View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19763_low_6 (Length: 525)

Name: NF19763_low_6
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19763_low_6
NF19763_low_6
[»] chr5 (29 HSPs)
chr5 (125-525)||(26405175-26405574)
chr5 (125-462)||(8297583-8297924)
chr5 (125-456)||(26045590-26045924)
chr5 (4-114)||(26404761-26404871)
chr5 (130-426)||(13953878-13954178)
chr5 (130-354)||(25992233-25992450)
chr5 (125-298)||(7194928-7195101)
chr5 (130-424)||(14302076-14302373)
chr5 (128-359)||(10174898-10175130)
chr5 (125-348)||(33109829-33110050)
chr5 (134-298)||(30097613-30097778)
chr5 (134-298)||(5187223-5187387)
chr5 (155-298)||(7682834-7682977)
chr5 (127-292)||(7391626-7391792)
chr5 (158-368)||(33258549-33258753)
chr5 (125-239)||(8731278-8731391)
chr5 (155-197)||(21391935-21391977)
chr5 (125-233)||(23426646-23426754)
chr5 (135-231)||(27713421-27713516)
chr5 (131-240)||(31742503-31742611)
chr5 (125-298)||(4914128-4914301)
chr5 (154-237)||(24071917-24072000)
chr5 (225-299)||(7403664-7403737)
chr5 (233-359)||(21398054-21398183)
chr5 (245-298)||(39183951-39184004)
chr5 (260-296)||(8731182-8731218)
chr5 (125-213)||(17853106-17853194)
chr5 (164-200)||(24401099-24401135)
chr5 (228-276)||(37108102-37108150)
[»] chr4 (26 HSPs)
chr4 (125-473)||(41117595-41117944)
chr4 (125-463)||(16832646-16832988)
chr4 (125-463)||(38636861-38637200)
chr4 (130-463)||(19814849-19815187)
chr4 (127-239)||(42719496-42719608)
chr4 (260-462)||(49528187-49528390)
chr4 (125-359)||(49747746-49747982)
chr4 (125-215)||(9262807-9262897)
chr4 (150-368)||(22810825-22811032)
chr4 (126-292)||(2061460-2061627)
chr4 (130-246)||(28967208-28967323)
chr4 (249-456)||(25753293-25753503)
chr4 (159-250)||(25754204-25754295)
chr4 (125-335)||(52009083-52009279)
chr4 (155-239)||(48098646-48098730)
chr4 (271-463)||(48098447-48098641)
chr4 (207-336)||(19311075-19311204)
chr4 (251-458)||(19673219-19673429)
chr4 (125-235)||(35947934-35948044)
chr4 (125-235)||(12296518-12296627)
chr4 (207-368)||(39420745-39420909)
chr4 (130-233)||(20632129-20632233)
chr4 (130-222)||(21983507-21983598)
chr4 (253-298)||(43373862-43373907)
chr4 (333-365)||(35341177-35341209)
chr4 (191-239)||(43077307-43077355)
[»] chr3 (26 HSPs)
chr3 (125-416)||(50518716-50519007)
chr3 (130-463)||(25647800-25648132)
chr3 (127-359)||(4170963-4171196)
chr3 (125-461)||(37123497-37123824)
chr3 (125-367)||(33143579-33143822)
chr3 (126-298)||(48892981-48893153)
chr3 (172-456)||(14194054-14194337)
chr3 (300-462)||(37998964-37999125)
chr3 (131-295)||(14280182-14280345)
chr3 (125-248)||(14893261-14893384)
chr3 (130-357)||(28937360-28937574)
chr3 (308-463)||(14879550-14879708)
chr3 (125-245)||(32010121-32010241)
chr3 (125-245)||(37998836-37998956)
chr3 (125-254)||(46358009-46358139)
chr3 (132-246)||(25594142-25594256)
chr3 (280-366)||(7105052-7105140)
chr3 (186-336)||(12086484-12086636)
chr3 (125-273)||(41039463-41039611)
chr3 (245-361)||(25594296-25594412)
chr3 (130-181)||(823029-823080)
chr3 (341-463)||(39021122-39021244)
chr3 (253-299)||(1652646-1652692)
chr3 (157-231)||(14754942-14755016)
chr3 (245-295)||(27399228-27399278)
chr3 (125-197)||(35609052-35609123)
[»] chr2 (34 HSPs)
chr2 (125-462)||(7696077-7696415)
chr2 (125-463)||(10173206-10173544)
chr2 (125-333)||(4974990-4975199)
chr2 (125-333)||(4992898-4993107)
chr2 (131-463)||(34230315-34230648)
chr2 (125-463)||(37770280-37770609)
chr2 (125-263)||(41086431-41086569)
chr2 (158-287)||(13337542-13337671)
chr2 (125-284)||(29139579-29139736)
chr2 (250-359)||(12343037-12343146)
chr2 (130-254)||(22884746-22884871)
chr2 (125-217)||(33533371-33533463)
chr2 (125-296)||(29997228-29997399)
chr2 (270-361)||(1269696-1269787)
chr2 (125-235)||(33788253-33788362)
chr2 (133-215)||(10772889-10772971)
chr2 (125-239)||(25504516-25504629)
chr2 (335-463)||(16952223-16952349)
chr2 (335-463)||(17022888-17023014)
chr2 (335-463)||(17060194-17060320)
chr2 (125-214)||(42802451-42802540)
chr2 (125-254)||(4472267-4472397)
chr2 (131-236)||(27740331-27740435)
chr2 (148-205)||(31115187-31115244)
chr2 (127-215)||(15361088-15361175)
chr2 (125-196)||(1269835-1269905)
chr2 (159-246)||(41113401-41113488)
chr2 (333-365)||(7874502-7874534)
chr2 (125-181)||(29487498-29487553)
chr2 (125-197)||(37559838-37559910)
chr2 (125-216)||(20572435-20572526)
chr2 (245-294)||(13699051-13699100)
chr2 (125-181)||(8793515-8793571)
chr2 (260-296)||(25504689-25504725)
[»] chr7 (23 HSPs)
chr7 (125-460)||(24324425-24324761)
chr7 (125-437)||(1320935-1321246)
chr7 (131-368)||(33719174-33719413)
chr7 (137-293)||(16828739-16828895)
chr7 (131-370)||(42532892-42533134)
chr7 (125-319)||(16954749-16954942)
chr7 (125-222)||(6726046-6726143)
chr7 (130-470)||(3478459-3478797)
chr7 (307-463)||(8745267-8745426)
chr7 (125-239)||(44755908-44756021)
chr7 (127-222)||(47456703-47456797)
chr7 (245-298)||(22567877-22567930)
chr7 (130-234)||(28534137-28534240)
chr7 (255-362)||(23983420-23983528)
chr7 (245-319)||(28534276-28534349)
chr7 (131-231)||(48058306-48058405)
chr7 (125-231)||(8745477-8745583)
chr7 (227-298)||(6492859-6492931)
chr7 (125-463)||(6716363-6716704)
chr7 (158-239)||(36674810-36674891)
chr7 (125-201)||(43235688-43235764)
chr7 (125-180)||(40292637-40292691)
chr7 (127-246)||(25438690-25438810)
[»] scaffold0050 (1 HSPs)
scaffold0050 (125-459)||(36827-37161)
[»] chr1 (39 HSPs)
chr1 (125-296)||(11439647-11439817)
chr1 (125-463)||(34774985-34775325)
chr1 (137-463)||(31290660-31290986)
chr1 (125-359)||(32882584-32882817)
chr1 (125-368)||(27102401-27102636)
chr1 (125-253)||(9312967-9313095)
chr1 (125-355)||(10785088-10785319)
chr1 (130-419)||(46768340-46768626)
chr1 (125-251)||(4431003-4431129)
chr1 (125-245)||(9557241-9557362)
chr1 (125-199)||(7451888-7451962)
chr1 (129-319)||(46603623-46603810)
chr1 (207-359)||(16148993-16149148)
chr1 (155-239)||(376463-376547)
chr1 (177-296)||(32863225-32863345)
chr1 (242-363)||(38548821-38548942)
chr1 (127-234)||(17033939-17034045)
chr1 (125-216)||(27905794-27905885)
chr1 (142-273)||(52278589-52278717)
chr1 (313-425)||(9313121-9313236)
chr1 (155-237)||(41126108-41126190)
chr1 (269-359)||(41126261-41126353)
chr1 (398-463)||(6583118-6583183)
chr1 (219-298)||(6582972-6583052)
chr1 (156-236)||(37200485-37200565)
chr1 (245-361)||(38544503-38544619)
chr1 (130-192)||(10605082-10605144)
chr1 (130-246)||(49820488-49820605)
chr1 (130-239)||(50588909-50589014)
chr1 (399-463)||(16147672-16147736)
chr1 (157-245)||(38544375-38544463)
chr1 (259-318)||(16577520-16577579)
chr1 (130-222)||(47295356-47295443)
chr1 (125-195)||(12636086-12636156)
chr1 (130-239)||(19598990-19599098)
chr1 (125-203)||(26602452-26602528)
chr1 (156-246)||(38546841-38546931)
chr1 (308-406)||(4430862-4430962)
chr1 (125-165)||(34159057-34159097)
[»] scaffold0063 (1 HSPs)
scaffold0063 (148-441)||(58263-58559)
[»] chr8 (13 HSPs)
chr8 (125-426)||(10248192-10248497)
chr8 (125-359)||(17656363-17656600)
chr8 (131-368)||(12197708-12197948)
chr8 (131-368)||(12442136-12442376)
chr8 (125-370)||(8862251-8862499)
chr8 (130-359)||(22325734-22325957)
chr8 (130-217)||(8843746-8843831)
chr8 (125-191)||(43312282-43312348)
chr8 (366-461)||(17656872-17656967)
chr8 (400-458)||(8862505-8862563)
chr8 (245-298)||(30235879-30235932)
chr8 (255-291)||(25184917-25184953)
chr8 (207-298)||(41790977-41791069)
[»] chr6 (9 HSPs)
chr6 (129-463)||(20701429-20701770)
chr6 (125-441)||(3880239-3880543)
chr6 (131-304)||(15120235-15120409)
chr6 (133-294)||(6860317-6860479)
chr6 (130-237)||(17278094-17278201)
chr6 (130-196)||(16180489-16180554)
chr6 (125-222)||(13423719-13423816)
chr6 (257-297)||(16180675-16180715)
chr6 (227-298)||(5607704-5607775)
[»] scaffold1384 (1 HSPs)
scaffold1384 (125-359)||(1286-1519)
[»] scaffold0119 (2 HSPs)
scaffold0119 (270-361)||(41915-42006)
scaffold0119 (125-196)||(41797-41867)
