View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19762_low_38 (Length: 246)

Name: NF19762_low_38
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19762_low_38
NF19762_low_38
[»] chr2 (14 HSPs)
chr2 (1-179)||(4589502-4589700)
chr2 (202-241)||(19549456-19549496)
chr2 (194-237)||(22267537-22267580)
chr2 (194-241)||(34367989-34368036)
chr2 (199-237)||(7302140-7302178)
chr2 (200-237)||(24393269-24393307)
chr2 (200-241)||(4589717-4589758)
chr2 (200-237)||(30019947-30019984)
chr2 (200-237)||(30040711-30040748)
chr2 (200-237)||(30110189-30110226)
chr2 (200-237)||(30234849-30234886)
chr2 (200-237)||(39761462-39761499)
chr2 (201-240)||(7201528-7201568)
chr2 (195-238)||(42475104-42475148)
[»] chr1 (12 HSPs)
chr1 (195-231)||(5864186-5864222)
chr1 (194-237)||(29987105-29987149)
chr1 (202-241)||(10889344-10889383)
chr1 (210-241)||(28832181-28832212)
chr1 (193-239)||(48103160-48103206)
chr1 (194-237)||(2665295-2665340)
chr1 (200-237)||(28712535-28712572)
chr1 (201-237)||(29251778-29251815)
chr1 (200-239)||(17221519-17221559)
chr1 (194-237)||(29233967-29234011)
chr1 (194-237)||(33020036-33020080)
chr1 (205-237)||(42259453-42259485)
[»] chr4 (14 HSPs)
chr4 (200-238)||(27655754-27655792)
chr4 (193-237)||(38297966-38298010)
chr4 (199-233)||(1332932-1332966)
chr4 (202-239)||(20403169-20403207)
chr4 (199-235)||(17216127-17216164)
chr4 (201-237)||(44221471-44221508)
chr4 (204-237)||(49949358-49949391)
chr4 (194-237)||(19908716-19908760)
chr4 (194-237)||(22630353-22630397)
chr4 (194-237)||(23775542-23775586)
chr4 (194-237)||(37930840-37930884)
chr4 (193-237)||(47018305-47018349)
chr4 (199-235)||(50442746-50442782)
chr4 (200-239)||(51436605-51436645)
[»] chr5 (9 HSPs)
chr5 (200-237)||(22498966-22499003)
chr5 (194-237)||(39914925-39914968)
chr5 (202-239)||(17144501-17144539)
chr5 (212-241)||(13796350-13796379)
chr5 (212-241)||(31708158-31708187)
chr5 (200-237)||(35412981-35413018)
chr5 (199-238)||(1642357-1642397)
chr5 (194-241)||(5107238-5107286)
chr5 (201-237)||(9241783-9241819)
[»] scaffold0334 (1 HSPs)
scaffold0334 (194-237)||(5206-5250)
[»] chr7 (7 HSPs)
chr7 (194-241)||(3671844-3671892)
chr7 (194-241)||(45088896-45088943)
chr7 (199-237)||(3533007-3533045)
chr7 (210-239)||(6768717-6768746)
chr7 (194-237)||(1399186-1399230)
chr7 (194-237)||(27263365-27263409)
chr7 (194-237)||(30857272-30857316)
[»] chr6 (7 HSPs)
chr6 (194-237)||(10278477-10278521)
chr6 (194-237)||(8810664-8810707)
chr6 (193-239)||(12808891-12808938)
chr6 (210-239)||(34701169-34701198)
chr6 (213-241)||(12700434-12700462)
chr6 (210-238)||(17113470-17113498)
chr6 (211-239)||(32149160-32149188)
[»] scaffold0896 (1 HSPs)
scaffold0896 (194-237)||(3165-3208)
[»] chr3 (7 HSPs)
chr3 (202-237)||(31797259-31797294)
chr3 (210-241)||(42074123-42074154)
chr3 (199-237)||(46226076-46226114)
chr3 (198-231)||(7101790-7101823)
chr3 (202-235)||(11757064-11757097)
chr3 (210-239)||(28430575-28430604)
chr3 (201-237)||(4216400-4216436)
[»] scaffold0008 (1 HSPs)
scaffold0008 (212-241)||(122911-122940)
[»] chr8 (6 HSPs)
chr8 (200-237)||(20270808-20270845)
chr8 (194-238)||(20469304-20469349)
chr8 (200-237)||(21057436-21057473)
chr8 (194-237)||(9655990-9656034)
chr8 (198-230)||(24033291-24033323)
chr8 (194-241)||(41625214-41625262)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 4589502 - 4589700
Alignment:
Q  1 tttaatgataacatgtgtgaagcaatgacggagtttcttgcattcattaaagcaaaatgcccgaattgaataatagatataggccatgtcaaaatagat- 99  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  4589502 tttaatgataacatgtgtgaaacaatgacagagtttcttgcattcattaaagcaaaatgcccgaattgaataatagatataagccatgtcaaaatagata 4589601  T
Q  100 -------------------ataagcaggccagttttaacattttgggtcttatacagggaaagaaacagttttacagattttctatttacgtatggtga 179  Q
