View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_8 (Length: 466)
Name: NF19762_low_8
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 20174624 - 20174843
Alignment:
| Q |
7 |
aagaatttagtttttggaaaccaatatatgcctaggaattttctaaatgttgtaacaattattacaaggcatcaaaggatactctcattgtttgatttga |
106 |
Q |
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| T |
20174624 |
aagagtttagtttttggaaaccaatatatgcctaggaattttctaaatgttgttacaattattacagggcatcaaaggatactgtcattgtttgatttga |
20174723 |
T |
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| Q |
107 |
agaataaaatagcatggagtcatgtaaaattatgtatcatatataaataagagatattcgttttgcctgaatgaagcattgtctacctatctttgcctca |
206 |
Q |
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| T |
20174724 |
agaataaaatagc------tcatgtaaaattatgtatcatatataaataagagatattcgttttgacagaatgaagcattgtctacctatctttgcccca |
20174817 |
T |
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| Q |
207 |
ttagattttgttttgttaaacgttta |
232 |
Q |
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| T |
20174818 |
ttagattttgttttgttaaaccttta |
20174843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 20175115 - 20175214
Alignment:
| Q |
266 |
ctcttcccttcacttctacttctttaaatttaaattctcattttcaaaaacttataactaaagaacttaaattatttttacattaatatcttcattcagt |
365 |
Q |
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| T |
20175115 |
ctcttcccttcacttgtactt---taaatttaaattctcattttcgaaaacttagaactaaagaacttaaattatttttacattaatatcttcattcagt |
20175211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 379
Target Start/End: Original strand, 20175229 - 20175258
Alignment:
| Q |
350 |
aatatcttcattcagtagcattggttcaaa |
379 |
Q |
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| T |
20175229 |
aatatcttcattcagtagcattggttcaaa |
20175258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 30915316 - 30915360
Alignment:
| Q |
274 |
ttcacttctacttctttaaatttaaattctcattttcaaaaactt |
318 |
Q |
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| T |
30915316 |
ttcacttcttcttatttaaatttaaattctcaaattcaaaaactt |
30915360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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