[»] scaffold0200 (1 HSPs)
scaffold0200 (270-361)||(19596-19687)
[»] scaffold1613 (2 HSPs)
scaffold1613 (245-361)||(782-898)
scaffold1613 (157-245)||(654-742)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 125 - 525
Target Start/End: Original strand, 26405175 - 26405574
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||| |    
T  26405175 aacaacaaattttattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacac 26405274  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||    
T  26405275 ccgaaaataaacaccttaaaaacacccctgaggacaacaaccaccaaaatacacgtcaccacctaaaacagacttcttcatggaaatgac-actgttaaa 26405373  T
Q  325 accatatccaaccacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaa 424  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||| ||  ||||||||||||||||   |||||||||||||||    
T  26405374 accatatccaatcacccatcgtcactactcacctcaaagaaaaacactcatcaaaattaaactcctcgtcctgaacaccaaagtcgagccacctccgaaa 26405473  T
Q  425 agctcatatccgaaagaccaattagcttccaccacctctggatctctgaaggagcagtttattatactttgtgacaaataattctcaatctattttaggt 524  Q
    |||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26405474 agctcatatccgaaagaccaatcagcttccaccacctctcgatctccgaaggagcagtttattatactttgtgacaaataattctcaatctattttaggt 26405573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 125 - 462
Target Start/End: Complemental strand, 8297924 - 8297583
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |||  ||| |||||| |||| |    
T  8297924 aacagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaatacaaa-aaaaggcgttgtacataggcggaacac 8297826  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
    | ||||||| ||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||  |||| | ||| ||||| ||| |||    
T  8297825 ctgaaaatacacaccctaaaaacacccctgaggataacatccaccaaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaa 8297726  T
Q  325 accatatccaaccacccatcgtcactactca-----ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctc 419  Q
    || || |||||||||| ||||||||||||||     ||||||||||||||| || ||||||||||| || || || ||||||||||||| ||||||| ||    
T  8297725 acgatttccaaccacctatcgtcactactcactcacccccaaagaaaaacacccctcaaaattaaactccccatcatgaacaccaaaaccgagccacatc 8297626  T
Q  420 cgaaaagctcatatccgaaagaccaattagcttccaccacctc 462  Q
    |||||||||| |||||||||||||| | | |||||||||||||    
T  8297625 cgaaaagctcctatccgaaagaccattcaacttccaccacctc 8297583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 125 - 456
Target Start/End: Original strand, 26045590 - 26045924
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    ||||| ||||||||||||||||  |||||  ||||||| ||||||| |||||||||||  |||| |||||||||||| ||| ||||||||| | ||||      
T  26045590 aacaataaattttattaaacaactagatcaatgctcaaaacgaacagagaccggtgaagttgagcatacaaacaaaaggcgccgtatatagacggaacat 26045689  T
Q  225 ccgaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    || |||||||||||| |||||| | ||||| ||||||||| |||||||||| ||| |||||||||||||||||||| |||||| ||| |||||| || ||    
T  26045690 ccaaaaataaacaccctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaa 26045789  T
Q  324 aaccatatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccg 421  Q
    ||| | |||||||  | |||||||||||||||||||||||||||||||| || ||||||||||| || |  |||| |||||||||  |||| ||||||||    
T  26045790 aacgaaatccaacacctcccatcgtcactactcaccccaaagaaaaacacccctcaaaattaaactctcaatcctaaacaccaaagttgagtcacctccg 26045889  T
Q  422 aaaagctcatatccgaaagaccaattagcttccac 456  Q
    ||||||||||||| |||||| |||| |||||||||    
T  26045890 aaaagctcatatctgaaagatcaatcagcttccac 26045924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 26404761 - 26404871
Alignment:
Q  4 atactactccgatcttaaatatacacaacaaaaatcaagcaaatttgacatatctagctctattttttaaccacattcatcataactttgttgaattttc 103  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26404761 atactactctgatcttaaatatacacaacaaaaatcaagcaaaattgacatatctagctcaattttttaaccacattcatcataactttgttgaattttc 26404860  T
Q  104 ttttattctta 114  Q
    |||| ||||||    
T  26404861 ttttcttctta 26404871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 130 - 426
Target Start/End: Original strand, 13953878 - 13954178
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtg--aaactgagaatacaaacaaaaagcggcgtatataggcagaacccccg 227  Q
    ||||||||||| |||   ||| ||||||||||||||||||| |||||||||  ||||||||| ||||||| ||| ||| ||||||||||| |||| || |    
T  13953878 caaattttatttaacctccaggtctctgctcaagacgaacagagaccggtgtgaaactgagagtacaaactaaaggcgccgtatataggcggaacacctg 13953977  T
Q  228 aaaataaacacctt-aaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaac 326  Q
    |||||||||||||| ||||| |||| | ||||||||  |||||||||||||  ||| | |||||||||||||| |||||| | ||||| ||||| |||||    
T  13953978 aaaataaacaccttaaaaaatacccttgaggacaactcccaccaaaatacatgtcatctcctaaaacagactttttcatgaagacgactactgtaaaaac 13954077  T
Q  327 catatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaa 424  Q
     |||||| ||  ||||||||||||| |||| |||| ||   ||||| || || |||||||| || | ||||| ||| ||||| ||||||||| |||||||    
T  13954078 aatatcccacatcacccatcgtcacaactctcccccaa-cgaaacacccctctaaattaaactcccagtcctcaacgccaaagctgagccacatccgaaa 13954176  T
Q  425 ag 426  Q
    ||    
T  13954177 ag 13954178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 130 - 354
Target Start/End: Complemental strand, 25992450 - 25992233
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||| |||||||| || |||| |||||     
T  25992450 caaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaaaatgataatacaaacaaaaggcgccgtatatatgcggaacacccgac 25992351  T
Q  230 aataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccat 329  Q
    |||||||||| |||||||||||| || ||||||| ||||||||||        |||||||||||||||   |||| | || | |||||||| ||||| ||    
T  25992350 aataaacaccctaaaaacacccc-aatgacaacacccaccaaaat--------ccacctaaaacagaccccttcacgaaagcaaccactgtaaaaacgat 25992260  T
Q  330 atcca--accacccatcgtcactactc 354  Q
    |||||  ||||||||||| ||||||||    
T  25992259 atccaataccacccatcgccactactc 25992233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 125 - 298
Target Start/End: Original strand, 7194928 - 7195101
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||||||||| |||||| || ||||||||||||||||| || |||||||||||||| | |||||| | | ||| |||| || ||||      
T  7194928 aacagcaaattttattaaacaaccagatccctactcaagacgaacaaagatcgatgaaactgagaatatagacaaaatgagtcgtttatatgcggaacat 7195027  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    || |||||||||||| |||||||||| ||  |||||||| |||||||||||||| |||||||||||||||||||    
T  7195028 ccaaaaataaacaccctaaaaacaccgctgcggacaacacccaccaaaatacacgtcaccacctaaaacagact 7195101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 130 - 424
Target Start/End: Original strand, 14302076 - 14302373
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    |||||||||||| | || |||||| ||| | ||||| |||||| | | |||||| ||| |||| |||||| |  || |||||||||   |||| ||| ||    
T  14302076 caaattttattagagaaccagatccctgtttaagacaaacaaaaatcagtgaaattgaaaatataaacaagagacgccgtatatagaaggaacacccaaa 14302175  T
Q  230 aataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccat 329  Q
    |||||| | | ||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||| |  |||  | ||||||||| ||| ||||| ||    
T  14302176 aataaaaatcctaaaaacacccctgatgacaacacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgat 14302275  T
Q  330 atcca--accacccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaa 424  Q
    |||||  ||||||  ||||||||||||| ||||||||||||| | || ||||||||||| || |  |||||||||||||| ||||||||  |||||||    
T  14302276 atccaacaccacctgtcgtcactactcatccccaaagaaaaatacccctcaaaattaaactcccactcctgaacaccaaagctgagccatatccgaaa 14302373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 128 - 359
Target Start/End: Complemental strand, 10175130 - 10174898
Alignment:
Q  128 aacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccg 227  Q
