View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_40 (Length: 238)
Name: NF19762_low_40
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 50669313 - 50669105
Alignment:
| Q |
12 |
caaaggcaacaatgacaaacacctttaaatcataacgaaaagtcaaccaataaataacctcattaaagagaacccctattttccgatgatcattagtgga |
111 |
Q |
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| T |
50669313 |
caaaggcaacaatgacaaacacctttaaatcataacgaaaagccaaccaataaatagcctcattaaagagaacccctattttccgatgatcattagtaga |
50669214 |
T |
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| Q |
112 |
aatcatataagcgaagtgagtatcctccatcccaatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggtt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50669213 |
aatcatataagcgaagtgagtatcctccatcccaatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggtt |
50669114 |
T |
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| Q |
212 |
ggatcatag |
220 |
Q |
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||||||||| |
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| T |
50669113 |
ggatcatag |
50669105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 50250602 - 50250780
Alignment:
| Q |
13 |
aaaggcaacaatgacaaacacctttaaatcataacgaaaagtcaaccaataaataacctcattaaagagaacccct---attttccgatgatcattagtg |
109 |
Q |
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| T |
50250602 |
aaaggcaacaataacatagaccaataaatcataacgaaaagccaaccaatgaatagccccattaaagagaacccctcgcttgctacgaggatccaaagtg |
50250701 |
T |
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| Q |
110 |
gaaatcatataagcgaagtgagtatcctccatcccaatttgtttccatgtattatctctcactgagaaaaactcaaaat |
188 |
Q |
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| T |
50250702 |
gaattcatataagctaagtgtgtaccctcaatttcaatttgtttccagatattatttctcaatgaaaaaaactccaaat |
50250780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 7908445 - 7908407
Alignment:
| Q |
144 |
caatttgtttccatgtattatctctcactgagaaaaact |
182 |
Q |
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| T |
7908445 |
caatttctttccatgtattatctctaactgagaaaaact |
7908407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 48705332 - 48705374
Alignment:
| Q |
144 |
caatttgtttccatgtattatctctcactgagaaaaactcaaa |
186 |
Q |
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|||||| ||||||||||||| |||||| ||||||||||||||| |
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| T |
48705332 |
caatttctttccatgtattaactctcaatgagaaaaactcaaa |
48705374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 21979461 - 21979636
Alignment:
| Q |
12 |
caaaggcaacaatgacaaacacctttaaatcataacgaaaagtcaaccaataaataacctcattaaagagaacccctattttccgatgatcattagtgga |
111 |
Q |
| |
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||||||||||||| |||||||| ||||||||| |||||||||||||||| |||| || |||||||| ||||||| ||| |||||||||| ||| |
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| T |
21979461 |
caaaggcaacaataacaaacacagataaatcataccgaaaagtcaaccaatgaatagccctattaaagaaaaccccttgtttggaatgatcattattggg |
21979560 |
T |
|
| Q |
112 |
aatcatataagcgaagtgagtatcctccatcccaatttgtttccatgtattatctctcactgagaaaaactcaaaatttggt |
193 |
Q |
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| ||||||||| ||| |||| | ||| ||||||||||||| ||||||||||||| ||||||| ||| |||| |||| |
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| T |
21979561 |
attcatataagggaaatgagcaccct------caatttgtttccaggtattatctctcaaagagaaaacctccaaatgtggt |
21979636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 179157 - 179113
Alignment:
| Q |
144 |
caatttgtttccatgtattatctctcactgagaaaaactcaaaat |
188 |
Q |
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|||||| |||||||||||||||||||| |||||||| ||| |||| |
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| T |
179157 |
caatttctttccatgtattatctctcaatgagaaaatctccaaat |
179113 |
T |
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