                       || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4589602 ctagaacttgatacaagtaattagcatgccaattttaacattttgggtcttatacagggaaagaaacagttttacagattttctatttacgtatggtga 4589700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 19549496 - 19549456
Alignment:
Q  202 ggttcgaa-ctcagaccttgcatatattatgcattgttcat 241  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  19549496 ggttcgaatctcagaccttgcatatattatgcattgttcat 19549456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 22267580 - 22267537
Alignment:
Q  194 gtggttggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||    
T  22267580 gtggtcggggtttgaactcaaaccttgcatatattatgcattgt 22267537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 34368036 - 34367989
Alignment:
Q  194 gtggttggggttcgaactcagaccttgcatatattatgcattgttcat 241  Q
    ||||| |||||| ||||||||| |||| ||||||||||||||||||||    
T  34368036 gtggtcggggtttgaactcagatcttgtatatattatgcattgttcat 34367989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 7302140 - 7302178
Alignment:
Q  199 tggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  7302140 tggggttcgaacccagaccttgcatattttatgcattgt 7302178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 24393307 - 24393269
Alignment:
Q  200 ggggttcgaac-tcagaccttgcatatattatgcattgt 237  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  24393307 ggggttcgaacctcagaccttgcatatattatgcattgt 24393269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 4589717 - 4589758
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgttcat 241  Q
    ||||||||||| |||| |||||||||||||| ||||||||||    
T  4589717 ggggttcgaacccagatcttgcatatattatacattgttcat 4589758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 30019984 - 30019947
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  30019984 ggggtttgaactcagaccttgcatattttatgcattgt 30019947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 30040711 - 30040748
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  30040711 ggggtttgaactcagaccttgcatattttatgcattgt 30040748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 30110189 - 30110226
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  30110189 ggggtttgaactcagaccttgcatattttatgcattgt 30110226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 30234849 - 30234886
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  30234849 ggggtttgaactcagaccttgcatattttatgcattgt 30234886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 39761499 - 39761462
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  39761499 ggggttcaaacccagaccttgcatatattatgcattgt 39761462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 7201568 - 7201528
Alignment:
Q  201 gggttcgaactc-agaccttgcatatattatgcattgttca 240  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  7201568 gggttcgaactccagactttgcatatattatgcattgttca 7201528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 42475104 - 42475148
Alignment:
Q  195 tggttggggttcgaac-tcagaccttgcatatattatgcattgtt 238  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||||    
T  42475104 tggtcggggttcgaacctcagaccttgcatattttatgcattgtt 42475148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 5864222 - 5864186
Alignment:
Q  195 tggttggggttcgaactcagaccttgcatatattatg 231  Q
    |||||||||||||||||||||||||||||||||||||    
T  5864222 tggttggggttcgaactcagaccttgcatatattatg 5864186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 29987105 - 29987149
Alignment:
Q  194 gtggttggggttcgaactc-agaccttgcatatattatgcattgt 237  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  29987105 gtggttggggttcgaactccagaccttgcatatattatgcattgt 29987149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 10889344 - 10889383
Alignment:
Q  202 ggttcgaactcagaccttgcatatattatgcattgttcat 241  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  10889344 ggttcgaactcagaccttgcatattttatgcattcttcat 10889383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 28832181 - 28832212
