View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19763_low_15 (Length: 282)

Name: NF19763_low_15
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19763_low_15
NF19763_low_15
[»] chr4 (16 HSPs)
chr4 (7-271)||(25180878-25181142)
chr4 (63-271)||(25169146-25169354)
chr4 (63-271)||(25251900-25252108)
chr4 (55-139)||(25160726-25160810)
chr4 (206-266)||(24999199-24999259)
chr4 (54-139)||(25000218-25000303)
chr4 (206-266)||(7727743-7727803)
chr4 (55-139)||(24986838-24986922)
chr4 (218-266)||(25041616-25041664)
chr4 (55-139)||(25047254-25047338)
chr4 (207-266)||(24987851-24987910)
chr4 (198-263)||(25161083-25161148)
chr4 (199-266)||(25048490-25048557)
chr4 (78-139)||(4600902-4600963)
chr4 (207-264)||(25193119-25193176)
chr4 (59-139)||(25189915-25189995)
[»] chr5 (1 HSPs)
chr5 (56-139)||(30360258-30360341)
[»] chr2 (3 HSPs)
chr2 (60-139)||(42289974-42290053)
chr2 (60-139)||(42157372-42157451)
chr2 (60-139)||(42167879-42167958)
[»] chr3 (3 HSPs)
chr3 (56-139)||(9213039-9213122)
chr3 (199-264)||(9212605-9212670)
chr3 (206-266)||(8089432-8089492)
[»] chr6 (6 HSPs)
chr6 (58-139)||(29405630-29405711)
chr6 (206-266)||(29421030-29421090)
chr6 (206-245)||(29462162-29462201)
chr6 (57-139)||(29422194-29422276)
chr6 (57-139)||(29461205-29461287)
chr6 (206-266)||(29405162-29405222)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 25180878 - 25181142
Alignment:
Q  7 gtgagaagaaactaagtttaattgagaatagtctattggtataaaattgacttacttgggagtattctagaccaagatatggaaaatctgtatgcatcca 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25180878 gtgaaaagaaactaagtttaattgagaatagtctattggtataaaattgacttacttgggagtattctagaccaagatatggaaaatctgtatgcatcca 25180977  T
Q  107 agttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaaccgcaacgtctccattgtttccatcagtgattttttgaggatatct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25180978 agttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaaccgcaacgtctccattgtttccatcagtgattttttgaggatatct 25181077  T
Q  207 atgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcatattgat 271  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25181078 atgagtgaaagtatcccatatacttgctcctcttccaccttcacttgctgcaccttcatattgat 25181142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 63 - 271
Target Start/End: Original strand, 25169146 - 25169354
Alignment:
Q  63 tgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaacc 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25169146 tgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaacc 25169245  T
Q  163 gcaacgtctccattgtttccatcagtgattttttgaggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcacctt 262  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25169246 gcaacgtctccattgtttccatcactgattttttgaggatatctatgagtgaatgtatcccaaatacttggtcctcttccaccttcacttgctgcacctt 25169345  T
Q  263 catattgat 271  Q
    |||||||||    
T  25169346 catattgat 25169354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 63 - 271
Target Start/End: Complemental strand, 25252108 - 25251900
Alignment:
Q  63 tgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaacc 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25252108 tgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaacc 25252009  T
Q  163 gcaacgtctccattgtttccatcagtgattttttgaggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcacctt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  25252008 gcaacgtctccattgtttccatcagtgattttttgaggatatctatgagtgaaagtatcccatatacttgctcctcttccaccttcacttgctgcacctt 25251909  T
Q  263 catattgat 271  Q
    |||||||||    
T  25251908 catattgat 25251900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 25160726 - 25160810
Alignment:
Q  55 gacttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    ||||||||||| | |||||||||||| |||||||| |||||||||| ||| ||||||||||| ||||||||   |||||||||||    
T  25160726 gacttacttggcaatattctagaccaggatatggagaatctgtatgaatctaagttcatatctttcatgatcttaacatcttcct 25160810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 24999259 - 24999199
Alignment:
Q  206 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 266  Q
    ||||||| || ||||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  24999259 tatgagtaaaggtatcccatatacttggtccttttccaccttctcttactgcaccttcata 24999199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 25000303 - 25000218
Alignment:
Q  54 tgacttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    |||||||||||| || | |||||||||||| || |||||||| || |||||||  |||| |||||||||||| |||| ||||||||    
T  25000303 tgacttacttggtagcactctagaccaagaaattgaaaatctataagcatccatattcaaatccttcatgattccaatatcttcct 25000218  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 7727803 - 7727743
Alignment:
Q  206 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 266  Q
    |||||||||| ||||||||||||||||| ||| | |||||||||  |||||||||||||||    
T  7727803 tatgagtgaaggtatcccatatacttggccctttgccaccttcatgtgctgcaccttcata 7727743  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 24986838 - 24986922
Alignment:
Q  55 gacttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    ||||||||||| || | |||||||||||  |||||||||||||| |||||||  |||| |||||| ||||| |||| ||||||||    
T  24986838 gacttacttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcct 24986922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 25041616 - 25041664
Alignment:
Q  218 tatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 266  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  25041616 tatcccatatactttgtcctcttccaccttcatttgcagcaccttcata 25041664  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 25047254 - 25047338
Alignment:
Q  55 gacttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    ||||||||||| |  | |||||||||||| ||||| ||||| || |||||||  ||||||| ||||||||| |||||||||||||    
T  25047254 gacttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 25047338  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 24987851 - 24987910
Alignment:
Q  207 atgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 266  Q
