View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_7 (Length: 489)
Name: NF19762_low_7
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 27195726 - 27196197
Alignment:
| Q |
1 |
ggcatctcaaacacttgagtccgttttggtgtctggcgatcgagattttatcattgacaaagatgcgaagaaggtaatatatcttacagcataaatttac |
100 |
Q |
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| T |
27195726 |
ggcatctcaaacacttgagtccgttttggtgtctggcgatcaagattttgtcattgacaaagacgggaagaaggtaatatatcttacaagataaattcac |
27195825 |
T |
|
| Q |
101 |
tggatttggttaagtgattacgccatcattccctctttgtaatttgtt--taataagttagcatttatctctatttcagattccggtaacagaattagag |
198 |
Q |
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| T |
27195826 |
tcgattttgttgagtgactcccccgtcatttcctttttttaatttgttattaataagttagcatttatcttcatttcagattccggtatcagaattagtg |
27195925 |
T |
|
| Q |
199 |
gggaaaactgtcctcctctacttctcagcccactggtgtcctccatgccgtgcgtttcttccaaaactcattgaggcataccataagattaaggcacaaa |
298 |
Q |
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| T |
27195926 |
gggaaaactgtcctcctctacttctcagcccactggtgtcctccatgccgtgcgtttcttccaaaactcattgaggcataccataagattaaggcacaaa |
27196025 |
T |
|
| Q |
299 |
acaatgacgcacttgaagtggttttcatctcaagtgacagggatcaagaatcctttaatgaattctttgcgggaatgccatggttggcacttccctttgg |
398 |
Q |
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| T |
27196026 |
acaatgatgcacttgaagtggttttcatctcaagtgacagggatcaagaatcgtttaatgaattctttgcgggaatgccatggctggcacttccctttgg |
27196125 |
T |
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| Q |
399 |
tgacacaagaaaagaattcttgagtcgcaaattcaaggtatctggcatccccaagctcgtggcgattggacc |
470 |
Q |
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| T |
27196126 |
tgacacgagaaaagaattcttgagtcgcaaattcaaggtatctggcatccccaagctcgtggcgattggacc |
27196197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 27210968 - 27211444
Alignment:
| Q |
1 |
ggcatctcaaacacttgagtccgttttggtgtctggcgatcgagattttatcattgacaaagatgcgaagaaggtaatatatcttacagcataaatttac |
100 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| |||||||||||||| ||||| |||||| || |
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| T |
27210968 |
ggcatctcaaacacttgagtcggttttggtgtctggcgatcaagattttgtcattgagaaagatgggaagaaggtaatatttcttattatataaatatag |
27211067 |
T |
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| Q |
101 |
------tggatttggttaagtgattacgccatcattccctctttgtaatttgtt--taataagttagcatttatctctatttcagattccggtaacagaa |
192 |
Q |
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|||||| ||| ||||||| | |||||| ||||||||| ||||| ||| ||| |||| ||| |||||||| ||| ||||||||||| | ||| |
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| T |
27211068 |
atgtattggattatgttgagtgattcc-ccatcaatccctctttttaattcgttattaacaagtcagcttttatctccattgcagattccggtgtcggaa |
27211166 |
T |
|
| Q |
193 |
ttagaggggaaaactgtcctcctctacttctcagcccactggtgtcctccatgccgtgcgtttcttccaaaactcattgaggcataccataagattaagg |
292 |
Q |
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||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||| |
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| T |
27211167 |
ttaaaggggaagactgtcctcctctacttctcagcccactggtgtcctccatgccgtgagtttcttccaaaactcattgatgcataccttaagatcaaga |
27211266 |
T |
|
| Q |
293 |
cacaaaacaatgacgcacttgaagtggttttcatctcaagtgacagggatcaagaatcctttaatgaattctttgcgggaatgccatggttggcacttcc |
392 |
Q |
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|| || ||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||| |||||||||| |||||||||| |
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| T |
27211267 |
cagaagacaatgatgcacttgaagtggttttcatctctagtgatagggatcaagactcctttgatgaattctttgcggaaatgccatgggtggcacttcc |
27211366 |
T |
|
| Q |
393 |
ctttggtgacacaagaaaagaattcttgagtcgcaaattcaaggtatctggcatccccaagctcgtggcgattggacc |
470 |
Q |
| |
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|||||||||| | ||||||||||| | |||||||||||||||||| ||||||| || ||||| |||||||| ||||| |
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| T |
27211367 |
ctttggtgactcgagaaaagaatttctaagtcgcaaattcaaggtagctggcattcctaagctggtggcgatcggacc |
27211444 |
T |
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