    ||||||||||||||| ||| ||||||  | ||||| | ||||| |||||||||||| | ||||||||||||||| ||  |||||||||||| ||| || |    
T  10175130 aacaaattttattaatcaaccagatccttactcaaaatgaacagagaccggtgaaattaagaatacaaacaaaaggcatcgtatataggcaaaacacctg 10175031  T
Q  228 aaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaacc 327  Q
     ||||||||| | |||||||||| |  ||||||||| |||||||| ||||| | |||||||||||||||||  |||    |||||||||| || |||||     
T  10175030 -aaataaacatcctaaaaacacctccgaggacaacacccaccaaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacg 10174932  T
Q  328 atatccaaccacccatc--gtcactactcacccc 359  Q
    |||||||||||||||||   ||||||||||||||    
T  10174931 atatccaaccacccatcatatcactactcacccc 10174898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 125 - 348
Target Start/End: Original strand, 33109829 - 33110050
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||| ||||||||||| || ||||||||| |||||||||| | |  |||||||||||||||||||||||||  ||  |||||  | |  ||| |    
T  33109829 aacagcaaatattattaaacaatcaaatctctgcttaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtata--gccgaaacac 33109926  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
    |||||||||||||| ||||||||||||   | ||||||| |||||||||||||| ||| ||||||||||| ||   |||| | ||||||||||||| |||    
T  33109927 ccgaaaataaacactttaaaaacaccct--atgacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaa 33110024  T
Q  325 accatatcca--accacccatcgtca 348  Q
    || |||||||  ||||||||||||||    
T  33110025 acgatatccaataccacccatcgtca 33110050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 134 - 298
Target Start/End: Complemental strand, 30097778 - 30097613
Alignment:
Q  134 ttttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaata 233  Q
    |||| ||||||||  |||| |||||| ||||||||||||||||||| ||    ||||||||||| |||  || ||||||||||| |||| ||||||||||    
T  30097778 tttttttaaacaactagatttctgcttaagacgaacaaagaccggtaaattaaagaatacaaactaaagacgccgtatataggcggaacacccgaaaata 30097679  T
Q  234 aacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    |||||| |||||| || || | | ||||||| |||||||||||||| |||||||||||||||||||    
T  30097678 aacaccctaaaaaacatccatgatgacaacacccaccaaaatacacgtcaccacctaaaacagact 30097613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 298
Target Start/End: Complemental strand, 5187387 - 5187223
Alignment:
Q  134 ttttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaata 233  Q
    |||||||||||||  | |||||||||||||| || || ||| |||||||| ||||||||||||||||| ||| || ||||||    | | ||||||||||    
T  5187387 ttttattaaacaactaaatctctgctcaagaagagcagagatcggtgaaattgagaatacaaacaaaaggcgccgcatatagatgaagcacccgaaaata 5187288  T
Q  234 aacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    |||||| ||||| ||| | | |||| |||| ||||| || |||||||||||||||||| ||||||    
T  5187287 aacaccataaaagcactcatgaggataacatccacccaagtacacatcaccacctaaaccagact 5187223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 155 - 298
Target Start/End: Complemental strand, 7682977 - 7682834
Alignment:
Q  155 ctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaaacaccccta 254  Q
    ||||||||||||||   |||| ||||||||||||||||||||  ||| ||| ||||||||||| ||||  |||||||||| ||||  ||||| ||   |     
T  7682977 ctgctcaagacgaatgtagacgggtgaaactgagaatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcacccaaaaaatacttatg 7682878  T
Q  255 aggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    || |||||| |||||||||||||||||||||||||||| |||||    
T  7682877 agaacaacacccaccaaaatacacatcaccacctaaaatagact 7682834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 127 - 292
Target Start/End: Original strand, 7391626 - 7391792
Alignment:
Q  127 caacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaa--caaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||||  | |||||||||| |||||||||||| |||||||||||| ||||||||||||    ||| | |  |||||||||| |||  |    
T  7391626 caacaaattttattaaatcatcagatctctgttcaagacgaacagagaccggtgaaaatgagaatacaaagtgtaaatgtgctgtatataggcggaaaac 7391725  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaa 292  Q
    | |||| || ||| | ||||||||||| | ||||||||| ||| |||||||||  |||||||||||||    
T  7391726 ctgaaagtacacaacctaaaaacacccatgaggacaaca-ccatcaaaatacatgtcaccacctaaaa 7391792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 158 - 368
Target Start/End: Original strand, 33258549 - 33258753
Alignment:
Q  158 ctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaaacacccctaagg 257  Q
    ||||| ||||||| |||||||||||| ||  |||||||| |||| ||| |||||||| |   ||| |||||||||||||||| |||||||| ||| || |    
T  33258549 ctcaaaacgaacagagaccggtgaaattggaaatacaaataaaaggcgccgtatatatgtgaaacacccgaaaataaacaccataaaaacatccc-aaag 33258647  T
Q  258 acaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcca--accacccatcgtcactactca 355  Q
    |||||| ||| ||||||        ||||||||||||||  | |||| | || |||||||||| ||||| |||||||  |||| |||||| |||||||||    
T  33258648 acaacacccatcaaaat--------ccacctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactca 33258739  T
Q  356 cccc-aaagaaaaa 368  Q
    |||| |||||||||    
T  33258740 cccctaaagaaaaa 33258753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 8731391 - 8731278
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| |||||||||||||| || |||||| ||||||||||| |||| | ||||||||  | |||||||||||||||| ||| ||||||||| |  ||| |    
T  8731391 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 8731293  T
Q  225 ccgaaaataaacacc 239  Q
    || ||||||||||||    
T  8731292 ccaaaaataaacacc 8731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 21391935 - 21391977
Alignment:
Q  155 ctgctcaagacgaacaaagaccggtgaaactgagaatacaaac 197  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21391935 ctgctcaagacgaacaaagaccggtgaaactgagaatacaaac 21391977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 23426754 - 23426646
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||| || || |||||  |||||||||| ||||| ||||||||||  | ||||||||||  |||| | | ||||||||||| |||| |    
T  23426754 aacagcaaattttatttaaaaatcagattgctgctcaagaggaacagagaccggtgattcagagaatacaactaaaaggtgccgtatataggcggaacac 23426655  T
Q  225 ccgaaaata 233  Q
    |||||||||    
T  23426654 ccgaaaata 23426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 27713516 - 27713421
Alignment:
Q  135 tttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaa 231  Q
    ||||||||| || |||||| ||| |||||||||||  ||||| ||||||||||| |||||||| ||| ||| | ||||||||| |||| ||||||||    
T  27713516 tttattaaa-aaccagatccctgttcaagacgaactgagaccagtgaaactgaggatacaaacgaaaggcgccatatataggcggaacacccgaaaa 27713421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 31742611 - 31742503
Alignment:
Q  131 aaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaa-tacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    ||||||||||||| || | |||| |||| ||||||||||| |||||||||  ||  |||| ||||||||||| ||| ||||||||||| |||| ||||||    
T  31742611 aaattttattaaa-aacctgatccctgcacaagacgaacagagaccggtgttaca-agaagtacaaacaaaaggcgccgtatataggcggaacacccgaa 31742514  T
Q  230 aataaacacct 240  Q
    || ||||||||    
T  31742513 aacaaacacct 31742503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 298
Target Start/End: Original strand, 4914128 - 4914301
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||| ||||||||||| |  ||||| ||| |||||||||| | | || ||||||||||||||||| ||  ||| | | |||||||| || ||||      
T  4914128 aacaacaatttttattaaaccattagatc-ctgttcaagacgaatagatac-ggtgaaactgagaatactaattaaaggtgtcgtatatatgcggaacat 4914225  T
Q  225 ccgaaaataaacacctt--aaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    |||| ||||||| |  |  |||||||| ||| ||||  ||| |||||||||||||| |||||||||||| ||||||    
T  4914226 ccgataataaaccctctaaaaaaacactcctgaggattacacccaccaaaatacacttcaccacctaaatcagact 4914301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 24071917 - 24072000
Alignment:
Q  154 tctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaaca 237  Q
