View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19763_low_11 (Length: 358)

Name: NF19763_low_11
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19763_low_11
NF19763_low_11
[»] chr1 (16 HSPs)
chr1 (19-345)||(24233404-24233724)
chr1 (91-338)||(45692879-45693129)
chr1 (276-331)||(25478862-25478917)
chr1 (270-341)||(24242846-24242917)
chr1 (270-328)||(23896139-23896197)
chr1 (272-345)||(24246482-24246555)
chr1 (279-328)||(24629213-24629262)
chr1 (278-341)||(25610955-25611018)
chr1 (270-332)||(24626770-24626832)
chr1 (278-331)||(24634804-24634857)
chr1 (278-331)||(24513055-24513108)
chr1 (140-178)||(25478732-25478770)
chr1 (131-181)||(25611109-25611159)
chr1 (278-328)||(51782798-51782848)
chr1 (273-326)||(24805076-24805129)
chr1 (273-341)||(24221985-24222053)
[»] scaffold0015 (2 HSPs)
scaffold0015 (25-341)||(40370-40689)
scaffold0015 (246-341)||(32318-32413)
[»] chr7 (2 HSPs)
chr7 (140-341)||(1421158-1421359)
chr7 (25-117)||(1421391-1421483)
[»] chr4 (1 HSPs)
chr4 (270-331)||(11032901-11032962)
[»] chr5 (5 HSPs)
chr5 (265-331)||(3181703-3181769)
chr5 (278-329)||(11081812-11081863)
chr5 (278-329)||(23766863-23766914)
chr5 (278-329)||(23816711-23816762)
chr5 (279-328)||(20292995-20293044)
[»] chr3 (19 HSPs)
chr3 (278-329)||(2696733-2696784)
chr3 (278-329)||(4142135-4142186)
chr3 (278-329)||(4157945-4157996)
chr3 (277-329)||(3754598-3754650)
chr3 (279-342)||(7324419-7324482)
chr3 (279-329)||(1437996-1438045)
chr3 (279-329)||(2456249-2456299)
chr3 (279-328)||(13498224-13498273)
chr3 (281-329)||(23197014-23197062)
chr3 (278-329)||(1891065-1891116)
chr3 (278-329)||(7432055-7432106)
chr3 (277-328)||(9608346-9608397)
chr3 (279-329)||(771500-771550)
chr3 (279-329)||(2442039-2442089)
chr3 (279-329)||(7334240-7334290)
chr3 (279-329)||(7942485-7942535)
chr3 (280-329)||(2631358-2631407)
chr3 (281-321)||(2459277-2459317)
chr3 (281-329)||(23230983-23231031)
[»] chr2 (4 HSPs)
chr2 (279-329)||(36577366-36577416)
chr2 (282-329)||(7168691-7168738)
chr2 (279-329)||(7160755-7160805)
chr2 (132-176)||(33038010-33038054)
[»] chr6 (4 HSPs)
chr6 (280-329)||(24417487-24417536)
chr6 (283-328)||(9819831-9819876)
chr6 (138-178)||(4183153-4183193)
chr6 (138-178)||(4743997-4744037)
[»] scaffold0044 (1 HSPs)
scaffold0044 (277-329)||(89141-89193)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 24233724 - 24233404
Alignment:
Q  19 gtaccgactcttggagaaggattaaggacttcccttttatgtttcgttttggtcgacatggagtagttgtgtgtggcacggtgaattggtcgacttatta 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  24233724 gtaccgactcttggagaaggattaaggacttcccttctatgtttcgttttggtcgacatggagtagttgtgtgtggcacagtgaattggttgacttatta 24233625  T
Q  119 taactcaagtgacttgtgtgtcattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcctgattctggagatannnnnnngtcgact 218  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  24233624 taactcaagtgacttgggtgtcattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcctgattctggagatttttttttgtcgact 24233525  T
Q  219 ttggatatgatgagggagtgcttgtgcatattttctcgaaaaagaaccgattcttttattgatgtttggcttatgaaggaatacggaaataaagaatctt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      ||||||||||||||||||||||    
T  24233524 ttggatatgatgagggagtgcttgtgcatattttctcgaaaaagaaccgattcttttactgatgtttggctt------gaatacggaaataaagaatctt 24233431  T
Q  319 ggattaaattgattagtcttcctatct 345  Q
    |||||||||||||||||||||||||||    
T  24233430 ggattaaattgattagtcttcctatct 24233404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 91 - 338
Target Start/End: Complemental strand, 45693129 - 45692879
Alignment:
Q  91 gtggcacggtgaattggtcgacttattataactcaagtgacttgtgtgtcattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcc 190  Q
    ||||||| || ||||||| ||| |||||  | |||| |||||||| |  |||||||||||||||||||||||||||||||||||||||||||||  | ||    
T  45693129 gtggcacagttaattggttgacatattacgattcaaatgacttgtctaccattgtttctcttcatttggggaaggaatcttatcaagaaataccgttgcc 45693030  T
Q  191 tgattctggagatannnnnnngtcgactttggatatgatgagggagtgcttgtgcatattttctcgaaaaagaaccgattcttttattgatgtttggctt 290  Q
    ||||| |||| ||        || ||| |||| | | |||||||| |||||||||||||||||| |||||||  |  |||||| | ||||||||||||||    
T  45693029 tgattatggaaattttgatatgttgaccttgggtgtaatgagggaatgcttgtgcatattttctagaaaaagttctcattcttctcttgatgtttggctt 45692930  T
Q  291 atgaaggaatacggaaata---aagaatcttggattaaattgattagtctt 338  Q
    ||||||||||||||| |||   | || ||||| |||||||||||| |||||    
T  45692929 atgaaggaatacggatataaggaggagtcttgtattaaattgatttgtctt 45692879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 25478862 - 25478917
Alignment:
Q  276 attgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgat 331  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25478862 attgatgtttggcttatgaaggaatacggtaataaagaatcttggattaaattgat 25478917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 24242917 - 24242846
Alignment:
Q  270 tcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcct 341  Q
    ||||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||| ||| ||||||||    
T  24242917 tcttttactgatgtttggcttatgaagatatacggaaataaagagtcttggattaaattaattcgtcttcct 24242846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 23896197 - 23896139
Alignment:
Q  270 tcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 328  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||    
T  23896197 tcttttattgatgtttggcttatgaaggaatatggaaataaagagtcttgggttaaatt 23896139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 24246555 - 24246482
Alignment:
Q  272 ttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcctatct 345  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||  | ||||||||||    
T  24246555 ttttactgatgtttggcttatgaaagaatacggaaataaagagtcttggatgaaattgatccgccttcctatct 24246482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 24629262 - 24629213
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 328  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 25611018 - 25610955
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcct 341  Q
    |||||||||||| |||| ||||||||||||||||||||||||| |||||||||||  |||||||    
T  25611018 tgatgtttggctaatgacggaatacggaaataaagaatcttgggttaaattgattcatcttcct 25610955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 24626832 - 24626770
Alignment:
Q  270 tcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgatt 332  Q
    |||||||| |||||||||||||||||||||||| ||| |||||| |||||| |||||||||||    
T  24626832 tcttttatcgatgtttggcttatgaaggaatacagaattaaagagtcttgggttaaattgatt 24626770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 24634857 - 24634804
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgat 331  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||| |||||||    
T  24634857 tgatgtttggcttatgaaggaatacggaattaaagagtcttagattgaattgat 24634804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 24513055 - 24513108
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgat 331  Q
    |||||||||||||||||| ||||| |||| |||||| || ||||||||||||||    
T  24513055 tgatgtttggcttatgaaagaatatggaagtaaagagtcatggattaaattgat 24513108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 25478732 - 25478770
Alignment:
Q  140 cattgtttctcttcatttggggaaggaatcttatcaaga 178  Q
    |||||||||||||||||||||||| || |||||||||||    
T  25478732 cattgtttctcttcatttggggaaagagtcttatcaaga 25478770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 25611159 - 25611109
Alignment:
Q  131 cttgtgtgtcattgtttctcttcatttggggaaggaatcttatcaagaaat 181  Q
    ||||| || |||||||||||||||||| ||||| ||||||||| |||||||    
T  25611159 cttgtatgccattgtttctcttcatttagggaaagaatcttatgaagaaat 25611109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 51782798 - 51782848
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 328  Q
    |||||||||| ||||||||||||| |||||| || ||||||||| ||||||    
T  51782798 tgatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 24805129 - 24805076
Alignment:
Q  273 tttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaa 326  Q
    |||| ||||||||||||| | ||||||| ||||||| |||| ||||||||||||    
T  24805129 tttaatgatgtttggcttttcaaggaatgcggaaatgaagactcttggattaaa 24805076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 24222053 - 24221985
Alignment:
Q  273 tttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcct 341  Q
    |||| ||||||||||||| ||| ||| |||| |||| ||||||||||| |||| |||||  ||||||||    
T  24222053 tttaatgatgtttggcttttgatggattacgaaaatcaagaatcttgggttaagttgatccgtcttcct 24221985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 25 - 341
Target Start/End: Complemental strand, 40689 - 40370
Alignment:
Q  25 actcttggagaaggattaaggacttcccttttatgtttcgttttggtcgacatggagtagttgtgtgtggcacggtgaattggtcgacttattataactc 124  Q
    ||||||||||||||||| | |||||||||| || |||||||| || ||||||||||||| ||||| ||||||| || ||||||| ||| |||| ||| ||    
T  40689 actcttggagaaggattgaagacttcccttctaagtttcgttgtgatcgacatggagtatttgtgagtggcacagttaattggtagacatattgtaattc 40590  T
Q  125 aa---gtgacttgtgtgtcattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcctgattctggagatannnnnnngtcgactttg 221  Q
    ||   ||||||| ||||||||||||||||| |||||| | |||||||||||  | |||||||    ||| ||||||||| |||        || ||||||    
T  40589 aactcgtgacttatgtgtcattgtttctctacatttgcgaaaggaatcttacgaggaaatactgcatccagattctggaaatattaatatctcaactttg 40490  T
Q  222 gatatgatgagggagtgcttgtgcatattttctcgaaaaagaaccgattcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttgga 321  Q
    |||||  ||||||| ||||||||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||| | ||||||||| |||||||    
T  40489 gatatcttgagggattgcttgtgcatattttctcaaaaaagaaacgactcttttactgatgtttggcttatgaaggaatatgaaaataaagactcttgga 40390  T
Q  322 ttaaattgattagtcttcct 341  Q
    ||||||||||| ||||||||    
T  40389 ttaaattgattcgtcttcct 40370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 32413 - 32318