Alignment:
Q  210 ctcagaccttgcatatattatgcattgttcat 241  Q
    ||||||||||||||||||||||||||||||||    
T  28832181 ctcagaccttgcatatattatgcattgttcat 28832212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 48103206 - 48103160
Alignment:
Q  193 tgtggttggggttcgaactcagaccttgcatatattatgcattgttc 239  Q
    |||||| ||||||||||| | |||||||||||||||| |||||||||    
T  48103206 tgtggtcggggttcgaacccggaccttgcatatattaagcattgttc 48103160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 2665295 - 2665340
Alignment:
Q  194 gtggttggggttcgaa-ctcagaccttgcata-tattatgcattgt 237  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||    
T  2665295 gtggttggggttcgaacctcagaccttgcatattattatgcattgt 2665340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 28712535 - 28712572
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  28712535 ggggtttgaactccgaccttgcatatattatgcattgt 28712572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 29251815 - 29251778
Alignment:
Q  201 gggttcgaac-tcagaccttgcatatattatgcattgt 237  Q
    |||||||||| |||||||||||||||||||||||||||    
T  29251815 gggttcgaacctcagaccttgcatatattatgcattgt 29251778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 17221519 - 17221559
Alignment:
Q  200 ggggttcgaac-tcagaccttgcatatattatgcattgttc 239  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  17221519 ggggttcgaacctcggaccttgcatatattatgcattgttc 17221559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 29233967 - 29234011
Alignment:
Q  194 gtggttggggttcgaactc-agaccttgcatatattatgcattgt 237  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||    
T  29233967 gtggttggggttcgaaccccagaccttgcatattttatgcattgt 29234011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 33020036 - 33020080
Alignment:
Q  194 gtggttggggttcgaac-tcagaccttgcatatattatgcattgt 237  Q
    |||| ||||||| |||| |||||||||||||||||||||||||||    
T  33020036 gtggctggggtttgaacctcagaccttgcatatattatgcattgt 33020080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 42259453 - 42259485
Alignment:
Q  205 tcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||||| ||||||||||||||||||||||||    
T  42259453 tcgaactctgaccttgcatatattatgcattgt 42259485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 27655792 - 27655754
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgtt 238  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  27655792 ggggttcgaacccagaccttgcatatattatgcattgtt 27655754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 38298010 - 38297966
Alignment:
Q  193 tgtggttggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||| ||||||||||| |||||| |||||||||||||||||||    
T  38298010 tgtggtcggggttcgaacccagaccctgcatatattatgcattgt 38297966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 1332966 - 1332932
Alignment:
Q  199 tggggttcgaactcagaccttgcatatattatgca 233  Q
    |||||||||||||||| ||||||||||||||||||    
T  1332966 tggggttcgaactcagcccttgcatatattatgca 1332932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 20403169 - 20403207
Alignment:
Q  202 ggttcgaact-cagaccttgcatatattatgcattgttc 239  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  20403169 ggttcgaacttcagaccttgcatatattatgcattgttc 20403207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 17216127 - 17216164
Alignment:
Q  199 tggggttcgaact-cagaccttgcatatattatgcatt 235  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17216127 tggggttcgaacttcagaccttgcatatattatgcatt 17216164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 44221508 - 44221471
Alignment:
Q  201 gggttcgaac-tcagaccttgcatatattatgcattgt 237  Q
    |||||||||| |||||||||||||||||||||||||||    
T  44221508 gggttcgaacctcagaccttgcatatattatgcattgt 44221471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 49949391 - 49949358
Alignment:
Q  204 ttcgaactcagaccttgcatatattatgcattgt 237  Q
