View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19763_low_22 (Length: 215)
Name: NF19763_low_22
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19763_low_22 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 4651610 - 4651725
Alignment:
| Q |
18 |
tatcacagttatgtatacaaactctgccccgatacctttctaagttataattgcggaaaagaaatcaagcacaacaacatgaatagtctcatgcataagt |
117 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4651610 |
tatcacaattatgtatacaaactctgccccaatacctttctaagttataattgcggaaaagaaatcaagcacaacaacatgaatagtctcatgcataagt |
4651709 |
T |
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| Q |
118 |
ttcactaccttttgct |
133 |
Q |
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|||||||||||||||| |
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| T |
4651710 |
ttcactaccttttgct |
4651725 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 4651941 - 4652001
Alignment:
| Q |
155 |
atgatatagcctttattaaacaatagtgaaactgcaaatttattgatgaactttggtcatt |
215 |
Q |
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| T |
4651941 |
atgatatagcctctattaaacaacagtgaaactgcaaatttattgatgaaccttggtcatt |
4652001 |
T |
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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 37077731 - 37077619
Alignment:
| Q |
18 |
tatcacagttatgtatacaaactctgcccc-gatacctttctaagttataattgcggaaaagaaatcaagcacaacaacatgaatagtctcatgcataag |
116 |
Q |
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||||||| ||||||||||||||||| |||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37077731 |
tatcacaattatgtatacaaactctacccctgatacctttccaagttataactgcggaaaagaaaccaagcacaacaacatgaatagtctcatgcataag |
37077632 |
T |
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| Q |
117 |
tttcactaccttt |
129 |
Q |
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| T |
37077631 |
tttcactaccttt |
37077619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 20423408 - 20423304
Alignment:
| Q |
29 |
tgtatacaaactctgccccgatacctttctaagttataattgcggaaaagaaatcaagcacaacaacatgaatagtctcatgcataagtttcactacctt |
128 |
Q |
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||||||||||||||| || |||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
20423408 |
tgtatacaaactctgacctgatacctttctaagttataactgcggaaaagaaaccaagcataacaacatgaatagtctcatgcataggtttcactacctt |
20423309 |
T |
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| Q |
129 |
ttgct |
133 |
Q |
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||||| |
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| T |
20423308 |
ttgct |
20423304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 20423146 - 20423100
Alignment:
| Q |
168 |
tattaaacaatagtgaaactgcaaatttattgatgaactttggtcat |
214 |
Q |
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|||||||||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
20423146 |
tattaaacaacagtgaaacttcaaatttattgatgaaccttggtcat |
20423100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 9883068 - 9883170
Alignment:
| Q |
29 |
tgtatacaaactctgccccgatacctttctaagttataattgcggaaaagaaatcaagcacaacaacatgaatagtctcatgcataagtttcactacctt |
128 |
Q |
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||||||||||||||| || |||||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
9883068 |
tgtatacaaactctgacctgatacctttcaaagttataactgcggaaaagaaaccaagcataacaacatgaatagtctcatgcataggtttcactacctt |
9883167 |
T |
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| Q |
129 |
ttg |
131 |
Q |
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||| |
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| T |
9883168 |
ttg |
9883170 |
T |
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Target: scaffold0028 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 19308 - 19354
Alignment:
| Q |
168 |
tattaaacaatagtgaaactgcaaatttattgatgaactttggtcat |
214 |
Q |
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|||||||||| | ||||||||||||||||||||||||| |||||||| |
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| T |
19308 |
tattaaacaacaatgaaactgcaaatttattgatgaaccttggtcat |
19354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 22068633 - 22068668
Alignment:
| Q |
98 |
gaatagtctcatgcataagtttcactaccttttgct |
133 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
22068633 |
gaatagtatcatgcataagtttcactaccttttgct |
22068668 |
T |
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