    |||||| ||||| ||||||||||| |||  | || ||||||||| ||  ||| ||||||||||| |||| ||||||||||||||    
T  24071917 tctgcttaagacaaacaaagaccgatgattcagataatacaaactaagggcgccgtatataggcggaacacccgaaaataaaca 24072000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 7403737 - 7403664
Alignment:
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagactt 299  Q
    ||||||||||||||| |||||| |||| | | ||||||| |||||||||| ||| |||||||| |||||| ||||    
T  7403737 ccgaaaataaacaccctaaaaa-acccatgaagacaacacccaccaaaattcacgtcaccaccgaaaacaaactt 7403664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 359
Target Start/End: Original strand, 21398054 - 21398183
Alignment:
Q  233 aaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatat 331  Q
    ||||||||||||| |||||||| |||||||||   || ||||||||| |||||| |||||||||||   |||| | |||| |||  ||| ||||| ||||    
T  21398054 aaacaccttaaaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatat 21398153  T
Q  332 cc--aaccacccatcgtcactactcacccc 359  Q
    ||   |||||||||| ||| ||||||||||    
T  21398154 cccgcaccacccatcatcagtactcacccc 21398183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 39183951 - 39184004
Alignment:
Q  245 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    ||||||| | ||||||||| |||| |||||| | ||||||||||||||||||||    
T  39183951 aacacccttgaggacaacacccactaaaataaagatcaccacctaaaacagact 39184004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 8731218 - 8731182
Alignment:
Q  260 aacagccaccaaaatacacatcaccacctaaaacaga 296  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  8731218 aacacccaccaaaataaacatcaccacctaaaacaga 8731182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 17853106 - 17853194
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatat 213  Q
    |||||||||||||||| || || |||||| |||||||||| ||| | | ||||||||  | || ||||||||| ||| ||| |||||||    
T  17853106 aacaacaaattttatttaaaaaccagatccctgctcaagatgaatataaaccggtgattcagaaaatacaaactaaatgcgccgtatat 17853194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 24401135 - 24401099
Alignment:
Q  164 acgaacaaagaccggtgaaactgagaatacaaacaaa 200  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  24401135 acgaacagagaccggtgagactgagaatacaaacaaa 24401099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 37108150 - 37108102
Alignment:
Q  228 aaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatac 276  Q
    |||||||||||| ||||||||||| | |||| |||| ||||||||||||    
T  37108150 aaaataaacaccctaaaaacacccatgaggataacacccaccaaaatac 37108102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 125 - 473
Target Start/End: Original strand, 41117595 - 41117944
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| |||| ||||||| ||||| ||||||||| | ||  ||||||||||| |||| |    
T  41117595 aacaacaaattttattaaacaactagatctctgctcaagacgaacagagacaggtgaaattgagactacaaacaagaggcatcgtatataggcggaacac 41117694  T
Q  225 ccgaaaataaacaccttaaa-aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    ||||||||||||||| |||| |||| || | ||||||||| ||||||||||||| ||||||||||| |||||||| || || | |||| |||  ||| ||    
T  41117695 ccgaaaataaacaccctaaataaca-ccatgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaa 41117793  T
Q  324 aaccatatccaaccacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccga 422  Q
    ||| ||||||||||||||||||||| ||||||||||   ||||||||| || ||| ||| ||| || |  || ||||||||||| ||||||||||||||     
T  41117794 aacgatatccaaccacccatcgtcattactcacccctttagaaaaacacccctcagaataaaactcccgatcatgaacaccaaacctgagccacctccgc 41117893  T
Q  423 aaagctcatatccgaaagaccaattagcttccaccacctctggatctctga 473  Q
    ||||||| ||| ||||||| || | |||||||||||||||| || ||||||    
T  41117894 aaagctcctattcgaaagatcattcagcttccaccacctctcgacctctga 41117944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 125 - 463
Target Start/End: Original strand, 16832646 - 16832988
Alignment:
Q  125 aacaacaaattttattaaa-caaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacc 223  Q
    ||||||||||||||||||| ||| |||| | || |||||||| |||| | | |||||||||||||||||||||||||| |||  | |||||||| ||||     
T  16832646 aacaacaaattttattaaaacaaccagaccccttctcaagacaaacagaaatcggtgaaactgagaatacaaacaaaaggcgctgcatataggcggaaca 16832745  T
Q  224 cccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatg-gaaacgaccactgtta 322  Q
    ||  |||||||||||| ||||||| | ||| ||||||||| ||||| ||||| || ||||||||||||||| | |  | || |  |||||||| |||| |    
T  16832746 ccaaaaaataaacaccctaaaaactctcctgaggacaacacccacc-aaataaacgtcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaa 16832844  T
Q  323 aaaccatatcca--accacccatcgtcactactcaccccaaag-aaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctc 419  Q
    |||  |||||||  ||||||| ||||||||||||||||||||| ||||||| || ||||||||||| || | ||| |||||||||||  |||||||| ||    
T  16832845 aaaagatatccaacaccacccgtcgtcactactcaccccaaagaaaaaacacccctcaaaattaaactcacagtcttgaacaccaaagttgagccacatc 16832944  T
Q  420 cgaaaagctcatatccgaaagaccaattagcttccaccacctct 463  Q
    |||||||||||||||| ||||| || | |||||| | |||||||    
T  16832945 cgaaaagctcatatcccaaagatcattcagcttcaatcacctct 16832988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 125 - 463
Target Start/End: Original strand, 38636861 - 38637200
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||||||||| ||| || | | ||| |||||||| |||||||||||| ||||| ||||||||| | ||| ||||| ||||| |||| |    
T  38636861 aacagcaaattttattaaacaaccaggtccccgttcaggacgaacagagaccggtgaaaatgagactacaaacaagaggcgccgtat-taggcggaacac 38636959  T
Q  225 ccgaaaataaacaccttaaa-aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    | |||||||||||||||||| || |||||  ||||||||| |||| ||||||||  ||||||||||||||| |||  |||| | |||| ||| |||| ||    
T  38636960 ctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaa 38637059  T
Q  324 aaccatatccaaccacccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccga 422  Q
    ||  |||||||||||||||||||||||||||| ||||  ||||||||| || | | | | ||| || |  || |||||||||||  ||| || |||| |     
T  38637060 aatgatatccaaccacccatcgtcactactcacccccttagaaaaacaccccttatactaaaactcccaatcttgaacaccaaagttgaaccgcctcggc 38637159  T
Q  423 aaagctcatatccgaaagaccaattagcttccaccacctct 463  Q
    ||||||| |||| |||||| || | ||||||||||||||||    
T  38637160 aaagctcttatctgaaagatcattcagcttccaccacctct 38637200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 463
Target Start/End: Original strand, 19814849 - 19815187
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaac-aaaaagcggcgtatataggcagaacccccga 228  Q
    ||||||||||| ||||| |||||| |||||||||||||||| |||||| | |||| |||| ||||||| |||| |||  ||||||| ||||||| ||| |    
T  19814849 caaattttatttaacaaccagatccctgctcaagacgaacagagaccgataaaacagagagtacaaactaaaaggcgttgtatataagcagaacacccaa 19814948  T
Q  229 aaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcacc---acctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
    ||||||||| | ||||| ||||    |||||||||| ||||||||| |||| |||||   |||| |||||||| | |||| | ||| |||||| || |||    
T  19814949 aaataaacatcataaaagacactttcaaggacaacacccaccaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccacggtaaaa 19815048  T
Q  325 accatatcca--accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccga 422  Q
    |  |||||||  |||| || | ||||||||||||||| ||  || || ||  |||| |||||| || | ||||| |||||||||  | |||||| || ||    
T  19815049 atgatatccaataccatccgttgtcactactcacccccaaagaacacttc--tcaagattaaactctcagtcctcaacaccaaagtttagccacatcgga 19815146  T
Q  423 aaagctcatatccgaaagaccaattagcttccaccacctct 463  Q
    |||| || ||||||||||| || ||||||||||||| ||||    
T  19815147 aaagttcctatccgaaagatcatttagcttccaccatctct 19815187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 42719608 - 42719496
Alignment:
Q  127 caacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccccc 226  Q
    |||||||||||||||||||| || ||| |||||||||||||| | ||||||||||||||||||||||||||||||  || |||||||| || |||  ||     
