View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19763_low_18 (Length: 227)

Name: NF19763_low_18
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19763_low_18
NF19763_low_18
[»] chr3 (10 HSPs)
chr3 (26-197)||(46553928-46554099)
chr3 (34-192)||(46532134-46532292)
chr3 (122-182)||(46236634-46236694)
chr3 (109-197)||(45883560-45883648)
chr3 (122-194)||(47397148-47397220)
chr3 (110-193)||(46539211-46539294)
chr3 (112-193)||(5160488-5160569)
chr3 (122-197)||(16025694-16025769)
chr3 (196-227)||(46554112-46554143)
chr3 (110-162)||(5156490-5156542)
[»] chr8 (3 HSPs)
chr8 (111-197)||(9675525-9675611)
chr8 (111-197)||(9692547-9692633)
chr8 (111-197)||(21464019-21464105)
[»] chr4 (2 HSPs)
chr4 (113-176)||(35162669-35162732)
chr4 (111-193)||(35155632-35155714)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 46553928 - 46554099
Alignment:
Q  26 ccagtaacagtgactgcggcagcttctgtgcccacttcatttactttaatgatagacttttgagttatattggaaatccataatggagagtctactattt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46553928 ccagtaacagtgactgcggcagcttctgtgcccacttcatttactttaatgatagacttttgagttatattggaaatccataatggagagtctactattt 46554027  T
Q  126 ttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 197  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46554028 ttgttaaacctccattagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaaacccaa 46554099  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 192
Target Start/End: Complemental strand, 46532292 - 46532134
Alignment:
Q  34 agtgactgcggcagcttctgtgcccacttcatttactttaatgatagacttttgagttatattggaaatccataatggagagtctactatttttgttaaa 133  Q
    ||||||||| |||||||| |||||   ||||||||||| ||||| ||| ||||||  ||| || |||| ||| |  ||||||||  | |||||||| |||    
T  46532292 agtgactgcagcagcttcagtgcctttttcatttacttcaatgaaagaattttgaaatatgttagaaacccaaatcggagagtccgccatttttgtcaaa 46532193  T
Q  134 cctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaag 192  Q
    |||||| |||||||||||||||  ||||| ||||||||   || |||||||||||||||    
T  46532192 cctccaccagagaaaggtaaaacaactcctaactcctttgacacattagaaagttcaag 46532134  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 46236634 - 46236694
Alignment:
Q  122 atttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattag 182  Q
    |||||||| ||||||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  46236634 atttttgtaaaacctccagcagagaaaggtaaaatcactcctaactccttcatcgtattag 46236694  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 45883560 - 45883648
Alignment:
Q  109 tggagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 197  Q
    |||| |||| || |||||||| |||| ||||  |||||||||| ||| |||||| |||||||||| ||||||||||  |||||||||||    
T  45883560 tggatagtccaccatttttgtcaaacttccacgagagaaaggtgaaaccactcctaactccttcaacatattagaagtttcaagcccaa 45883648  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 47397148 - 47397220
Alignment:
Q  122 atttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcc 194  Q
    |||||||||||||||||    |||||||||||||||||||| |||||||||| ||||| ||||  ||||||||    
T  47397148 atttttgttaaacctccgagggagaaaggtaaaatcactcctaactccttcaacatatcagaagtttcaagcc 47397220  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 46539294 - 46539211
Alignment:
Q  110 ggagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagc 193  Q
    |||||||| || |||||||| |||||||| | |||||||||||||| || ||| | |||||| ||||||||||||  |||||||    
T  46539294 ggagagtccaccatttttgtcaaacctccttgagagaaaggtaaaaccattcctagctccttaagcatattagaagtttcaagc 46539211  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 5160569 - 5160488
Alignment:
Q  112 agagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagc 193  Q
    |||||| || |||||||| |||||| ||  || |||||||||| ||||||| |||||||||||||||| ||||  |||||||    
T  5160569 agagtccaccatttttgtcaaaccttcacgagtgaaaggtaaagtcactcctaactccttcagcatatcagaagtttcaagc 5160488  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 16025769 - 16025694
Alignment:
Q  122 atttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 197  Q
    |||||||| |||||||||  ||||||||||||||  ||||| | |||||||||||||| ||||  ||||| |||||    
T  16025769 atttttgtcaaacctccaggagagaaaggtaaaactactccaagctccttcagcatatcagaagtttcaaacccaa 16025694  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 227
Target Start/End: Original strand, 46554112 - 46554143
Alignment:
Q  196 aacttggaatcctaaagtcacccacatcaact 227  Q
    ||||||||||||||||||||||||||||||||    
T  46554112 aacttggaatcctaaagtcacccacatcaact 46554143  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 5156542 - 5156490
Alignment:
Q  110 ggagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcc 162  Q
    |||||||| || |||||||| |||||||||  || ||||||||||||||||||    
T  5156542 ggagagtccaccatttttgtcaaacctccacgagtgaaaggtaaaatcactcc 5156490  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 9675525 - 9675611
Alignment:
Q  111 gagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 197  Q
    ||||||| || |||||||| |||||||||  ||||||||||||||||||||| | |||||||| |||   ||||  |||||||||||    
T  9675525 gagagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaa 9675611  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 9692547 - 9692633
Alignment:
Q  111 gagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 197  Q
    ||||||| || |||||||| |||||||||  ||||||||||||| ||||||| |||||||||  ||||  ||||  |||||||||||    
T  9692547 gagagtccaccatttttgtcaaacctccagaagagaaaggtaaactcactcctaactccttcgtcatacgagaagtttcaagcccaa 9692633  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 21464019 - 21464105
Alignment:
Q  111 gagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 197  Q
    ||||||| || |||||||| ||| |||| |||||||||||||||| ||| || | ||| |||||||||| ||||  |||||||||||    
T  21464019 gagagtccaccatttttgtcaaagctccttcagagaaaggtaaaaccacgcctagctctttcagcatatcagaacattcaagcccaa 21464105  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 35162732 - 35162669
Alignment:
Q  113 gagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagca 176  Q
    ||||| || |||||||| |||||||||  ||||||||||||||||||||| |  ||||||||||    
T  35162732 gagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagatccttcagca 35162669  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 35155714 - 35155632
Alignment:
Q  111 gagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagc 193  Q
    ||||||| || |||||||| ||||| |||  ||||||||||||||||||||| |  || |||||||||| ||||  |||||||    
T  35155714 gagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagc 35155632  T

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