View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_5 (Length: 531)
Name: NF19762_low_5
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 25967674 - 25967169
Alignment:
| Q |
18 |
atcaacgaaaaagagatgaaattaatttgtcttgcatgtggaatttttattttaataaatcacgtgggaatttttaattacccgttcatatacataaagt |
117 |
Q |
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| T |
25967674 |
atcaacgaaaaagagataaaattaatttgtcttgcatgtggaatttttattttaataaatcacgtgggaatttttaattacatgttcatatacataaagt |
25967575 |
T |
|
| Q |
118 |
ccaattagaataataattaataagt-------gctagtttgataagtaatttgattgatcatatattaatattttttcatatgatgtcacagattgaagc |
210 |
Q |
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| T |
25967574 |
ccaattagaataataattaataagtaacttcggctagtttgataagtaatttgattgatcatatattaatattttttcatatgatgtcacagattgaagc |
25967475 |
T |
|
| Q |
211 |
accgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccatcgttgatcctgcttctggtgatcaacctct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25967474 |
accgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccattgttgatcctgcttctggtgatcaacctct |
25967375 |
T |
|
| Q |
311 |
cttcaatgaagataaatcaattattgtcacggtaataatattctatagtttattacattttttatactatatagtttttaaagtggtagtaacatataaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25967374 |
cttcaatgaagataaatcaattattgtcacggtaataatattctatagtttattacattttttatactatatagtttttaaagtggtagtaacatataaa |
25967275 |
T |
|
| Q |
411 |
ttttatcataaaattcaggtgaatggagagatctacaatcatgaagacctcaggaaacaattgcctaatcacaaatttcgtacacaatgtgactgtgatg |
510 |
Q |
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| T |
25967274 |
ttttatcataaaattcaggtgaatggagagatctacaatcatgaagacctcaggaaacaattgcctaatcacaaattccgtacacaatgtgactgtgatg |
25967175 |
T |
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| Q |
511 |
ttattg |
516 |
Q |
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|||||| |
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| T |
25967174 |
ttattg |
25967169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 199 - 344
Target Start/End: Complemental strand, 30274833 - 30274688
Alignment:
| Q |
199 |
acagattgaagcaccgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccatcgttgatcctgcttctgg |
298 |
Q |
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||||||||||||||||||| || || |||||||||||||||||||||||||| || |||||| || ||| |||||||||| ||||||||||||||||| |
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| T |
30274833 |
acagattgaagcaccgtggccctgattggagtgggctccaccaacatggtgactgctttttggcacaccaacggttagccatagttgatcctgcttctgg |
30274734 |
T |
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| Q |
299 |
tgatcaacctctcttcaatgaagataaatcaattattgtcacggta |
344 |
Q |
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| T |
30274733 |
ggatcaacctctctttaatgaagacaaatctgtcattgtcacggta |
30274688 |
T |
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