T  42719608 caacaaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaatacaaacaaaagacgccgtatataagcggaaaacct 42719509  T
Q  227 gaaaataaacacc 239  Q
    |||||||||||||    
T  42719508 gaaaataaacacc 42719496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 462
Target Start/End: Complemental strand, 49528390 - 49528187
Alignment:
Q  260 aacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactca-ccc 358  Q
    |||| ||||||||| |||| ||| ||||||||| |||||  ||||||  | |||||||| ||||||| |||| |||||| ||||| |||||||||| |||    
T  49528390 aacacccaccaaaaaacacgtcatcacctaaaatagactccttcatgacaccgaccactattaaaacgatattcaaccatccatcttcactactcacccc 49528291  T
Q  359 caaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccacca 458  Q
    |  ||||||||| || ||||||| ||| || | ||| ||||||||||| |||| |||| |||| ||||||  ||||||||||| || | | |||||||||    
T  49528290 cttagaaaaacacccctcaaaataaaactctcagtcttgaacaccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccacca 49528191  T
Q  459 cctc 462  Q
    ||||    
T  49528190 cctc 49528187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 125 - 359
Target Start/End: Complemental strand, 49747982 - 49747746
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctct-gctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacc 223  Q
    |||| ||||||||||||||||| || || ||| |||||||||||| | |||| ||||||| | || ||||||||||||  |  |||||||| || ||||     
T  49747982 aacatcaaattttattaaacaaccatat-tctcgctcaagacgaatagagactggtgaaatttagcatacaaacaaaagacatcgtatatatgcggaaca 49747884  T
Q  224 cccgaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgtta 322  Q
     || |||||||||||| |||||| |||| || ||||||||| |||||||||| ||  |||||||||||||||||||  |||| | ||||||||| ||| |    
T  49747883 tccaaaaataaacaccataaaaaacacctctgaggacaacacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaa 49747784  T
Q  323 aaaccatatcca--accacccatcgtcactactcacccc 359  Q
    |||| | |||||  ||| ||||| |||||||||||||||    
T  49747783 aaacga-atccaacaccgcccattgtcactactcacccc 49747746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 9262897 - 9262807
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatatag 215  Q
    |||| ||||||||||||||||| || ||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  9262897 aacagcaaattttattaaacaaccaaatccccgctcaagacgaacaaagaccgatgaaactgagaatacaaacaaaaggcgccgtatatag 9262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 150 - 368
Target Start/End: Original strand, 22810825 - 22811032
Alignment:
Q  150 gatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaaacac 249  Q
    |||| |||||||||||||||| |||| ||||||| ||||||||||||||||  ||| |||||||| || |||   |||||| |||||||| || |         
T  22810825 gatccctgctcaagacgaacagagactggtgaaattgagaatacaaacaaag-gcgccgtatataagcggaatatccgaaagtaaacaccctaga----- 22810918  T
Q  250 ccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcac 349  Q
          ||||  || |||||||||||||| ||||| |||||||||||||  |||| | || |||||||||| ||||| |||||| |||| ||||||||||    
T  22810919 ------ggacctcacccaccaaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcctaccatccatcgtcac 22811012  T
Q  350 tactca-ccccaaagaaaaa 368  Q
    |||||| |||||||||||||    
T  22811013 tactcacccccaaagaaaaa 22811032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 292
Target Start/End: Original strand, 2061460 - 2061627
Alignment:
Q  126 acaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccc 225  Q
    ||||||||||||||||||||  |||||| |||| ||||||||||| | || | ||||||||||||||||||||| | |    |||||||||| ||||  |    
T  2061460 acaacaaattttattaaacagtcagatccctgcccaagacgaacagaaactgatgaaactgagaatacaaacaagaggtcttgtatataggcggaacatc 2061559  T
Q  226 cgaaaataaacac-cttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaa 292  Q
     || ||||||||| || ||||| |||||| ||| ||||| ||| |||||||||  |||||||||||||    
T  2061560 tgataataaacacactaaaaaatacccctgagggcaacacccatcaaaatacaagtcaccacctaaaa 2061627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 28967323 - 28967208
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    ||||||||||| || || ||||| ||||||||||||||||| ||| ||||||||| || ||||||||| ||| |||  |||||||||| |||| || |||    
T  28967323 caaattttatttaa-aaccagatttctgctcaagacgaacagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaa 28967225  T
Q  230 aataaacaccttaaaaa 246  Q
    |||||||||| ||||||    
T  28967224 aataaacaccctaaaaa 28967208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 456
Target Start/End: Complemental strand, 25753503 - 25753293
Alignment:
Q  249 cccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac--cacccatcgt 346  Q
    ||||| ||||||||| |||||||||||||  ||| ||||||||||| |||  |||| | ||| | ||||||| ||| |  ||||||||  ||  ||||||    
T  25753503 cccctgaggacaacacccaccaaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaacatcattcatcgt 25753404  T
Q  347 cactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaa 445  Q
    ||||||||||||| ||||||||||| || ||||||||||| |  | |||||||||| ||||  ||| |||| ||| |||||||  | ||||||||| ||     
T  25753403 cactactcacccccaaagaaaaacacccctcaaaattaaactttcagtcctgaacatcaaagttgaaccacatccaaaaagcttctctccgaaagatcat 25753304  T
Q  446 ttagcttccac 456  Q
    | |||||||||    
T  25753303 tcagcttccac 25753293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 25754295 - 25754204
Alignment:
Q  159 tcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaaacacc 250  Q
    |||||||||||||||||| ||  ||||||||||||||| |||||||| ||||||||| | ||||  | ||||||||||||| ||||||||||    
T  25754295 tcaagacgaacaaagaccagtataactgagaatacaaataaaaagcgccgtatatagacggaacatctgaaaataaacaccataaaaacacc 25754204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 335
Target Start/End: Complemental strand, 52009279 - 52009083
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||||||| | |||||| |||| ||||||||| | ||| ||||||||||||| || |||||| || ||| ||||||||||| |||| |    
T  52009279 aacagcaaattttattaaactaccagatccctgcccaagacgaatagagatcggtgaaactgagcatgcaaacataaggcgccgtatataggcggaacac 52009180  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
                 ||| |||||||||||| ||||||||  |||||||||  |||  ||||||||||||||||||   |||||||| |||||||||| |||    
T  52009179 -------------cctaaaaaacacccctgaggacaac-cccaccaaaaatcacgccaccacctaaaacagactccgtcatggaagcgaccactgtaaaa 52009094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 48098730 - 48098646
Alignment:
Q  155 ctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacacc 239  Q
    |||||||||||||||  ||| |||||||||||| |||||||||||||  ||  |||||||||| |||| ||||||||||||||||    
T  48098730 ctgctcaagacgaacggagatcggtgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacacc 48098646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 463
Target Start/End: Complemental strand, 48098641 - 48098447
Alignment:
Q  271 aaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcca--accacccatcgtcactactcacccc-aaagaaaa 367  Q
    |||||||| |||||||||||||||  |||  |||   ||||||||||||| ||||| |||||||  || |||| ||||||||||||||||| ||||||||    
T  48098641 aaatacacgtcaccacctaaaacactctt--tcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaa 48098544  T
Q  368 -acatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 463  Q
     ||| || | |||| |||| || | ||| | |||||||||  |||||||| |||||||||||| |||| |||||| |  | | ||||||||||||||    
T  48098543 tacacccctaaaaaataaactcccagtcttaaacaccaaagttgagccacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctct 48098447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 336
Target Start/End: Original strand, 19311075 - 19311204
Alignment:
Q  207 cgtatataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatg 306  Q
    |||| |||||| ||||  |||||| |||||||| ||||||| |||||  ||| |||| |||||||||||||| ||||||||  ||||||| |  |||| |    
T  19311075 cgtaaataggcggaacatccgaaattaaacaccctaaaaactcccctggggataacacccaccaaaatacacgtcaccaccataaacagattccttcacg 19311174  T
