View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19763_low_5 (Length: 532)
Name: NF19763_low_5
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19763_low_5 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 236 - 516
Target Start/End: Original strand, 71307 - 71587
Alignment:
| Q |
236 |
cccagatgttaaatacaaatgacgaaatctctcattttattccaacctga-aatggagattttaatattttaaattttaccaagatggagcttcaaatta |
334 |
Q |
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| T |
71307 |
cccagatgttaaatacaaatgacgaaatctctcattttattccaacctgataatggagattttaatattttaaattttaccaagatggagcttcaaatta |
71406 |
T |
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| Q |
335 |
tcccaagagtggtttcaacacatcaaataacaagttatgaggaagtgtagtcgggagagctgtcataaactttaagcaattattggtaacgaatgttgtt |
434 |
Q |
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| T |
71407 |
tcccaagagtggtttcaacacatcaaataataagttatgaggaagtgtagtcgggagagctgtcataaactttaagcaattattggtaacgaatgttgtt |
71506 |
T |
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| Q |
435 |
gcatttgggacggattggttcaacttatttagaggtttctagaactggattggtacaaactttcgatttagaaaaagcaaag |
516 |
Q |
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| T |
71507 |
gcatttgggacggattggttcaacttatttagaggtttctagaactggattggtac-aactttcgatttagaaaaagcaaag |
71587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 70897 - 71098
Alignment:
| Q |
16 |
atgctatgatagtgcttatatagtttaaaggtatccacttcacttggagttgggattgaggttatttgaatgagtggaattcattaaaacttgtttcaga |
115 |
Q |
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| T |
70897 |
atgctatgatagtgcttatatagtttaaaggtatccacttcacttggagttgggattgaggttatttgaatgagtggaattcattaaaacttgtttcaga |
70996 |
T |
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| Q |
116 |
atgactcacatctctctcttttttatcctcccaatctttattgatttatttaaattttataattcattcaaaacttgttacgaattcctcaacattgact |
215 |
Q |
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| T |
70997 |
atgactcacatctctctcttttttatcctcccaatctttattgatttatttaaattttataattcattcaaaacttgttccaaattcctcaacatcgact |
71096 |
T |
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| Q |
216 |
cc |
217 |
Q |
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| T |
71097 |
cc |
71098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 13119806 - 13119710
Alignment:
| Q |
16 |
atgctatgatagtgcttatatagtttaaaggtatccacttcacttggagttgggattgaggttatttgaatgagtggaattcattaaaacttgtttca |
113 |
Q |
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| T |
13119806 |
atgctatgatagtgtttatatagttcaaaggtatctacttcaattgcagtgggga-tggggtgatttgaatgagtggaattcattaaaacttatttca |
13119710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 21313675 - 21313631
Alignment:
| Q |
52 |
acttcacttggagttgggattgaggttatttgaatgagtggaatt |
96 |
Q |
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| T |
21313675 |
actttacttgaagttgaggttgaggttatttgaatgagtggaatt |
21313631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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