    ||||||| ||||||||||||||||||||||||||    
T  49949391 ttcgaacccagaccttgcatatattatgcattgt 49949358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 19908760 - 19908716
Alignment:
Q  194 gtggttggggttcgaac-tcagaccttgcatatattatgcattgt 237  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||    
T  19908760 gtggtcggggttcgaacctcggaccttgcatatattatgcattgt 19908716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 22630353 - 22630397
Alignment:
Q  194 gtggttggggttcgaac-tcagaccttgcatatattatgcattgt 237  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||    
T  22630353 gtggtcggggtttgaacctcagaccttgcatatattatgcattgt 22630397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 23775586 - 23775542
Alignment:
Q  194 gtggttggggttcgaactcag-accttgcatatattatgcattgt 237  Q
    ||||||||||||||||| | | |||||||||||||||||||||||    
T  23775586 gtggttggggttcgaaccctggaccttgcatatattatgcattgt 23775542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 37930840 - 37930884
Alignment:
Q  194 gtggttggggttcgaac-tcagaccttgcatatattatgcattgt 237  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||    
T  37930840 gtggtcggggtttgaacctcagaccttgcatatattatgcattgt 37930884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 47018349 - 47018305
Alignment:
Q  193 tgtggttggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||| |||||||||||||   ||||||||||||||||||||||||    
T  47018349 tgtgtttggggttcgaacctggaccttgcatatattatgcattgt 47018305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 50442746 - 50442782
Alignment:
Q  199 tggggttcgaactcagaccttgcatatattatgcatt 235  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  50442746 tgggattcgaacccagaccttgcatatattatgcatt 50442782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 51436605 - 51436645
Alignment:
Q  200 ggggttcgaactcaga-ccttgcatatattatgcattgttc 239  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  51436605 ggggttcgaactccgaaccttgcatatattatgcattgttc 51436645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 22499003 - 22498966
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  22499003 ggggttcgaacccagaccttgcatatattatgcattgt 22498966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 39914968 - 39914925
Alignment:
Q  194 gtggttggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    ||||| ||||||||||| | ||||||||||||||||||||||||    
T  39914968 gtggtcggggttcgaacccggaccttgcatatattatgcattgt 39914925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 17144539 - 17144501
Alignment:
Q  202 ggttcgaa-ctcagaccttgcatatattatgcattgttc 239  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  17144539 ggttcgaatctcagaccttgcatatattatgcattgttc 17144501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 13796379 - 13796350
Alignment:
Q  212 cagaccttgcatatattatgcattgttcat 241  Q
    ||||||||||||||||||||||||||||||    
T  13796379 cagaccttgcatatattatgcattgttcat 13796350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 31708158 - 31708187
Alignment:
Q  212 cagaccttgcatatattatgcattgttcat 241  Q
    ||||||||||||||||||||||||||||||    
T  31708158 cagaccttgcatatattatgcattgttcat 31708187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 35413018 - 35412981
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  35413018 ggggttcgaacccggaccttgcatatattatgcattgt 35412981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 1642397 - 1642357
Alignment:
Q  199 tggggttcgaactc-agaccttgcatatattatgcattgtt 238  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  1642397 tggggttcgaactccagatcttgcatatattatgcattgtt 1642357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 5107238 - 5107286
Alignment:
Q  194 gtggttggggttcgaac-tcagaccttgcatatattatgcattgttcat 241  Q
    ||||| ||||||||||| || |||||||||||||||||||||| |||||    