Q  307 gaaacgaccactgttaaaaccatatccaac 336  Q
     |||||| |||||| ||||| |||||||||    
T  19311175 aaaacgagcactgtaaaaacgatatccaac 19311204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 458
Target Start/End: Complemental strand, 19673429 - 19673219
Alignment:
Q  251 cctaaggacaacagccaccaaaatacacatcacca---cctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac--cacccatcg 345  Q
    ||||| || |||| ||||||||| |||| ||||||   ||| |||||||| | |||| | ||| ||||||||| ||| | |||||||||  || || |||    
T  19673429 cctaaagataacacccaccaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcg 19673330  T
Q  346 tcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaa 445  Q
    |||||||||||||| ||  | ||||  | ||||||||||| || | ||||| |||||||||  | |||||| ||||||||| |||||||| ||| | ||     
T  19673329 tcactactcacccccaa--agaacactcctcaaaattaaactctcagtcctcaacaccaaagtttagccacatccgaaaagttcatatccaaaatatcat 19673232  T
Q  446 ttagcttccacca 458  Q
    |||||||||||||    
T  19673231 ttagcttccacca 19673219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 35947934 - 35948044
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||| ||||||||||| ||||||  |||| |||||||||| | ||  ||||| ||||||||||||||||||  || | |||||| || |||| |    
T  35947934 aacatcaaatattattaaacaaccagatccttgcttaagacgaacatatactagtgaatctgagaatacaaacaaaagacgccatatataagcggaacac 35948033  T
Q  225 ccgaaaataaa 235  Q
    |||||||||||    
T  35948034 ccgaaaataaa 35948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 12296627 - 12296518
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||| || || ||||||||||||||| ||||| | |||||| |||  | |||||||||||| ||| | | |||||| ||||||||| |    
T  12296627 aacagcaaattttatttaa-aaccagatctctgctcaaaacgaatagagaccgatgattcagagaatacaaactaaatgtgtcgtatacaggcagaacac 12296529  T
Q  225 ccgaaaataaa 235  Q
    || ||||||||    
T  12296528 ccaaaaataaa 12296518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 368
Target Start/End: Original strand, 39420745 - 39420909
Alignment:
Q  207 cgtatataggcagaacccccgaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcat 305  Q
    ||||||||||| |||| ||||||||| |||||| |||||| ||| | | || | |||| |||||||||||||| |||||| ||||||| ||||  | ||     
T  39420745 cgtatataggcggaacacccgaaaatgaacaccataaaaaacactcatgagcataaca-ccaccaaaatacacgtcaccatctaaaactgactcctacac 39420843  T
Q  306 ggaaacgaccactgttaaaaccatatcca--accacccatcgtcactactcac-cccaaagaaaaa 368  Q
    |  ||| ||||| ||  |||| |||||||  ||||||| |||||||||||||| ||||||||||||    
T  39420844 gagaacaaccaccgtataaacgatatccaacaccacccgtcgtcactactcacacccaaagaaaaa 39420909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 20632129 - 20632233
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaac-aaaaagcggcgtatataggcagaacccccga 228  Q
    ||||||||||| || ||||||||  ||||| |||||||||  ||||||||||  | |||||||||||| |||| |||  |||||||||| |||  |||||    
T  20632129 caaattttatttaaaaaacagattcctgcttaagacgaactgagaccggtgattcagagaatacaaactaaaaggcgttgtatataggcggaatacccga 20632228  T
Q  229 aaata 233  Q
    |||||    
T  20632229 aaata 20632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 21983507 - 21983598
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaac 222  Q
    |||||||||||||| || |||||| |||||||||||||||| |||||| |||||  || |||| |||  ||||||| | ||||||||| ||||    
T  21983507 caaattttattaaa-aatcagatccctgctcaagacgaacagagaccgatgaaatagaaaatataaatgaaaagcgccatatataggcggaac 21983598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 43373862 - 43373907
Alignment:
Q  253 taaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    ||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  43373862 taaggacaacacccaccaaaataaacatcaccccctaaaactgact 43373907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 35341177 - 35341209
Alignment:
Q  333 caaccacccatcgtcactactcaccccaaagaa 365  Q
    |||||||||||||||||||||||||||| ||||    
T  35341177 caaccacccatcgtcactactcaccccagagaa 35341209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 43077355 - 43077307
Alignment:
Q  191 tacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacacc 239  Q
    |||||||||||  || |||||||||||||||| || |||||||||||||    
T  43077355 tacaaacaaaatacgtcgtatataggcagaacacctgaaaataaacacc 43077307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 125 - 416
Target Start/End: Original strand, 50518716 - 50519007
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| |||||||||||||||||   |||| |||||||||||||||| |||| ||||||||||||||||||||||||| | | ||||||||||| |||| |    
T  50518716 aacatcaaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacac 50518815  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
    ||||||||||||||| ||||||||||| | ||||| ||| ||| |||||||||| |||||| ||||||||||||  ||||  || || |||||||| |||    
T  50518816 ccgaaaataaacaccctaaaaacacccatgaggaccacacccaacaaaatacacctcaccatctaaaacagactccttca-cgataccaccactgtaaaa 50518914  T
Q  325 accatatccaaccacccatcgtcactactcacc-ccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccac 416  Q
    || ||||| ||| | |||||||||||||||||| ||||||||||||| || | |||| |||||||  |||||||||||||||| |||||||||    
T  50518915 acgatatctaacgatccatcgtcactactcacctccaaagaaaaacacccctaaaaaataaattcctcgtcctgaacaccaaagctgagccac 50519007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 130 - 463
Target Start/End: Complemental strand, 25648132 - 25647800
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    ||||||| ||||||||| |  ||| ||| |||||||||||| ||| |||||||||| ||||||||||||||| |||  |||||||| | |||| ||||||    
T  25648132 caaatttaattaaacaacctaatccctgttcaagacgaacagagatcggtgaaactaagaatacaaacaaaaggcgcagtatatagacggaacacccgaa 25648033  T
Q  230 aataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccat 329  Q
    |||||||||| ||||||||| | | ||||| ||| ||||||||  |||  ||||||| ||||||| |||   |||  ||||| |||||||  ||||| ||    
T  25648032 aataaacaccctaaaaacacacatgaggaccacacccaccaaataacatgtcaccacataaaacatactccatca-cgaaaccaccactg-aaaaacgat 25647935  T
Q  330 atccaaccacccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagct 428  Q
    ||||||||| ||||| |||||||||| ||||||| ||||||| || | |||| |||   |  | |||||| ||||||||||||||||| |||||||||||    
T  25647934 atccaaccatccatcatcactactcacccccaaataaaaacacccctaaaaaataacccccacttcctgagcaccaaaactgagccacgtccgaaaagct 25647835  T
Q  429 catatccgaaagaccaattagcttccaccacctct 463  Q
    |||| |||||||| || | | ||| ||||||||||    
T  25647834 cataaccgaaagatcattcaactttcaccacctct 25647800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 127 - 359
Target Start/End: Complemental strand, 4171196 - 4170963
Alignment:
Q  127 caacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccccc 226  Q
    ||||||||| ||||||||||  | ||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||     
T  4171196 caacaaattctattaaacaactaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 4171097  T
Q  227 gaaaataaacaccttaaaaacacccctaaggacaacagccac-caaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaa 325  Q
    ||||||||||||| |||||||| |  | ||||||||| ||||  |||||| || ||| ||||||||| |||||  |||| | ||| ||||| |||  |||    
T  4171096 gaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatatacgtcatcacctaaaatagactccttcacgaaaatgaccattgtataaa 4170997  T
Q  326 ccatatccaaccacccatcgtcactactcacccc 359  Q
      ||||||||||| ||||||||||||||||||||    
T  4170996 tgatatccaaccatccatcgtcactactcacccc 4170963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 125 - 461
Target Start/End: Complemental strand, 37123824 - 37123497
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||  |||||| ||||||||||||||||||||||| ||| | || |||| | |||| |    
T  37123824 aacaagaaattttattaaacaattaaatctctgctcaagacgaactgagaccgatgaaactgagaatacaaacaaaaggcgtcctacatagtcggaacac 37123725  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
    ||||||||||||||| |  ||           ||||||| |||||||||||||||||||||  ||||| |||||| |||| | ||||||||||||| |||    
