View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19763_high_1 (Length: 849)
Name: NF19763_high_1
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19763_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 258 - 665
Target Start/End: Original strand, 10095104 - 10095506
Alignment:
| Q |
258 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcacaggatcaggtatcttgatgaacaaaa |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
10095104 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcaccgga---ggtatcttgatgaacaaaa |
10095200 |
T |
|
| Q |
358 |
gctttgaagaggtcttcttgatcatcctttgaataaaagctttctatccttgatga-atagttacttcaccattagactttgatacccccagtaattgcg |
456 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10095201 |
gctttgaagaggtcttctt---catcctttgaataaaagctttctatccttgaccttatagttacttcaccattagactttgatacccc-agtaattgcg |
10095296 |
T |
|
| Q |
457 |
gtgttgg-atccgttatcatgccttggaaggattggtaggaggtagctgtttttcctttggtgtgaatgtgttggttcggtgatgtttggaggtgcagca |
555 |
Q |
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| T |
10095297 |
gagttgggatccgttatcatgccttggaaggattggtaggaggtagctgtttttcctttggtgtgtgtgtgttggttcggtgatgtttggaggtgcagca |
10095396 |
T |
|
| Q |
556 |
gctggggtgcgtgacctgttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtgcgcctgtttggattttaggca |
655 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10095397 |
gctggggtgcgtgacctgttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtgcgcctgtttggattttaggca |
10095496 |
T |
|
| Q |
656 |
gtgaggctgg |
665 |
Q |
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|||||||||| |
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| T |
10095497 |
gtgaggctgg |
10095506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 258 - 665
Target Start/End: Original strand, 10034740 - 10035137
Alignment:
| Q |
258 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcacaggatcaggtatcttgatgaacaaaa |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
10034740 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcaccgg---aggtatcttgatgaacaaaa |
10034836 |
T |
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| Q |
358 |
gctttgaagaggtcttcttgatcatcctttgaataaaagctttctatccttgatgaatagttacttcaccattagactttgatacccccagtaattgcgg |
457 |
Q |
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| T |
10034837 |
gctttgaagaggtcttct---tcatcctttgaataaaagctttctatactt----tatagttacttcaccattagactttgata-ccccagtaattgcgg |
10034928 |
T |
|
| Q |
458 |
tgtt-ggatccgttatcatgccttggaaggattggtaggaggtagctgtttttcctttggtgtgaatgtgttggttcggtgatgtttggaggtgcagcag |
556 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10034929 |
agttgggatccgttatcatgccttggaaggattggtaggaggtagctgtttttcctttggtgtgtgtgtgttggttcggtgatgtttggaggtgcagcag |
10035028 |
T |
|
| Q |
557 |
ctggggtgcgtgacctgttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtgcgcctgtttggattttaggcag |
656 |
Q |
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| T |
10035029 |
ctggggtgcgtgacctgttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtgcgcctgtttggattttaggcag |
10035128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 40 - 258
Target Start/End: Original strand, 10094860 - 10095078
Alignment:
| Q |
40 |
agagttttttctttctcgctaaggggtgaagccatgtcttggttacattatattcctcccaaattcatagaaacatggaacaaattgaagcaagctttcc |
139 |
Q |
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| T |
10094860 |
agagttttttctttctcgctaaggggtgaagccatgtcttggttacattctattcctcccaaattcatagaaacatggaacaaattgaagcaagctttcc |
10094959 |
T |
|
| Q |
140 |
tcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaataagcttttcacaaaaagatggggagctgttatatgaagtatatatgga |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10094960 |
tcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaataagcttttcacaaaaagatggggagctgttatatgaagtatatatgga |
10095059 |
T |
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| Q |
240 |
agtgcttcaagaaaatact |
258 |
Q |
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||||||||||||||||||| |
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| T |
10095060 |
agtgcttcaagaaaatact |
10095078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 27 - 258
Target Start/End: Original strand, 10034483 - 10034714
Alignment:
| Q |
27 |
caaacaaagccttagagttttttctttctcgctaaggggtgaagccatgtcttggttacattatattcctcccaaattcatagaaacat--ggaacaaat |
124 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
10034483 |
caaacagagccttagagtttt--ctttctcgctaaggggtgaagccatgtcttggttacattctattcctcccaaattcatagaaacatatggaacaaat |
10034580 |
T |
|
| Q |
125 |
tgaagcaagctttcctcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaataagcttttcacaaaaagatggggagctgttata |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10034581 |
tgaagcaagctttcctcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaataagcttttcacaaaaagatggggagctgttata |
10034680 |
T |
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| Q |
225 |
tgaagtatatatggaagtgcttcaagaaaatact |
258 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10034681 |
tgaagtatatatggaagtgcttcaagaaaatact |
10034714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 710 - 840
Target Start/End: Original strand, 10035137 - 10035267
Alignment:
| Q |
710 |
gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttccctttccttgccgcgagtggt |
809 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10035137 |
gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttccctttccttgccgcgagtggt |
10035236 |
T |
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| Q |
810 |
tgtgcgtcttgcatatactcgtcgagaataa |
840 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10035237 |
tgtgcgtcttgcatatactcgtcgagaataa |
10035267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 710 - 840
Target Start/End: Original strand, 10095506 - 10095636
Alignment:
| Q |
710 |
gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttccctttccttgccgcgagtggt |
809 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10095506 |
gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttcccttttcttgccgcgagtggt |
10095605 |
T |
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| Q |
810 |
tgtgcgtcttgcatatactcgtcgagaataa |
840 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10095606 |
tgtgcgtcttgcatatactcgtcgagaataa |
10095636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 23667478 - 23667393
Alignment:
| Q |
122 |
aattgaagcaagctttcctcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaataagcttttcacaaaaa |
207 |
Q |
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||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||| |||| ||||||||| |||||||||||| |
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| T |
23667478 |
aattgaagcaatctttcctccctcaatattcccatgcatccaaagtttctcattcggggaatgaaacaataagtttttcacaaaaa |
23667393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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