Alignment:
Q  246 atattttctcgaaaaagaaccgattcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcct 341  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||    
T  32413 atattttctcaaaaaagaaacgactcttttattgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgattcgtcttcct 32318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 140 - 341
Target Start/End: Complemental strand, 1421359 - 1421158
Alignment:
Q  140 cattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcctgattctggagatannnnnnngtcgactttggatatgatgagggagtgc 239  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    ||| ||| |||| ||        ||  || |||| | |||||||||| |||    
T  1421359 cattgtttctcttcatttggggaaggaatcttatcaagagataccgcaacctcattatggaaatctgaataagttaaccttgggtgtgatgagggattgc 1421260  T
Q  240 ttgtgcatattttctcgaaaaagaaccgattcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttc 339  Q
    |||||||| ||||||||| ||||   | | |||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||    
T  1421259 ttgtgcattttttctcgagaaagtcaccactcttctactgatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattgattcatcttc 1421160  T
Q  340 ct 341  Q
    ||    
T  1421159 ct 1421158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 1421483 - 1421391
Alignment:
Q  25 actcttggagaaggattaaggacttcccttttatgtttcgttttggtcgacatggagtagttgtgtgtggcacggtgaattggtcgacttatt 117  Q
    |||||||||||||||||||||||||||||| ||   ||||||| |  ||||||||| || | ||  |||||||||| ||||||| ||| ||||    
T  1421483 actcttggagaaggattaaggacttcccttctaatgttcgtttggaacgacatggaatattcgtaagtggcacggttaattggttgacatatt 1421391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 11032901 - 11032962
Alignment:
Q  270 tcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgat 331  Q
    |||||||  ||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  11032901 tcttttaccgatgtttggctcatgaaggaatacggaaataaagagtcttggattaaattgat 11032962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 3181703 - 3181769
Alignment:
Q  265 ccgattcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgat 331  Q
    |||| ||||||  |||||||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  3181703 ccgactcttttgatgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattgat 3181769  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 11081812 - 11081863
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||||| |||||||||| || ||||||||||| ||||||| |||||||    
T  11081812 tgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattg 11081863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 23766914 - 23766863
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||||| ||||||| ||||| ||||||||||| ||||||| |||||||    
T  23766914 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23766863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 23816762 - 23816711
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||||| ||||||| ||||| ||||||||||| ||||||| |||||||    
T  23816762 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23816711  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 328  Q
    ||||||||| ||||||||||||| |||| |||||| ||||||| ||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 2696784 - 2696733
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  2696784 tgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 2696733  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 4142186 - 4142135
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  4142186 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4142135  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 4157996 - 4157945
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  4157996 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4157945  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 3754598 - 3754650
Alignment:
Q  277 ttgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||    
T  3754598 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattg 3754650  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 7324482 - 7324419
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttccta 342  Q
    ||||||||| |||||||||| |||||||||||||| ||||||| |||||||  |||| ||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattgtatagtgttccta 7324419  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 1437996 - 1438045
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  1437996 gatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattg 1438045  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 2456249 - 2456299
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||| |||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattg 2456299  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 328  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||| ||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 23197014 - 23197062
