattgaaggcatgtcccggtgtccgacacgtatc 120  Q
    |||||||||||||||||||| ||||||||||||||||| |||||    
T  34834879 ggacacttctgattgaaggcgtgtcccggtgtccgacatgtatc 34834922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 44427905 - 44427855
Alignment:
Q  131 tgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||| |||| |||||||| |||| |||||||||||||||||||    
T  44427905 tgacacgacaccgacacatgtgattacattggattatgtcattttctcaaa 44427855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 14832202 - 14832113
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||| ||||||| |||||||| | || ||||||||||  |||||||| |||| ||||| |||||| ||||| |||||    
T  14832202 aggcgtgtcccggtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattacattgagttatgtgattttttcaaa 14832113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 6984823 - 6984771
Alignment:
Q  136 cgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttat 188  Q
    ||||||| || |||||||||| |||||||| ||| ||||||||||||||||||    
T  6984823 cgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttat 6984771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 11093634 - 11093584
Alignment:
Q  131 tgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||||||||||||||| | ||||||  ||||||||||||||||| |||||    
T  11093634 tgacacgacaccaacacatctgattactttgaattatgtcattttttcaaa 11093584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 19323443 - 19323493
Alignment:
Q  131 tgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| ||||||  |||| |||||||||||| ||||||||||||||||||||    
T  19323443 tgacgcgacacttacacatgtgattaaattcaattatgtcattttctcaaa 19323493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 13005479 - 13005446
Alignment:
Q  142 caacacttgtgattaaattgaattatgtcatttt 175  Q
    ||||||||||||||| ||||||||||||||||||    
T  13005479 caacacttgtgattatattgaattatgtcatttt 13005446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 52558141 - 52558181
Alignment:
Q  149 tgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||||| ||||||||||||| |||||||||| |||||||    
T  52558141 tgtgattacattgaattatgtccttttctcaaatttttatc 52558181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 18946003 - 18946083
Alignment:
Q  106 tgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattt 185  Q
    |||||||||||| |||||||  |||| ||||  ||||  ||||| ||||||| ||||||||||||||||||||||||||||    
T  18946003 tgtccgacacgtgtcgtgtcagacaccgacaatacactcacactcgtgattacattgaattatgtcattttctcaaaattt 18946083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 6612127 - 6612216
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| ||||| |||||| ||||| |||||||||| |||  ||||||||||| |||||||| |||| | |||||||||| ||||| |||||    
T  6612127 aggcgtgtcctggtgtcggacacatatcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaa 6612216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 32461420 - 32461508
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||| ||||| ||||||| |||||||| |||| ||||| |||||||||||||| |||| ||| |||||||| ||||| |||||    
T  32461420 aggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacac-acaccaacacttgtaattacattaaattatgtgattttttcaaa 32461508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 43966865 - 43966816
Alignment:
Q  136 cgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattt 185  Q
    |||||||||||| |||||||| |||||||| | |||||||||||||||||    
T  43966865 cgacaccaacacatgtgattacattgaattgtatcattttctcaaaattt 43966816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 24462267 - 24462319
Alignment:
Q  133 acacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattt 185  Q
    |||||||||  | ||||||||||| |||||||||||||||||| |||||||||    
T  24462267 acacgacactgaaacttgtgattacattgaattatgtcattttttcaaaattt 24462319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 40176665 - 40176609
Alignment:
Q  133 acacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||||||  |||| |||||||| ||||||| | ||||||||||||||||||||||    
T  40176665 acacgacactgacacatgtgattacattgaatgaagtcattttctcaaaattttatc 40176609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 3451924 - 3451869
Alignment:
Q  126 cacactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    ||||| |||||||||||||||| |||||||||||| |||||  || ||||||||||    
T  3451924 cacaccgacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaa 3451869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 6427415 - 6427364
