View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19763_low_17 (Length: 237)

Name: NF19763_low_17
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19763_low_17
NF19763_low_17
[»] chr5 (3 HSPs)
chr5 (1-223)||(4802207-4802427)
chr5 (20-72)||(33555955-33556007)
chr5 (20-75)||(285559-285614)
[»] chr8 (4 HSPs)
chr8 (1-223)||(19252374-19252588)
chr8 (1-223)||(19325558-19325772)
chr8 (1-223)||(3753556-3753778)
chr8 (155-223)||(45287489-45287557)
[»] chr1 (2 HSPs)
chr1 (1-223)||(47388097-47388319)
chr1 (20-75)||(10692920-10692975)
[»] chr7 (3 HSPs)
chr7 (1-223)||(42922436-42922644)
chr7 (20-75)||(15106209-15106264)
chr7 (20-75)||(23298560-23298615)
[»] chr6 (1 HSPs)
chr6 (1-223)||(34325554-34325775)
[»] chr2 (3 HSPs)
chr2 (119-223)||(30922122-30922226)
chr2 (176-223)||(33652391-33652438)
chr2 (24-75)||(34853647-34853698)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4802207 - 4802427
Alignment:
Q  1 aaaaaaccataaagtattcacttagttttaaatagaatactactcatataatagttacattataataacataccattctatcattaatatatacttttga 100  Q
    |||||||||| ||||||  |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4802207 aaaaaaccatgaagtatcaacttagttttaaatagaatactactcata--atagttacattataataacataccatcctatcattaatatatacttttga 4802304  T
Q  101 tattatattttttcattgacggattgaattacgtatcttgtaaaaaatgtgttctaaaggaaaatattattattccaaaacatggaaaatgtattatatt 200  Q
    |||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  4802305 tattatatttgtccattgacgggttgaattacgtatcttgtaaaaaatttgttctaaaagaaaatattattattccaaaacatggaaaatgtattatact 4802404  T
Q  201 tggtatccttccttagtatgata 223  Q
    ||||||||||||||  |||||||    
T  4802405 tggtatccttccttgatatgata 4802427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 33556007 - 33555955
Alignment:
Q  20 acttagttttaaatagaatactactcatataatagttacattataataacata 72  Q
    |||||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  33556007 acttagttgtaaatagaatactactaatataatagtaacattataataacata 33555955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 285559 - 285614
Alignment:
Q  20 acttagttttaaatagaatactactcatataatagttacattataataacatacca 75  Q
    |||| ||| ||||||||||| |||||||||| |||| |||||||||||||||||||    
T  285559 acttggttgtaaatagaataatactcatatagtagtaacattataataacatacca 285614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19252588 - 19252374
Alignment:
Q  1 aaaaaaccataaagtattcacttagttttaaatagaatactactcatataatagttacattataataacataccattctatcattaatatatacttttga 100  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19252588 aaaaaaccatgaagtatcaacttagttttaaatagaatactactcatataatagttacattataataacataccatcctatcattaatatatacttttga 19252489  T
Q  101 tattatattttttcattgacggattgaattacgtatcttgtaaaaaatgtgttctaaaggaaaatattattattccaaaacatggaaaatgtattatatt 200  Q
    |||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||||||  |    
T  19252488 tattatatttgtccattgacgggttgaattacgtatcttgtaaaaaatttgttctaaaggaaaatattattattcca--------aaaatgtattatgct 19252397  T
Q  201 tggtatccttccttagtatgata 223  Q
    |||||||||||||||||||||||    
T  19252396 tggtatccttccttagtatgata 19252374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19325772 - 19325558
Alignment:
Q  1 aaaaaaccataaagtattcacttagttttaaatagaatactactcatataatagttacattataataacataccattctatcattaatatatacttttga 100  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19325772 aaaaaaccatgaagtatcaacttagttttaaatagaatactactcatataatagttacattataataacataccatcctatcattaatatatacttttga 19325673  T
Q  101 tattatattttttcattgacggattgaattacgtatcttgtaaaaaatgtgttctaaaggaaaatattattattccaaaacatggaaaatgtattatatt 200  Q
    |||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||||||  |    
T  19325672 tattatatttgtccattgacgggttgaattacgtatcttgtaaaaaatttgttctaaaggaaaatattattattcca--------aaaatgtattatgct 19325581  T
Q  201 tggtatccttccttagtatgata 223  Q
    |||||||||||||||||||||||    
T  19325580 tggtatccttccttagtatgata 19325558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3753778 - 3753556
Alignment:
Q  1 aaaaaaccataaagtattcacttagttttaaatagaatactactcatataatagttacattataataacataccattctatcattaatatatacttttga 100  Q
    |||||||| | ||||||  ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  3753778 aaaaaaccgtgaagtatcaacttagttttaaatagaatactattcgtataatagttacattataataacatactataatataattaatatatacttttga 3753679  T
Q  101 tattatattttttcattgacggattgaattacgtatcttgtaaaaaatgtgttctaaaggaaaatattattattccaaaacatggaaaatgtattatatt 200  Q
    |||||||||| | ||||||||| ||||||||| ||| |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  3753678 tattatatttgtccattgacgggttgaattacatattttgttaaaaatttgttctaaatgaaaatattattattccaaaacatggaaaatgtattatact 3753579  T
Q  201 tggtatccttccttagtatgata 223  Q
    |||||||||||||||||||||||    
T  3753578 tggtatccttccttagtatgata 3753556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 45287489 - 45287557
Alignment:
Q  155 taaaggaaaatattattattccaaaacatggaaaatgtattatatttggtatccttccttagtatgata 223  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||    
T  45287489 taaaggaaaatattattattctaaaacatggaaaatgtgttatacttggtatccttccttaatatgata 45287557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47388097 - 47388319
Alignment:
Q  1 aaaaaaccataaagtattcacttagttttaaatagaatactactcatataatagttacattataataacataccattctatcattaatatatacttttga 100  Q
    |||||| |||||| |||  | |||||||||||||||||||||||||||||||||||  ||||||||| |||| ||| |||||||||||||||| ||||||    
T  47388097 aaaaaatcataaaatatcaatttagttttaaatagaatactactcatataatagttttattataatatcatatcatcctatcattaatatatatttttga 47388196  T
Q  101 tattatattttttcattgacggattgaattacgtatcttgtaaaaaatgtgttctaaaggaaaatattattattccaaaacatggaaaatgtattatatt 200  Q
    |||||||||| | |||||||| ||||||||||||||||| |||| ||  ||||||||||||||||||||||||| |||||||||||||||||| |||| |    
T  47388197 tattatatttgtccattgacgaattgaattacgtatcttctaaagaaattgttctaaaggaaaatattattatttcaaaacatggaaaatgtaatatact 47388296  T
Q  201 tggtatccttccttagtatgata 223  Q
    ||||||||||| |||||||||||    
T  47388297 tggtatccttctttagtatgata 47388319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 10692920 - 10692975
Alignment:
Q  20 acttagttttaaatagaatactactcatataatagttacattataataacatacca 75  Q
    |||||||| |||||||||||||| | ||||| |||| |||||||||||||||||||    
T  10692920 acttagttgtaaatagaatactattaatatagtagtaacattataataacatacca 10692975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42922644 - 42922436
Alignment:
Q  1 aaaaaaccataaagtattcacttagttttaaatagaatactactcatataatagttacattataataacataccattctatcattaatatatacttttga 100  Q
    ||||||| || ||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||              |||||    
T  42922644 aaaaaactatgaagtatcaatttagttttaaatagaatactgctcatataatagttacattataataacataccatcctat--------------tttga 42922559  T
Q  101 tattatattttttcattgacggattgaattacgtatcttgtaaaaaatgtgttctaaaggaaaatattattattccaaaacatggaaaatgtattatatt 200  Q
    |||||||||| | ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42922558 tattatatttgtccattgacgggttgaattacgtatattgtaaaaaatttgttctaaaggaaaatattattattccaaaacatggaaaatgtattatact 42922459  T
Q  201 tggtatccttccttagtatgata 223  Q
    |||||||||||||||||||||||    
T  42922458 tggtatccttccttagtatgata 42922436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 15106264 - 15106209
Alignment:
Q  20 acttagttttaaatagaatactactcatataatagttacattataataacatacca 75  Q
    |||||||| |||||||||||||||| ||||| |||| |||||||||||||||||||    
T  15106264 acttagttgtaaatagaatactactaatatagtagtaacattataataacatacca 15106209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 23298560 - 23298615
Alignment:
Q  20 acttagttttaaatagaatactactcatataatagttacattataataacatacca 75  Q
    |||||||| |||||||||||||||| |||||  ||| |||||||||||||||||||    
T  23298560 acttagttgtaaatagaatactactaatatagcagtaacattataataacatacca 23298615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34325775 - 34325554
Alignment:
Q  1 aaaaaaccataaagtattcacttagttttaaatagaatactactcatataatagttacattataataacatac----cattctatcattaatatatac-- 94  Q
    ||||||| || ||||||  |||||||||||||||||||||||        ||||||||||||||||||||||     ||| ||||||||||||||||       
T  34325775 aaaaaactatgaagtatcaacttagttttaaatagaatacta--------atagttacattataataacatatatatcatcctatcattaatatatatat 34325684  T
Q  95 ttttgatattatattttttcattgacggattgaattacgtatcttgtaaaaaatgtg-ttctaaaggaaaatattattattccaaaacatggaaaatgta 193  Q
    |||||||||||||||| | ||||||| | ||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||    
T  34325683 ttttgatattatatttgtccattgacaggttgaattacgtatcttgtaaaaaaaattattctaaaggaaaatattattattccaaaacatggaaaatgta 34325584  T
Q  194 ttatatttggtatccttccttagtatgata 223  Q
    ||||| |||||||| |||||||||||||||    
T  34325583 ttatacttggtatctttccttagtatgata 34325554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 30922122 - 30922226
Alignment:
Q  119 acggattgaattacgtatcttgtaaaaaatgtgttctaaaggaaaatattattattccaaaacatggaaaatgtattatatttggtatccttccttagta 218  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30922122 acgggttgaattacgtatcttgtaaaaaatttgttctaaagaaaaatattattattccaaaacatggaaaatgtattatacttggtatccttccttagta 30922221  T
Q  219 tgata 223  Q
    |||||    
T  30922222 tgata 30922226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 33652391 - 33652438
Alignment:
Q  176 caaaacatggaaaatgtattatatttggtatccttccttagtatgata 223  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33652391 caaaacatggaaaatgtattatacttggtatccttccttagtatgata 33652438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 34853647 - 34853698
Alignment:
Q  24 agttttaaatagaatactactcatataatagttacattataataacatacca 75  Q
    |||| |||||||||||||||| ||||| |||| |||||||||||||||||||    
T  34853647 agttgtaaatagaatactactaatatagtagtaacattataataacatacca 34853698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University