View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19763_high_14 (Length: 299)
Name: NF19763_high_14
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19763_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 27365353 - 27365061
Alignment:
| Q |
3 |
ccatgattattgctttcttcctgtgttgtcgcacgcacacctttcttcctcagaggaacctttacgttttgcaggtttacgcttcttcataaaactgcat |
102 |
Q |
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| T |
27365353 |
ccatgattattgctttcttcatgtgttgtcgcacgcacacctttcttcctcagagaaacctttatgttttgcaggtttatgcttccccataaaactgcac |
27365254 |
T |
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| Q |
103 |
gtgttttgcatgttcattcttcttcagaaatcagaagtattgagagttcta------tccaattaatttttccagttcatcgatgttgtgtttgctcttc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27365253 |
gtgttttgcatgttcattcttcttcagaaatcagaagtattgagagttctacttctatccaattaatttttccagttcatcgatgttgtgtttgctcttc |
27365154 |
T |
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| Q |
197 |
atcttctactccattcatttaaggaaaaactccatccaatcatgaaattaaattaatttaaataatggtatttcataaaaattgttgcctttg |
289 |
Q |
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| T |
27365153 |
atcttctactccattcatttaaggaaaaactccatccaatcatgaaattaaattaatttaaataatggtatttcataaaaattgctgcctttg |
27365061 |
T |
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Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 43104591 - 43104300
Alignment:
| Q |
3 |
ccatgattattgctttcttcctgtgttgtcgcacgcacacctttcttcctcagaggaacctttacgttttgcaggtttacgcttcttcataaaactgcat |
102 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |
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| T |
43104591 |
ccatgattattgctttcttcaagt-ttgtcgcacgcacacctttcttcctcagagaaatctttacgttttgcaggtttatgcttcttcataaaactgcac |
43104493 |
T |
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| Q |
103 |
gtgttttgcatgttcattcttcttcagaaatcagaagtattgagagttcta------tccaattaatttttccagttcatcgatgttgtgtttgctcttc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43104492 |
gtgttttgcatgttcattcttcttcagaaatcagaagtattgagagttctacttctatccaattaatttttccagttcattgatgttgtgtttgctcttc |
43104393 |
T |
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| Q |
197 |
atcttctactccattcatttaaggaaaaactccatccaatcatgaaattaaattaatttaaataatggtatttcataaaaattgttgcctttg |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43104392 |
atcttctactccattcatttaaggaaaaactccatccaatcatgaaattaaattaatttaaataatggtatttcataaaaattgttgcctttg |
43104300 |
T |
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