View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19763_low_13 (Length: 303)

Name: NF19763_low_13
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19763_low_13
NF19763_low_13
[»] chr2 (4 HSPs)
chr2 (4-287)||(40018103-40018386)
chr2 (4-119)||(13710195-13710309)
chr2 (12-119)||(31528522-31528629)
chr2 (4-115)||(31626675-31626784)
[»] chr7 (8 HSPs)
chr7 (4-125)||(11279616-11279736)
chr7 (16-125)||(294997-295106)
chr7 (4-126)||(36222308-36222429)
chr7 (12-119)||(23759615-23759721)
chr7 (4-117)||(46846320-46846432)
chr7 (4-119)||(33313120-33313233)
chr7 (129-287)||(22796474-22796642)
chr7 (15-119)||(3861913-3862016)
[»] chr5 (7 HSPs)
chr5 (12-117)||(33575221-33575326)
chr5 (12-119)||(15532206-15532313)
chr5 (12-119)||(15542388-15542495)
chr5 (21-119)||(26711470-26711567)
chr5 (21-119)||(26981207-26981304)
chr5 (14-119)||(22159881-22159986)
chr5 (71-119)||(11988868-11988916)
[»] chr3 (5 HSPs)
chr3 (12-119)||(11138576-11138683)
chr3 (12-119)||(22626318-22626425)
chr3 (4-119)||(39563516-39563630)
chr3 (16-57)||(20536404-20536445)
chr3 (15-55)||(35366510-35366549)
[»] chr6 (4 HSPs)
chr6 (12-119)||(13017195-13017302)
chr6 (128-287)||(15870354-15870523)
chr6 (12-117)||(22221854-22221959)
chr6 (12-117)||(22247689-22247794)
[»] chr4 (2 HSPs)
chr4 (12-119)||(12172104-12172212)
chr4 (15-119)||(2542018-2542122)
[»] scaffold0440 (1 HSPs)
scaffold0440 (12-117)||(9995-10101)
[»] chr8 (1 HSPs)
chr8 (15-125)||(12575300-12575410)
[»] scaffold0264 (1 HSPs)
scaffold0264 (12-117)||(24193-24298)
[»] chr1 (1 HSPs)
chr1 (15-119)||(1936764-1936868)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 287
Target Start/End: Original strand, 40018103 - 40018386
Alignment:
Q  4 atataatttttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttgg 103  Q
    |||||| ||||||||||||||||||||||  ||||||| ||||  |||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  40018103 atataaattttatacatcctttttaataaaaaaattgccaagtcgaagttaaatgcactccttgtgaaaacaaattttttattacttcgattgaatttgg 40018202  T
Q  104 ttcacttgccaaatattcatcactctttgccattgagtagttcttccttgtttgttggaactccacgtacgatagaggagcggtacctgcattacaaaac 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40018203 ttcacttgccaaatattcatcactctttaccattgagtagttcttccttgtttgttggaactccacgtacgatagaggagcggtacctgcattacaaaac 40018302  T
Q  204 atcaaatcaaggttgaagaatgactgatacagtacagaaagaaacatattgttgcatagcttggtgcggagagatttgtcaaag 287  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40018303 atcaattcaaggttgaagaatgactgatacagtacagaaacaaacatattgttgcatagcttggtgcggagagatttgtcaaag 40018386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 13710195 - 13710309
Alignment:
Q  4 atataatttttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttgg 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || | || || |||||||| ||||||||||||| |||||||||||    
T  13710195 atataaattttatacatcctttttaataatgaaattgctaagtagaagttaaatacagttctcgtaaaaacgaa-tttttattacttcgattgaatttgg 13710293  T
Q  104 ttcacttgccaaatat 119  Q
    ||||||||||||||||    
T  13710294 ttcacttgccaaatat 13710309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 31528522 - 31528629
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||| |||| |||||||||||||||| || ||||||||||||||||    
T  31528522 tttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttg 31528621  T
Q  112 ccaaatat 119  Q
    ||||||||    
T  31528622 ccaaatat 31528629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 31626675 - 31626784
Alignment:
Q  4 atataatttttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttgg 103  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| ||||||| | || ||||  |  ||||||||||| ||||||||| |||||||||||    
T  31626675 atataaattttacacatcctttttaataatgaaattgctaagtagaagttaa-tacagtcctcattgaaacgaatttt-tattacttcgattgaatttgg 31626772  T
Q  104 ttcacttgccaa 115  Q
    ||||||| ||||    
T  31626773 ttcacttaccaa 31626784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 11279616 - 11279736
Alignment:
Q  4 atataatttttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttgg 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||| || ||||||  | |||||||| |||| || ||||||||||||| |||||||||||    
T  11279616 atataaattttatacatcctttttaataatgaaattgctaagtagaaattaaatatagtccttgtggaaac-aaatttttattacttcgattgaatttgg 11279714  T
