View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19763_low_2 (Length: 636)
Name: NF19763_low_2
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19763_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 621
Target Start/End: Original strand, 12974653 - 12975249
Alignment:
| Q |
17 |
tgcgcatctttaagatggagctggccatgtggattattgaacatcacacacaatgagcgtaaggctatacacaatgcgagtgtgcaatttgaatttttcc |
116 |
Q |
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| T |
12974653 |
tgcgcatctttaagatggagctggccatgtggattattgaacatcacacacgatgagcgtaaggctatacacaatgcgagtgtgcaatttgaatttttcc |
12974752 |
T |
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| Q |
117 |
tatatgttgaatttctcaaccaaaaataagcattttgaattatatatattatgactttaaggctaaaggttcgatcgagggagtagaagtggcggttttt |
216 |
Q |
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| T |
12974753 |
tatatgttgaatttctcaaccaaaaataagcatttt------tatttattatgactttaaggctaaaggttcgatccagggagtagaagtggcggttttc |
12974846 |
T |
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| Q |
217 |
gccttttagaaacaagatcaaagatcatattcactctaa-catctattactcctttttccttttataatgtcnnnnnnnngtatgagttgcttaaaattt |
315 |
Q |
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| T |
12974847 |
gccttttagaaacaagatcaaagatcatattcactctaaacatctattactccttttacctttgataatgtcttttgttagtacgagttgctaagatttt |
12974946 |
T |
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| Q |
316 |
ttatttggggtgaatgatttaccttccttgccttgttttaaccatgtaatatattttgtcatcaagataagtgtaagtcatcaaagattgtgaacttcca |
415 |
Q |
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| T |
12974947 |
atattagggttgaatgattaaccttcatggcattgtttaaaccatgtaatatattatgtcatcaagataagtgtaagtcatcaaagagtgtgaacttcca |
12975046 |
T |
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| Q |
416 |
aattttcttaattggagtttgcgtttccaattattggtgcttatggaatactaatagtactgcagttaaaattttattccaaggtgacttgcaagcacga |
515 |
Q |
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| T |
12975047 |
aatcttcttaattggagttagggtttccaattattggtgcttatggaatac---tagtacttcaaataaaattatattccaaggtgacttgcaatcgcca |
12975143 |
T |
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| Q |
516 |
ataattttgctttgcagataaagattcaatcatggcgttgatttatgaatatgatggggaaaataagggtgttaatttttatgattgatggtataaccac |
615 |
Q |
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| T |
12975144 |
ataattttggttaccagataatgactcaatcatggggttgattcatgaatatgatggggaaaatacgggtgtcaatttttatgattggtggtataaccac |
12975243 |
T |
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