T  37123724 ccgaaaataaacacccttgaa-----------gacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaa 37123636  T
Q  325 accatatcca--accacccatcgtcactactcacc-ccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccg 421  Q
    || |||||||  ||||||  | ||||||||||||| |||||||  |||| || || |||||||| || | |||| ||||| |||| ||||||||| | ||    
T  37123635 acgatatccaacaccacctgttgtcactactcaccgccaaagatgaacacccctccaaattaaactctcagtccagaacatcaaagctgagccacat-cg 37123537  T
Q  422 aaaagctcatatccgaaagaccaattagcttccaccacct 461  Q
    |||||||||| || |||||| ||   ||||||||||||||    
T  37123536 aaaagctcatgtctgaaagatcatacagcttccaccacct 37123497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 125 - 367
Target Start/End: Original strand, 33143579 - 33143822
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||||||||| |||||||||||||||| |||||| | | |||||||||||||||||||| ||||| ||| | ||||||||| |||| |    
T  33143579 aacaacaaattttattaaacaaccagatctctgctcaaggcgaacataaatcggtgaaactgagaatacaaccaaaaggcgtcatatataggcggaacac 33143678  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
    ||||||| |||||||  |||||| |||   |||| |||| |||||| || |||| ||||||||||||||| |||  |||| | |||| |||||||   ||    
T  33143679 ccgaaaa-aaacacccaaaaaactcccaagaggataacatccaccataaaacacgtcaccacctaaaacaaactccttcacgaaaaccaccactgaacaa 33143777  T
Q  325 accatatccaa--ccacccatcgtcactactcaccccaaagaaaa 367  Q
    || ||||||||  ||| || ||||||||||||||||  |||||||    
T  33143778 acgatatccaaccccatccgtcgtcactactcacccttaagaaaa 33143822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 126 - 298
Target Start/End: Original strand, 48892981 - 48893153
Alignment:
Q  126 acaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccc 225  Q
    |||| ||||||||||||||||  ||||| ||||||||||||||||||||| | ||||||||||||||||||||||    | |||||||| |  ||||  |    
T  48892981 acaataaattttattaaacaactagatccctgctcaagacgaacaaagacagatgaaactgagaatacaaacaaacgatgccgtatataagaggaacatc 48893080  T
Q  226 cgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    ||||||||||||| |||||||||||||| | ||||||| |||||||||||||  ||||||||||||| |||||    
T  48893081 cgaaaataaacactttaaaaacacccctgaagacaacacccaccaaaatacatgtcaccacctaaaagagact 48893153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 172 - 456
Target Start/End: Complemental strand, 14194337 - 14194054
Alignment:
Q  172 agaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaa 271  Q
    ||||| ||||||||||||| |||||||||| | | | ||||||||| ||||  ||||||||||||| | ||||||||| | | ||||| ||| |||||||    
T  14194337 agaccagtgaaactgagaacacaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcctaaaaacactcatgaggaccacacccaccaa 14194238  T
Q  272 aatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcacccc-aaagaaaaaca 370  Q
    ||||||| |||||||||||||||||||   ||| | || || ||||||  | ||| ||||||||||| |||||||||||||||||||| ||| |||||||    
T  14194237 aatacacgtcaccacctaaaacagactccatcacgaaatcg-ccactg-aataacgatatccaaccatccatcgtcactactcaccccaaaataaaaaca 14194140  T
Q  371 tccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccac 456  Q
     || | |||| |||   |  | ||||||  |||||||||||||||| |||||||||||| || ||||||||| | | |||||||||    
T  14194139 cccttaaaaaataacccccacttcctgagaaccaaaactgagccacgtccgaaaagctcctaaccgaaagacaattcagcttccac 14194054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 300 - 462
Target Start/End: Original strand, 37998964 - 37999125
Alignment:
Q  300 attcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaa 399  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||   ||| ||||||| |||| ||||||||| |  ||||||| ||    
T  37998964 attcatgaaaacgaccactgttaaaacgatatccaaccactcatcgtcaccactcacaaaaaa-aaaaacacccattaaaattaaacttcccgtcctaaa 37999062  T
Q  400 caccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctc 462  Q
    |||||||  ||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||    
T  37999063 caccaaagttgatccacctccaaaaagctcctatccaaaagatcaattagcttccaccacctc 37999125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 131 - 295
Target Start/End: Original strand, 14280182 - 14280345
Alignment:
Q  131 aaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaa 230  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||| || ||||||||| ||||||||  ||| ||| ||||||||||| |||| |||||||    
T  14280182 aaatattattaaacaatcagatctttgctcaagacgaacaaagatcgatgaaactgataatacaaattaaaggcgccgtatataggcggaacacccgaaa 14280281  T
Q  231 ataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacag 295  Q
     |||||||  | |||| |  ||| ||||||||| |||| ||||||||| ||||||||||||||||    
T  14280282 gtaaacactctgaaaata-tcctgaggacaacacccactaaaatacacgtcaccacctaaaacag 14280345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 14893384 - 14893261
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||||||||| |||||  |||||||||| ||||| |||| |||||||| |||| |||||||||||  || ||||||||||| |||| |    
T  14893384 aacaacaaattttattaaacaaccagataactgctcaagatgaacagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacac 14893285  T
Q  225 ccgaaaataaacaccttaaaaaca 248  Q
    | ||||||||||||| ||||||||    
T  14893284 ctgaaaataaacaccctaaaaaca 14893261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 130 - 357
Target Start/End: Original strand, 28937360 - 28937574
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    ||||| |||||||| || |||||||||| |||||||||| | |||||||||||| |||||||||      |||||| |||||||| || |||| ||||||    
T  28937360 caaatattattaaataaccagatctctgttcaagacgaagagagaccggtgaaattgagaatac------aaagcgccgtatataagcggaacacccgaa 28937453  T
Q  230 aataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccat 329  Q
    |||||||||| |||||||||||| || ||||||| ||||||||||        |||||||||||||||   |||| | ||  ||||||||| ||||| ||    
T  28937454 aataaacaccctaaaaacacccc-aatgacaacacccaccaaaat--------ccacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgat 28937544  T
Q  330 atcca--accacccatcgtcactactcacc 357  Q
    |||||  ||||||||||| |||||||||||    
T  28937545 atccaataccacccatcgccactactcacc 28937574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 308 - 463
Target Start/End: Complemental strand, 14879708 - 14879550
Alignment:
Q  308 aaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacacca 404  Q
    ||||||||||||  ||||| |||||||||  ||| ||||||||||| ||||||| ||||||||||| || ||||||||||| || | | | |||||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaaaaacacccctcaaaattaaactcccagacttgaacacca 14879609  T
Q  405 aaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 463  Q
    || | ||||||| |||||||||||| |||| |||||| || | ||||||||||||||||    
T  14879608 aacccgagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctct 14879550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 32010241 - 32010121
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||| ||||| |||||| || ||||||||||||| ||| ||||||  | |||||||||| | ||||||| ||||||||||| |||  |    
T  32010241 aacaacaaattttatttaacaaccagatccctactcaagacgaacagagatcggtgattcagagaatacaacctaaaagcgtcgtatataggcggaatac 32010142  T
Q  225 ccgaaaataaacaccttaaaa 245  Q
    | |||||||||||||||||||    
T  32010141 ctgaaaataaacaccttaaaa 32010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 37998836 - 37998956
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| |||||||||||||||||  | |||  || |||||||||| ||||| | | |||||||||||||||||||||| | | ||||||||||| |||       
T  37998836 aacatcaaattttattaaacaactaaatcattgttcaagacgaataaagatcagcgaaactgagaatacaaacaaaatgtgccgtatataggcggaatgt 37998935  T
Q  225 ccgaaaataaacaccttaaaa 245  Q
    |||||||||||||||||||||    
T  37998936 ccgaaaataaacaccttaaaa 37998956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 254
Target Start/End: Original strand, 46358009 - 46358139
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||| ||||| | ||  | || ||||||||| |||  ||  ||||||||||  ||| |    
