View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_45 (Length: 228)
Name: NF19762_low_45
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 50669391 - 50669609
Alignment:
| Q |
1 |
tgggtatttggagaatttctcagtctttggactttggaggaccataacaaatttcaaatgtgggtgatgaaagattccaagttgcattcatcttggacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50669391 |
tgggtatttggagaatttctcagtctttggactttggaggaccataacaaatttcaaatgtgggtgatgaaagattccaagttgcattcatcttggacta |
50669490 |
T |
|
| Q |
101 |
agactcttattctacagattgatgcagtcattcctaaattttcccctatatgctctacaaagaatggtgacattattggaacagatggtggttctggatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50669491 |
agactcttattctacagattgatgcagtcattcctaaattttcccctatatgctctacaaagaatggtgacattattggaacagatggtggttctggatt |
50669590 |
T |
|
| Q |
201 |
ggtgaaatataataatgat |
219 |
Q |
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||||||||||||||||||| |
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| T |
50669591 |
ggtgaaatataataatgat |
50669609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 213
Target Start/End: Complemental strand, 37826681 - 37826530
Alignment:
| Q |
62 |
gggtgatgaaagattccaagttgcattcatcttggactaagactcttattctacagattgatgcagtcattcctaaattttcccctatatgctctacaaa |
161 |
Q |
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||||||||||||| | ||| ||||||| |||||||||||||||||| || | | |||||||| | |||||| || |||| |||| |||| |||||||| |
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| T |
37826681 |
gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcggattgatgatgccattcccaatttttaccctctatgttctacaaa |
37826582 |
T |
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| Q |
162 |
gaatggtgacattattggaacagatggtggttctggattggtgaaatataat |
213 |
Q |
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| T |
37826581 |
aagtggtgatattattggatcagacggtggtcttggattggtgaagtataat |
37826530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 48147410 - 48147279
Alignment:
| Q |
56 |
aaatgtgggtgatgaaagattccaagttgcattcatcttggactaagactcttattctacagattgatgcagtcattcctaaattttcccctatatgctc |
155 |
Q |
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|||| |||||||||||||| | ||| ||||||| ||||||||||||||||||| | | ||||||| |||||| | ||||||||||||||||| |
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| T |
48147410 |
aaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatgg---cattccctacttttcccctatatgctc |
48147314 |
T |
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| Q |
156 |
tacaaagaatggtgacattattggaacagatggtg |
190 |
Q |
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||||| | ||||||||||||||||||| |||||| |
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| T |
48147313 |
cacaaaaagtggtgacattattggaacaaatggtg |
48147279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 48903264 - 48903364
Alignment:
| Q |
1 |
tgggtatttggagaatttctcagtctttggactttggaggaccataacaaatttcaaatgtgggtgatgaaagattccaagttgcattcatcttggacta |
100 |
Q |
| |
|
|||||||||||||||||||| || || ||| ||||||| || |||| |||||| |||| |||||||||||||| | ||| |||||| |||||||||| |
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| T |
48903264 |
tgggtatttggagaatttcttagcctatgggctttggattacgataataaatttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggacta |
48903363 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
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|
| T |
48903364 |
a |
48903364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 48156040 - 48155989
Alignment:
| Q |
139 |
ttttcccctatatgctctacaaagaatggtgacattattggaacagatggtg |
190 |
Q |
| |
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|||| ||| |||||||||||||| |||||||||||| |||||||||| |||| |
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| T |
48156040 |
ttttacccaatatgctctacaaaaaatggtgacattgttggaacagacggtg |
48155989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 48853131 - 48853198
Alignment:
| Q |
139 |
ttttcccctatatgctctacaaagaatggtgacattattggaacagatggtggttctggattggtgaa |
206 |
Q |
| |
|
|||||||| ||||| | |||||||| |||||| ||||||||||| ||||||| | |||||||||||| |
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| T |
48853131 |
ttttccccaatatgttgtacaaagagtggtgatattattggaacggatggtgatagtggattggtgaa |
48853198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 45365831 - 45365783
Alignment:
| Q |
139 |
ttttcccctatatgctctacaaagaatggtgacattattggaacagatg |
187 |
Q |
| |
|
||||||||| ||||||||||||| | ||||| |||||||||||||||| |
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| T |
45365831 |
ttttcccctttatgctctacaaaaagcggtgatattattggaacagatg |
45365783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 42562025 - 42561874
Alignment:
| Q |
61 |
tgggtgatgaaagattccaagttgcattcatcttggactaagactcttattctacagattgatgcagtcattcctaaattttcccctatatgctctacaa |
160 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||||||||||| |||| |||| | ||| ||| | |||||| | |||| |||| ||| || ||||| |
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| T |
42562025 |
tgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttcttcctatttatgatgacattccctacttttgccctttatcctatacaa |
42561926 |
T |
|
| Q |
161 |
agaatggtgacattattggaacagatggtggttctggattggtgaaatataa |
212 |
Q |
| |
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| |||||||| ||||||||||||||||||||| | ||||||||||||||||| |
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| T |
42561925 |
aaaatggtgatattattggaacagatggtggtaccggattggtgaaatataa |
42561874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 12200789 - 12200866
Alignment:
| Q |
139 |
ttttcccctatatgctctacaaagaatggtgacattattggaacagatggtggttctggattggtgaaatataataat |
216 |
Q |
| |
|
||||||||||||| ||||||||| | |||||| ||||||||||| ||| ||||| |||||||||||| ||||||||| |
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| T |
12200789 |
ttttcccctatatactctacaaaaagtggtgatattattggaactgatagtggtcatggattggtgaagtataataat |
12200866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 12445217 - 12445294
Alignment:
| Q |
139 |
ttttcccctatatgctctacaaagaatggtgacattattggaacagatggtggttctggattggtgaaatataataat |
216 |
Q |
| |
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||||||||||||| ||||||||| | |||||| ||||||||||| ||| ||||| |||||||||||| ||||||||| |
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| T |
12445217 |
ttttcccctatatactctacaaaaagtggtgatattattggaactgatagtggtcatggattggtgaagtataataat |
12445294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 4030399 - 4030332
Alignment:
| Q |
139 |
ttttcccctatatgctctacaaagaatggtgacattattggaacagatggtggttctggattggtgaa |
206 |
Q |
| |
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|||||||| || |||||||||| | |||||| |||||||||||| |||||||| ||| ||||||||| |
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|
| T |
4030399 |
ttttccccaatgtgctctacaataagtggtgatattattggaacatatggtggtactgaattggtgaa |
4030332 |
T |
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