View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_low_9 (Length: 464)
Name: NF19762_low_9
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Complemental strand, 4389583 - 4389143
Alignment:
| Q |
10 |
aagaatatattttccttttattgggaattcagatatgttgggccaataaagctaaaaccaggaggcttaacgtgtctttcccttgttttaataactccca |
109 |
Q |
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| T |
4389583 |
aagaatatattttccctttattgggaattcagatatgttgggccaataaagctaaaaccagaaggcttaacgtgtctttcccttgttttaataactccca |
4389484 |
T |
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| Q |
110 |
attcatgccctagttcataacacttggagggttcaacagtttttgcagaagcattttcaactttcaacatacttcataggctatccttatcactttctcg |
209 |
Q |
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| T |
4389483 |
attcatgccctagttcataacacttggagggttcaacagtttttgcagaagcattttcaactttcaacatacttcataggctatccttatcactttctcg |
4389384 |
T |
|
| Q |
210 |
agacagcaaatg-catcacaccataaagaatcgatcttcaatgaatggcatgagttttgtgtgaaccaaaactctagccgactccatagataaccctttc |
308 |
Q |
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| T |
4389383 |
agacagcaaatggcatcacaccataaagaatcgatcttcaatgaatggcatgagttttgtgtgaaccaaaactctagctgactccatagataaccctttc |
4389284 |
T |
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| Q |
309 |
tccacctctacatgatcaatctttcctatcttatcaataacaagttccatatttttcagaccctaagcatgggttggtattcaaaatatttctagccaaa |
408 |
Q |
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| T |
4389283 |
tccacctctacatgatcaatctttcctatcttatcaataacaagttccatatttttcagaccctaagcatgggttggtattcaaaatatttctagccaaa |
4389184 |
T |
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| Q |
409 |
cgcatcttgctacacactcttccttcattgaccattttctt |
449 |
Q |
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| T |
4389183 |
cgcatcttgctacacactcttccttcattgaccattttctt |
4389143 |
T |
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