Alignment:
Q  281 tgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||| ||||||||||| |||||| |||||||||||| |||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattg 23197062  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 1891116 - 1891065
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||||| ||||||||||| | ||||||||||| ||||||| |||||||    
T  1891116 tgatgtttggattatgaaggaacatggaaataaagactcttggactaaattg 1891065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 7432106 - 7432055
Alignment:
Q  278 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||||  |||||||||||| |||||||||||||| |||| |||||||    
T  7432106 tgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattg 7432055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 9608397 - 9608346
Alignment:
Q  277 ttgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 328  Q
    ||||||||||| ||||||||||||| ||||||| ||| ||||||| ||||||    
T  9608397 ttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 771550 - 771500
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||| ||||||||||||| ||||||| ||| ||||||| |||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaattg 771500  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 2442039 - 2442089
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| |||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattg 2442089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 7334290 - 7334240
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||| | |||||||| |||||||||||||| ||||||| |||||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattg 7334240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 7942485 - 7942535
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||| |||||||||| || || |||||||| |||||||||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattg 7942535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 2631358 - 2631407
Alignment:
Q  280 atgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||| ||||||||||||| |||||| |||| ||||||| |||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattg 2631407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 2459277 - 2459317
Alignment:
Q  281 tgtttggcttatgaaggaatacggaaataaagaatcttgga 321  Q
    ||||||| ||||||||||||| ||||||||||| |||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttgga 2459317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 23231031 - 23230983
Alignment:
Q  281 tgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||| ||||| ||||| |||||| |||| |||||||||||||||    
T  23231031 tgtttggctaatgaaagaatatggaaatgaagagtcttggattaaattg 23230983  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 36577366 - 36577416
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 36577416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 7168738 - 7168691
Alignment:
Q  282 gtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||||||||||||||| |||||||| || ||||||| |||||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattg 7168691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 7160805 - 7160755
Alignment:
Q  279 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||||||||||||||| || |||||||| || ||||||| |||||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 7160755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 33038010 - 33038054
Alignment:
Q  132 ttgtgtgtcattgtttctcttcatttggggaaggaatcttatcaa 176  Q
    ||||| ||||||||||||||| |||||| ||||||||| ||||||    
T  33038010 ttgtgcgtcattgtttctcttgatttggagaaggaatcgtatcaa 33038054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 24417536 - 24417487
Alignment:
Q  280 atgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    |||||||| ||||||| ||||| ||||||||||||||||||| |||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattg 24417487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  283 tttggcttatgaaggaatacggaaataaagaatcttggattaaatt 328  Q
    ||||||||||||||||||| ||||||| ||| ||||||| ||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 4183193 - 4183153
Alignment:
Q  138 gtcattgtttctcttcatttggggaaggaatcttatcaaga 178  Q
    |||||||||||||||||||||  |||||| |||||||||||    
T  4183193 gtcattgtttctcttcatttgcagaaggagtcttatcaaga 4183153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 4744037 - 4743997
Alignment:
Q  138 gtcattgtttctcttcatttggggaaggaatcttatcaaga 178  Q
    |||||||||||||||||||||  |||||| |||||||||||    
T  4744037 gtcattgtttctcttcatttgcagaaggagtcttatcaaga 4743997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 89141 - 89193
Alignment:
Q  277 ttgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 329  Q
    ||||| ||||| ||||||||||||| ||||||||||| ||||||| |||||||    
T  89141 ttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattg 89193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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