Q  104 ttcacttgccaaatattcatca 125  Q
    ||||||||||||||||||||||    
T  11279715 ttcacttgccaaatattcatca 11279736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 294997 - 295106
Alignment:
Q  16 tacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaa 115  Q
    |||||||||||||||||||||||||||||||| ||||||||| || |||| ||| | || |||||||||||||||| |||||||||||||||||||||||    
T  294997 tacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggacacaaattttttattacttcgattgaatttggttcacttgccaa 295096  T
Q  116 atattcatca 125  Q
    |||| |||||    
T  295097 atatccatca 295106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 36222429 - 36222308
Alignment:
Q  4 atataatttttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttgg 103  Q
    |||||| ||||||||||||||||||||||||||||||||| ||| || |||||| || |||| |||  ||||||| ||||||||||||||||||||||||    
T  36222429 atataaattttatacatcctttttaataatgaaattgctacgtagaaattaaatacaatcctcgtggtaacgaat-ttttattacttcaattgaatttgg 36222331  T
Q  104 ttcacttgccaaatattcatcac 126  Q
    |||| ||||||||||| ||||||    
T  36222330 ttcatttgccaaatatccatcac 36222308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 23759721 - 23759615
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||| || |||| ||  ||||||| ||||||||||||| |||||||||||||||||||    
T  23759721 tttatacatcctttttaa-aatgaatttgctaagtagaagttaaatacagtcctcgtagaaacgaactttttattacttcgattgaatttggttcacttg 23759623  T
Q  112 ccaaatat 119  Q
    ||||||||    
T  23759622 ccaaatat 23759615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 46846432 - 46846320
Alignment:
Q  4 atataatttttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttgg 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||| || |||||| || |||| ||| |||| |  ||||||||||||| ||||||| ||     
T  46846432 atataaattttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-atatttttattacttcgattgaatctga 46846334  T
Q  104 ttcacttgccaaat 117  Q
    ||||||||||||||    
T  46846333 ttcacttgccaaat 46846320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 33313120 - 33313233
Alignment:
Q  4 atataatttttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttgg 103  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| ||||| ||| || |||| ||  ||||||| ||||||||||||| ||||||||||     
T  33313120 atataaattttacacatcctttttaataatgaaattgctaagtagaagtt-aatacagtcctcgtagaaacgaa-tttttattacttcgattgaatttgt 33313217  T
Q  104 ttcacttgccaaatat 119  Q
    |||||||  |||||||    
T  33313218 ttcacttctcaaatat 33313233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 287
Target Start/End: Complemental strand, 22796642 - 22796474
Alignment:
Q  129 tttgccattgagtagttcttccttgtttgttggaactccacgtacgatagaggagcggtacctgca-------ttacaaaacatcaaatcaaggttgaag 221  Q
    ||||||||||||||||||| ||| ||||||||||||||| | ||||| |||| ||| || ||| ||       ||||||||||||||  || |||  |||    
T  22796642 tttgccattgagtagttctgcctagtttgttggaactccgcatacgaaagagcagcagtgcctacattacaatttacaaaacatcaatccacggtcaaag 22796543  T
Q  222 aatgactgatacagt---acagaaagaaacatattgttgcatagcttggtgcggagagatttgtcaaag 287  Q
    |||||||||||||||   |||||||||||  ||   | |||||||||||||||||||| ||||||||||    
T  22796542 aatgactgatacagtaccacagaaagaaagttaccatcgcatagcttggtgcggagagctttgtcaaag 22796474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 3862016 - 3861913
Alignment:
Q  15 atacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgcca 114  Q
    |||||||||||| |||||||||||||||||||| |||||||   || |||| ||| | || |||| ||||||||||| ||||| | | || |||||||||    
T  3862016 atacatcctttt-aataatgaaattgctaagtagaagttaataacaatcctcgtggatacaaattatttattacttcgattgactctagtacacttgcca 3861918  T
Q  115 aatat 119  Q
    |||||    
T  3861917 aatat 3861913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 33575221 - 33575326
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    |||||||||||||||||||||| |||||||||| || ||||||||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  33575221 tttatacatcctttttaataataaaattgctaaatagaagttaaatacagtcctcgtgaaaacgaattttttattacttcgattgaatttggttcacttg 33575320  T
Q  112 ccaaat 117  Q
    ||||||    
T  33575321 ccaaat 33575326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 15532313 - 15532206
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||| ||||||||||||||||||||| || ||||||||||||| ||    
