View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19762_low_47 (Length: 220)
Name: NF19762_low_47
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 20909913 - 20910100
Alignment:
| Q |
18 |
atatgttccttcaatgtccccatggcacctggtaagactcgctccatcgtttgcagtgcccgaaatttcttccagctcacggtgccagggcctgcctggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20909913 |
atatgttccttcaatgtccccatggcacctggtaagactcgctccatcgtttgcagtgcccgaaatttcttccagctcacggtgccagggcctgcctggt |
20910012 |
T |
|
| Q |
118 |
ggcaagtaagatttctatattcaatgctttcctttctattctcttcaataaaaccacgagaatattccattctctgctaatttctgtg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20910013 |
ggcaagtaagatttctatattcaatgctttcgtttctattctcttcaataaaaccacgagaatgttccattctctgctaatttctgtg |
20910100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University