    ||||||||| |||||||| |||||||||||| ||||| |||||  |||||||||||||||    
T  24987851 atgagtgaaagtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcata 24987910  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 25161083 - 25161148
Alignment:
Q  198 aggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttc 263  Q
    ||||||||||||||| || || |||||||||||||||  ||| ||||||||  |||||||||||||    
T  25161083 aggatatctatgagtaaaggtgtcccatatacttggtgttctaccaccttctgttgctgcaccttc 25161148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 25048490 - 25048557
Alignment:
Q  199 ggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 266  Q
    |||||| |||||| ||| |||||||| |||||||||||| ||||| |||   ||||||||||||||||    
T  25048490 ggatatttatgagcgaaagtatcccaaatacttggtccttttccatctttttttgctgcaccttcata 25048557  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 4600902 - 4600963
Alignment:
Q  78 ccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    |||||||||||| ||||||||||||||    ||||||| |||||||||  ||||||||||||    
T  4600902 ccaagatatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 4600963  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 25193119 - 25193176
Alignment:
Q  207 atgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttca 264  Q
    ||||||||| || ||||| |||||||||||||| ||||||||  || |||||||||||    
T  25193119 atgagtgaaggtgtcccagatacttggtcctctaccaccttcctttactgcaccttca 25193176  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 25189915 - 25189995
Alignment:
Q  59 tacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    |||||||||||||||| |||||||| || || ||||| || | |||||  |||  ||||||||| || |||||||||||||    
T  25189915 tacttgggagtattcttgaccaagagattgagaatctatacgaatccatattctgatccttcataatcccaacatcttcct 25189995  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 30360341 - 30360258
Alignment:
Q  56 acttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    |||||||||| |||||||||||||| || ||||| ||||| |||||||| || ||||||| ||||||||| |||||||||||||    
T  30360341 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 30360258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 42290053 - 42289974
Alignment:
Q  60 acttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    ||||||||| |||||||||||||| || || |||||||| |||||||| ||||||| ||||||||| |||||||||||||    
T  42290053 acttgggaggattctagaccaagagatcgagaatctgtaggcatccaaattcatattcttcatgatgccaacatcttcct 42289974  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 42157372 - 42157451
Alignment:
Q  60 acttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    ||||||||  |||||||||||||| || || ||||| || |||||||| ||||||| | ||||||| |||||||||||||    
T  42157372 acttgggacgattctagaccaagagattgagaatctataagcatccaaattcatattcctcatgatgccaacatcttcct 42157451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 42167879 - 42167958
Alignment:
Q  60 acttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    ||||||||| ||||  |||||||| || || |||||||| ||||| || ||||||| | ||||||| |||||||||||||    
T  42167879 acttgggaggattcgggaccaagagattgagaatctgtaagcatctaaattcatattcctcatgatgccaacatcttcct 42167958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 9213122 - 9213039
Alignment:
Q  56 acttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    |||||||||| | |||||||||||| |||| ||| |||||||||| |||||||||||| ||||| ||||| | |||||||||||    
T  9213122 acttacttggcaatattctagaccaggataaggagaatctgtatgaatccaagttcatgtccttgatgatcctaacatcttcct 9213039  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 9212670 - 9212605
Alignment:
Q  199 ggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttca 264  Q
    |||||| |||| ||||| ||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  9212670 ggatatttatgggtgaaagtatcccatatacttggtgttctaccaccttcatttgctgcaccttca 9212605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 8089492 - 8089432
Alignment:
Q  206 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 266  Q
    |||||||||| || |||||||| ||||| ||||| |||||||||  ||| |||||||||||    
T  8089492 tatgagtgaaggtgtcccatatgcttggacctctgccaccttcaaatgcagcaccttcata 8089432  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 29405711 - 29405630
Alignment:
Q  58 ttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    |||||||| | |||||| |||||||| || || |||||||| ||||||| |||||| |||||||||||  | ||||||||||    
T  29405711 ttacttggcaatattcttgaccaagagattgagaatctgtaagcatccatgttcatgtccttcatgatctcgacatcttcct 29405630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 29421090 - 29421030
Alignment:
Q  206 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 266  Q
    |||| ||||| ||||||||||||||||||||| |||||||   | ||||||||||||||||    
T  29421090 tatgcgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcata 29421030  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 29462162 - 29462201
Alignment:
Q  206 tatgagtgaatgtatcccatatacttggtcctcttccacc 245  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  29462162 tatgtgtgaaagtatcccatatacttggtcctcttccacc 29462201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 29422276 - 29422194
Alignment:
Q  57 cttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    ||||||||| |||||||| |||||||| ||||||||||| || ||||||| ||| || || |||| ||   ||||||||||||    
T  29422276 cttacttggaagtattctggaccaagagatggaaaatctataagcatccatgttgatgtctttcacgagctcaacatcttcct 29422194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 29461205 - 29461287
Alignment:
Q  57 cttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 139  Q
    ||||||||| ||||| || |||||||| || |||||||| || ||||||| ||| || || ||||||||  ||||||||||||    
T  29461205 cttacttggaagtatcctggaccaagagatagaaaatctataagcatccatgttgatgtctttcatgatctcaacatcttcct 29461287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 29405222 - 29405162
Alignment:
Q  206 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 266  Q
    |||||||| | | ||||||||| ||||||||||| |||||  || ||||||||||||||||    
T  29405222 tatgagtgtaagcatcccatatgcttggtcctctgccaccaacatttgctgcaccttcata 29405162  T

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