T  15532313 tttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaattttttattacttcgatcgaatttggttcacatg 15532214  T
Q  112 ccaaatat 119  Q
    ||||||||    
T  15532213 ccaaatat 15532206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 15542495 - 15542388
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||| || |||| ||| ||||||||||||||||||||| || ||||||||||||||||    
T  15542495 tttatacatcctttttaataatgaaattgttaagtagaagttaaatacagtcctcgtggaaacgaattttttattacttcgatcgaatttggttcacttg 15542396  T
Q  112 ccaaatat 119  Q
    ||||||||    
T  15542395 ccaaatat 15542388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 26711567 - 26711470
Alignment:
Q  21 cctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 119  Q
    ||||||| ||||||||||||||||||| ||||||| | || |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26711567 cctttttgataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 26711470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 26981304 - 26981207
Alignment:
Q  21 cctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 119  Q
    ||||||| ||||||||||||||||||| ||||||| | || |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26981304 cctttttgataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 26981207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 22159881 - 22159986
Alignment:
Q  14 tatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgcc 113  Q
    |||||||||||||| | || |||||||||||||| ||||||||| || |||| ||| |||| |||||||||||||||| || ||||||||| |||||| |    
T  22159881 tatacatcctttttgacaaagaaattgctaagtagaagttaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggtacacttgtc 22159980  T
Q  114 aaatat 119  Q
    ||||||    
T  22159981 aaatat 22159986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 11988916 - 11988868
Alignment:
Q  71 aaacgaattttttattacttcaattgaatttggttcacttgccaaatat 119  Q
    ||||||||| ||||||||||| |||||||||| |||||||| |||||||    
T  11988916 aaacgaattatttattacttcgattgaatttgattcacttgtcaaatat 11988868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 11138683 - 11138576
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||| ||||||| ||||||||||||| || ||||||||||||||||    
T  11138683 tttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaactttttattacttcgatcgaatttggttcacttg 11138584  T
Q  112 ccaaatat 119  Q
    ||||||||    
T  11138583 ccaaatat 11138576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 22626425 - 22626318
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||| ||||||| ||||||||||||| || ||||||||||||||||    
T  22626425 tttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaactttttattacttcgatcgaatttggttcacttg 22626326  T
Q  112 ccaaatat 119  Q
    ||||||||    
T  22626325 ccaaatat 22626318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 39563630 - 39563516
Alignment:
Q  4 atataatttttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttgg 103  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||| ||||||| | || |||| ||| ||||||||||||||||||||  |||||||||||    
T  39563630 atataaattttacacatccttttttataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttttattactttgattgaatttgg 39563532  T
Q  104 ttcacttgccaaatat 119  Q
    ||||||||||||||||    
T  39563531 ttcacttgccaaatat 39563516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 20536445 - 20536404
Alignment:
Q  16 tacatcctttttaataatgaaattgctaagtaaaagttaaat 57  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  20536445 tacatcctttttaataatgaaatttctaagtagaagttaaat 20536404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 35366510 - 35366549
Alignment:
Q  15 atacatcctttttaataatgaaattgctaagtaaaagttaa 55  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  35366510 atacatccttttta-taatgaaattgctaagtagaagttaa 35366549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 13017302 - 13017195
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  | |||| ||| ||||||| ||||||||||||| || ||||||||||||||||    
T  13017302 tttatacatcctttttaataatgaaattgctaagtagaagttaaatatagtcctcgtggaaacgaactttttattacttcgatcgaatttggttcacttg 13017203  T
Q  112 ccaaatat 119  Q
    ||||||||    
T  13017202 ccaaatat 13017195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 287
Target Start/End: Original strand, 15870354 - 15870523