T  5107238 gtggtcggggttcgaacctcggaccttgcatatattatgcattattcat 5107286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 9241819 - 9241783
Alignment:
Q  201 gggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||||||||| |||||||||| |||||||||||||    
T  9241819 gggttcgaactccgaccttgcatgtattatgcattgt 9241783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 5250 - 5206
Alignment:
Q  194 gtggttggggttcgaac-tcagaccttgcatatattatgcattgt 237  Q
    |||||||||||| |||| |||||||||||||||||||||||||||    
T  5250 gtggttggggtttgaacctcagaccttgcatatattatgcattgt 5206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 3671892 - 3671844
Alignment:
Q  194 gtggttggggttcgaactc-agaccttgcatatattatgcattgttcat 241  Q
    ||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  3671892 gtggtcggggtttgaactccagaccttgcatatattatgcattgttcat 3671844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 45088943 - 45088896
Alignment:
Q  194 gtggttggggttcgaactcagaccttgcatatattatgcattgttcat 241  Q
    ||||| |||||| |||| | ||||||||||||||||||||||||||||    
T  45088943 gtggtcggggtttgaaccccgaccttgcatatattatgcattgttcat 45088896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 3533007 - 3533045
Alignment:
Q  199 tggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||||||||| || |||||||||||||||||||||||    
T  3533007 tggggttcgaacccataccttgcatatattatgcattgt 3533045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 6768717 - 6768746
Alignment:
Q  210 ctcagaccttgcatatattatgcattgttc 239  Q
    ||||||||||||||||||||||||||||||    
T  6768717 ctcagaccttgcatatattatgcattgttc 6768746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 1399230 - 1399186
Alignment:
Q  194 gtggttggggttcgaa-ctcagaccttgcatatattatgcattgt 237  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||    
T  1399230 gtggttagggttcgaatctcagaccttgcatatatcatgcattgt 1399186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 27263409 - 27263365
Alignment:
Q  194 gtggttggggttcgaactcaga-ccttgcatatattatgcattgt 237  Q
    |||| |||||||||||||| || ||||||||||||||||||||||    
T  27263409 gtggctggggttcgaactccgaaccttgcatatattatgcattgt 27263365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 30857316 - 30857272
Alignment:
Q  194 gtggttggggttcgaactcaga-ccttgcatatattatgcattgt 237  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||    
T  30857316 gtggttggggtttgaactcaaaaccttgcatatattatgcattgt 30857272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 10278521 - 10278477
Alignment:
Q  194 gtggttggggttcgaact-cagaccttgcatatattatgcattgt 237  Q
    |||||||||||||||||| |||| |||||||||||||||||||||    
T  10278521 gtggttggggttcgaacttcagatcttgcatatattatgcattgt 10278477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 8810707 - 8810664
Alignment:
Q  194 gtggttggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||    
T  8810707 gtggttcgggtttgaactcagaccttgcatatattatgtattgt 8810664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 12808938 - 12808891
Alignment:
Q  193 tgtggttggggttcgaactc-agaccttgcatatattatgcattgttc 239  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||||    
T  12808938 tgtgtttggggttcgaaccccagaccttgcatatattatgcattgttc 12808891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 34701198 - 34701169
Alignment:
Q  210 ctcagaccttgcatatattatgcattgttc 239  Q
    ||||||||||||||||||||||||||||||    
T  34701198 ctcagaccttgcatatattatgcattgttc 34701169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 12700434 - 12700462
Alignment:
Q  213 agaccttgcatatattatgcattgttcat 241  Q
    |||||||||||||||||||||||||||||    
T  12700434 agaccttgcatatattatgcattgttcat 12700462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 17113470 - 17113498
Alignment:
Q  210 ctcagaccttgcatatattatgcattgtt 238  Q
    |||||||||||||||||||||||||||||    
T  17113470 ctcagaccttgcatatattatgcattgtt 17113498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 32149188 - 32149160
