View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19763_low_10 (Length: 374)
Name: NF19763_low_10
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19763_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 37 - 338
Target Start/End: Original strand, 37446792 - 37447094
Alignment:
| Q |
37 |
gattggtcatttggaggaaagttctattggtgatccgaaatgtttgttagaagtgaatattaaaactacaccacaaatattgtaacattgacatagcaga |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37446792 |
gattggtcatttggaggaaagttctattggtgatccgaaatgtttgttagaagtgaatattaaaactgcaccacaaatattgtaacattgacatagcaga |
37446891 |
T |
|
| Q |
137 |
tactttatatttatagtggcacacttatacannnnnnnnnn-aggaaataatggtacacatatacttgtttgtcaaataaatattatttacattatttgt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37446892 |
tactttatatttatagtggcacacttatacatttttttttttaggaaataatggtacacatatacttgtttgtcaaataaatattatttacattatttgt |
37446991 |
T |
|
| Q |
236 |
aaaatttcatttatctatatcatcgcgacatgataaattttactttgacatgattaatttgagtacgagaccaacaatgcatagctttgcaataaagcac |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37446992 |
aaaatttcatttatctatatcatcgcgacatgataaattttactttgacatgattaatttgagtacgagaccaacaatgcatagctttgcaataaagcac |
37447091 |
T |
|
| Q |
336 |
aac |
338 |
Q |
| |
|
||| |
|
|
| T |
37447092 |
aac |
37447094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University