Alignment:
Q  128 ctttgccattgagtagttcttccttgtttgttggaactccacgtacgatagaggagcggtacctgcattacaa-------aacatcaaatcaaggttgaa 220  Q
    |||||||||||||||||||| ||| ||||||||||||||| | |||||||||| ||| || ||| ||||||||       ||||||||  || | | |||    
T  15870354 ctttgccattgagtagttctgcctagtttgttggaactccgcatacgatagagcagcagtgcctacattacaatttacagaacatcaatccacgatcgaa 15870453  T
Q  221 gaatgactgatacagt---acagaaagaaacatattgttgcatagcttggtgcggagagatttgtcaaag 287  Q
    |||||||||||| |||   |||||||||||  ||   | |||||||||||||||||||||||||| ||||    
T  15870454 gaatgactgatagagtaccacagaaagaaagttaccatagcatagcttggtgcggagagatttgttaaag 15870523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 22221854 - 22221959
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||||  | |||| ||| |||||||||| ||| |||||| || |  |||||| ||||||    
T  22221854 tttatacatcctttttaataatgaaattgcttagtagaagctaaatatagtcctcgtggaaacgaatttattactacttcgatagcttttggtacacttg 22221953  T
Q  112 ccaaat 117  Q
    ||||||    
T  22221954 ccaaat 22221959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 22247689 - 22247794
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||||  | |||| ||| |||||||||| ||| |||||| || |  |||||| ||||||    
T  22247689 tttatacatcctttttaataatgaaattgcttagtagaagctaaatatagtcctcgtggaaacgaatttattactacttcgatagcttttggtacacttg 22247788  T
Q  112 ccaaat 117  Q
    ||||||    
T  22247789 ccaaat 22247794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 12172104 - 12172212
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacga-attttttattacttcaattgaatttggttcactt 110  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||| ||||||  |||||||||||||| || |||||||||||||||    
T  12172104 tttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgatcttttttattacttcgatcgaatttggttcactt 12172203  T
Q  111 gccaaatat 119  Q
    |||||||||    
T  12172204 gccaaatat 12172212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 2542018 - 2542122
Alignment:
Q  15 atacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgcca 114  Q
    |||||||||||||||||||||||||||| |||| ||||||||| || |||| ||| | ||||||| ||||||||||| ||||| |||||| |||||||||    
T  2542018 atacatcctttttaataatgaaattgctcagtagaagttaaatacagtcctcgtggatacgaattatttattacttcgattgactttggtacacttgcca 2542117  T
Q  115 aatat 119  Q
    |||||    
T  2542118 aatat 2542122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 9995 - 10101
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaatt-ttttattacttcaattgaatttggttcactt 110  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || ||| || | ||||||||| |||||||||||| || ||||||| |||||||    
T  9995 tttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtccctgaggaaacgaattcttttattacttcgatcgaatttgattcactt 10094  T
Q  111 gccaaat 117  Q
    |||||||    
T  10095 gccaaat 10101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 12575410 - 12575300
Alignment:
Q  15 atacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgcca 114  Q
    |||||||||||||||||||||| ||| | |||| |||||||   || |||| ||| | ||||||| ||||||||||| |||||||||||| |||||||||    
T  12575410 atacatcctttttaataatgaacttgttgagtagaagttaacaacagtcctcgtggatacgaattatttattacttcgattgaatttggtacacttgcca 12575311  T
Q  115 aatattcatca 125  Q
    |||||| ||||    
T  12575310 aatatttatca 12575300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 24298 - 24193
Alignment:
Q  12 tttatacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttg 111  Q
    ||||||||||||||||||||||||||||| | |||| ||||||||| || |||| ||| |||| ||||| ||| |||||| || |  |||||| ||||||    
T  24298 tttatacatcctttttaataatgaaattgttgagtagaagttaaatacagtcctcgtggaaacaaatttattactacttcgatagcttttggtacacttg 24199  T
Q  112 ccaaat 117  Q
    ||||||    
T  24198 ccaaat 24193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 1936764 - 1936868
Alignment:
Q  15 atacatcctttttaataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgcca 114  Q
    ||||||| || ||| |||||||||||| ||||| |||||||      || ||||| ||| ||||| || |||||||| ||||||||||||||||||||||    
T  1936764 atacatcgttattactaatgaaattgccaagtagaagttaacaatggtcattgtggaaatgaattattcattacttcgattgaatttggttcacttgcca 1936863  T
Q  115 aatat 119  Q
    |||||    
T  1936864 aatat 1936868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University