Alignment:
Q  211 tcagaccttgcatatattatgcattgttc 239  Q
    |||||||||||||||||||||||||||||    
T  32149188 tcagaccttgcatatattatgcattgttc 32149160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 3208 - 3165
Alignment:
Q  194 gtggttggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||    
T  3208 gtggttcgggtttgaactcagaccttgcatatattatgtattgt 3165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 31797259 - 31797294
Alignment:
Q  202 ggttcgaactcagaccttgcatatattatgcattgt 237  Q
    ||||||||| ||||||||||||||||||||||||||    
T  31797259 ggttcgaacccagaccttgcatatattatgcattgt 31797294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Complemental strand, 42074154 - 42074123
Alignment:
Q  210 ctcagaccttgcatatattatgcattgttcat 241  Q
    ||||||||||||||||||||||||||||||||    
T  42074154 ctcagaccttgcatatattatgcattgttcat 42074123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 46226076 - 46226114
Alignment:
Q  199 tggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  46226076 tggggttcgaacccggaccttgcatatattatgcattgt 46226114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 7101790 - 7101823
Alignment:
Q  198 ttggggttcgaactcagaccttgcatatattatg 231  Q
    ||||||||||||||| ||||||||||||||||||    
T  7101790 ttggggttcgaactcggaccttgcatatattatg 7101823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 11757064 - 11757097
Alignment:
Q  202 ggttcgaactcagaccttgcatatattatgcatt 235  Q
    ||||||||||| ||||||||||||||||||||||    
T  11757064 ggttcgaactccgaccttgcatatattatgcatt 11757097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 28430575 - 28430604
Alignment:
Q  210 ctcagaccttgcatatattatgcattgttc 239  Q
    ||||||||||||||||||||||||||||||    
T  28430575 ctcagaccttgcatatattatgcattgttc 28430604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 4216400 - 4216436
Alignment:
Q  201 gggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||||||| | ||||||||||||||||||||||||    
T  4216400 gggttcgaaccccgaccttgcatatattatgcattgt 4216436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 122940 - 122911
Alignment:
Q  212 cagaccttgcatatattatgcattgttcat 241  Q
    ||||||||||||||||||||||||||||||    
T  122940 cagaccttgcatatattatgcattgttcat 122911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 20270808 - 20270845
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||||||||||||  |||||||||||||||||||||    
T  20270808 ggggttcgaactcaggtcttgcatatattatgcattgt 20270845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 20469304 - 20469349
Alignment:
Q  194 gtggttggggttcgaactcaga-ccttgcatatattatgcattgtt 238  Q
    |||| |||||||||||||| || |||||||||||||||||||||||    
T  20469304 gtggctggggttcgaactccgaaccttgcatatattatgcattgtt 20469349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 21057436 - 21057473
Alignment:
Q  200 ggggttcgaactcagaccttgcatatattatgcattgt 237  Q
    |||||||||||||||  |||||||||||||||||||||    
T  21057436 ggggttcgaactcaggtcttgcatatattatgcattgt 21057473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 9655990 - 9656034
Alignment:
Q  194 gtggttggggttcgaac-tcagaccttgcatatattatgcattgt 237  Q
    ||||||||||||||||| || |||||||||||| |||||||||||    
T  9655990 gtggttggggttcgaacctcggaccttgcatattttatgcattgt 9656034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 24033323 - 24033291
Alignment:
Q  198 ttggggttcgaactcagaccttgcatatattat 230  Q
    ||||||||||||| |||||||||||||||||||    
T  24033323 ttggggttcgaacccagaccttgcatatattat 24033291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 41625262 - 41625214
Alignment:
Q  194 gtggttggggttcgaactc-agaccttgcatatattatgcattgttcat 241  Q
    ||||||||||||||||| | ||||||| ||||||||||||||| |||||    
T  41625262 gtggttggggttcgaaccctagaccttacatatattatgcattattcat 41625214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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