Alignment:
Q  130 ctgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||||||||| | | |||| |||||||||||| |||||||||||    
T  6427415 ctgacacgacaccaacacatataattacattgaattatgtgattttctcaaa 6427364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 47989600 - 47989517
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcatttt 175  Q
    |||| ||||||| |||| |||| || |||||||| |||| ||||||||||| |||||||| |||| | |||||||||| |||||    
T  47989600 aggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgatttt 47989517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 181
Target Start/End: Complemental strand, 2445914 - 2445884
Alignment:
Q  151 tgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||||||||||||||||||||||    
T  2445914 tgattaaattgaattatgtcattttctcaaa 2445884  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 7988451 - 7988492
Alignment:
Q  136 cgacaccaacacttgtgattaaattgaattatgtcattttct 177  Q
    |||||||||||||| |||||| |||||||||||||| |||||    
T  7988451 cgacaccaacacttatgattacattgaattatgtcactttct 7988492  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 8203888 - 8203835
Alignment:
Q  128 cactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||| || || |||||||||||||| ||| | ||||||||||||||||||    
T  8203888 cactgacatgagactaacacttgtgattacattcacttatgtcattttctcaaa 8203835  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 40686766 - 40686811
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttatc 189  Q
    |||||| |||||| |||||||||| ||||||| |||||||||||||    
T  40686766 acacttatgattacattgaattatatcattttatcaaaattttatc 40686811  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 1486671 - 1486754
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtccacactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||| |||||||||||| ||||||| ||||||||     ||||||||||| |||||| | |||| | |||||||||| ||||| |||||    
T  1486671 aggcgtgtcccggtgtcggacacgtgtcgtgtcc-----gacacgacaccgacacttataattacactgaattatgtgattttttcaaa 1486754  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 14332454 - 14332422
Alignment:
Q  149 tgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||| ||||||||||||||||||||||||    
T  14332454 tgtgattacattgaattatgtcattttctcaaa 14332422  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 27471527 - 27471611
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtcca-cactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||| ||||||| |||| |||| ||| || | ||||||||||| ||| |||| | ||||||||||  ||||||||||    
T  27471527 tgtcccggtgtcggacacgtgtcgtatccaacaccgatatgacaccaacacatgtaattacactgaattatgtgcttttctcaaa 27471611  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 28170432 - 28170389
Alignment:
Q  144 acacttgtgattaaattgaattatgtcattttctcaaaattttat 188  Q
    |||||||| |||| |||||||||||||||||| ||||||||||||    
T  28170432 acacttgttattacattgaattatgtcatttt-tcaaaattttat 28170389  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 40917852 - 40917788
Alignment:
Q  93 aggcatgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgatta 156  Q
    |||| |||||||||||| ||||||| |||||||| |||| ||||||||||| | |||||| ||||    
T  40917852 aggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacaccgagacttgtaatta 40917788  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 53278 - 53194
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaa 181  Q
    |||||||||||| ||||||| || ||||| |||| |||||| |||| |||||| | |||| | |||||||||| |||||||||||    
T  53278 tgtcccggtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtgattttctcaaa 53194  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 44484 - 44576
Alignment:
Q  96 catgtcccggtgtccgacacgtatcgtgtcca-cactgacacgacaccaacacttgtgattaaattgaattatgtcattttctcaaaatttta 187  Q
    |||||||| ||||| ||||||| | ||||||| ||| ||||||| ||| |||| | | |||| | |||||||||| ||||||||||| |||||    
T  44484 catgtcccagtgtcggacacgtgttgtgtccaacaccgacacgataccgacacatataattacactgaattatgtgattttctcaaattttta 44576  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 137878 - 137798
Alignment:
Q  98 tgtcccggtgtccgacacgtatcgtgtcc-acactgacacgacaccaacacttgtgattaaattgaattatgtcattttct 177  Q
    |||| ||||||| |||| ||| ||||||| ||||||||||||||||||||| | ||| || | |||||| ||| |||||||    
T  137878 tgtctcggtgtcggacatgtaccgtgtccgacactgacacgacaccaacacatatgactacactgaattgtgtgattttct 137798  T

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