T  46358009 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagagattcagaaaatacaaactaaagacgctgtatataggcgaaacac 46358108  T
Q  225 ccgaaaataaacaccttaaaa-acaccccta 254  Q
    | ||||||||||||||||||| |||||||||    
T  46358109 ctgaaaataaacaccttaaaagacaccccta 46358139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 246
Target Start/End: Original strand, 25594142 - 25594256
Alignment:
Q  132 aattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaa 231  Q
    ||||||||| || || |||||| ||||||||||| |||| ||| ||||||  | ||||||| ||| |||| ||| ||||||||||| |||| |||||||     
T  25594142 aattttatttaaaaaccagatcactgctcaagacaaacagagatcggtgattcagagaataaaaataaaatgcgtcgtatataggcggaacacccgaaag 25594241  T
Q  232 taaacaccttaaaaa 246  Q
    |||||||| ||||||    
T  25594242 taaacaccataaaaa 25594256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 366
Target Start/End: Complemental strand, 7105140 - 7105052
Alignment:
Q  280 tcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcca--accacccatcgtcactactcaccccaaagaaa 366  Q
    |||||||||||||||||||| |||| | |||| | |||| | |||||  ||||||  ||||||||||||||||||||||||||||||||    
T  7105140 tcaccacctaaaacagacttcttcaagaaaacaagcactataaaaacagtatccaccaccacccatcgtcactactcaccccaaagaaa 7105052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 336
Target Start/End: Complemental strand, 12086636 - 12086484
Alignment:
Q  186 gagaatacaaacaaaaag-cggcgtatataggcagaacccccgaaaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcac 283  Q
    |||||||||||||||||  |  |||||| |||| ||||   |||||||||||| ||||||| | |||||  | ||| ||| ||||||||||| |||||||    
T  12086636 gagaatacaaacaaaaaaacaccgtataaaggcggaacattcgaaaataaacatcttaaaagataccccctaagaccacacccaccaaaataaacatcac 12086537  T
Q  284 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac 336  Q
    |||||||||||||  |||||| | |||||| |||||| ||||| |||| ||||    
T  12086536 cacctaaaacagatgtattcaagaaaacgatcactgtaaaaacgatattcaac 12086484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 41039611 - 41039463
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| |||||||||| ||||||| ||||| || || || ||||| | ||| | |||||||  || ||||||| |||| ||  | ||||||||| |||| |    
T  41039611 aacagcaaattttatgaaacaaatagatccctacttaaaacgaatagagatcagtgaaaccaagcatacaaagaaaatgcatcatatataggcggaacac 41039512  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaa 273  Q
    | ||||||||||||| ||||||||||| | | ||||||| |||||||||    
T  41039511 cagaaaataaacaccctaaaaacacccgtgaagacaacacccaccaaaa 41039463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 361
Target Start/End: Original strand, 25594296 - 25594412
Alignment:
Q  245 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaa-ccacccat 343  Q
    ||||||| | ||||||||| |||||| |||| ||||||| |||||||||| |||  ||||   ||||||||||||  ||||| |||||||| ||||||||    
T  25594296 aacacccatgaggacaacacccaccacaataaacatcactacctaaaacatactccttcaca-aaacgaccactgaaaaaacgatatccaaaccacccat 25594394  T
Q  344 cgtcactactcaccccaa 361  Q
    || ||||||||| |||||    
T  25594395 cgccactactcatcccaa 25594412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 823029 - 823080
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtga 181  Q
    |||||||||||||| || |||||| |||||||||||||||| ||||||||||    
T  823029 caaattttattaaaaaaccagatcgctgctcaagacgaacagagaccggtga 823080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 463
Target Start/End: Original strand, 39021122 - 39021244
Alignment:
Q  341 catcgtcactactcac-cccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccg-aa 438  Q
    |||||||||||||||| |||||||||| ||   | ||||||| ||| || | ||||| ||||||||| || |||||| |||||||| |||||||||| ||    
T  39021122 catcgtcactactcacacccaaagaaacacg--cgtcaaaatgaaactctcagtcctcaacaccaaagctaagccacatccgaaaaactcatatccgaaa 39021219  T
Q  439 agaccaattagcttccaccacctct 463  Q
    ||| |||| |||| |||||| ||||    
T  39021220 agatcaatcagctaccaccatctct 39021244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 1652646 - 1652692
Alignment:
Q  253 taaggacaacagccaccaaaatacacatcaccacctaaaacagactt 299  Q
    ||||||||||| ||||||||||| |||||||| |||||||| |||||    
T  1652646 taaggacaacacccaccaaaataaacatcaccccctaaaactgactt 1652692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 14754942 - 14755016
Alignment:
Q  157 gctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaa 231  Q
    |||||||||||||||| | | |||||| ||||||||||||| ||| ||| |||| |||||| |||| ||| ||||    
T  14754942 gctcaagacgaacaaatatcagtgaaattgagaatacaaactaaaggcgccgtacataggcggaacaccctaaaa 14755016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 27399278 - 27399228
Alignment:
Q  245 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacag 295  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||||||||    
T  27399278 aacacccatgaggacaacacccaccaaaataaacatcatcacctaaaacag 27399228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 35609052 - 35609123
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaac 197  Q
    ||||||||||||||||||| |  |||||  | ||||||||||||| || |||||||||| |||| ||||||||    
T  35609052 aacaacaaattttattaaatagtcagattccggctcaagacgaac-aataccggtgaaattgagcatacaaac 35609123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 125 - 462
Target Start/End: Complemental strand, 7696415 - 7696077
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||| ||||| || ||| |||||||||| ||||| |||||| ||||| ||||||||||||||||| |   ||||||||||| |||| |    
T  7696415 aacagcaaattttattgaacaaccaaatccctgctcaagatgaacagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacac 7696316  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
    || |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| | |||  |||| | ||||||||| ||| |||    
T  7696315 ccaaaaataaacaccttaaaaacacccccgaggacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaa 7696216  T
Q  325 accatatccaaccacccatcgtcactactcac-cccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaa 423  Q
    |  |||| ||||||| |||||||||||||||| |||  ||||||||| || | ||||| ||| ||   |||||||||||||||  |||||||| |||  |    
T  7696215 atgatattcaaccactcatcgtcactactcactcccttagaaaaacacccctaaaaataaaactcctggtcctgaacaccaaagttgagccacatcctca 7696116  T
Q  424 aagctcatatccgaaagaccaattagcttccaccacctc 462  Q
    || ||| ||||||||||| || | |||||||||||||||    
T  7696115 aatctcctatccgaaagatcattcagcttccaccacctc 7696077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 125 - 463
Target Start/End: Original strand, 10173206 - 10173544
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||| | ||||| |||||  |||||||||||||||| ||| |||||||||  | ||||||||| |||||||  |||||||||| |||| |    
T  10173206 aacatcaaattttacttaacaaccagattcctgctcaagacgaacagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaacac 10173305  T
Q  225 ccgaaaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    | ||||||||||||| ||||| | ||| || ||||||| | ||| |||||||||  ||||  |||||||||||| | |||||| ||||||| ||||| ||    
T  10173306 ctgaaaataaacaccctaaaagatacctctgaggacaatacccatcaaaatacatgtcacggcctaaaacagacgtcttcatgaaaacgactactgtaaa 10173405  T
Q  324 aaccatatcca--accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccg 421  Q
    ||| |||| ||  ||||| ||||||||||||||||||||||||| |   ||| ||||||||||| || | ||||| ||||||||| ||||||||| ||||    
T  10173406 aacgatatacaacaccactcatcgtcactactcaccccaaagaata--ctcc-tcaaaattaaactctcagtcctcaacaccaaagctgagccacatccg 10173502  T
Q  422 aaaagctcatatccgaaagaccaattagcttccaccacctct 463  Q
    |||||||||||| | ||||| || | | ||||||||||||||    
T  10173503 aaaagctcatattcaaaagatcattcaacttccaccacctct 10173544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 125 - 333
Target Start/End: Complemental strand, 4975199 - 4974990
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||| ||| | ||| ||||||||||||||||||| ||||  |||||||| ||||||||||| ||| ||| ||||||||||| |||| |    
T  4975199 aacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacac 4975100  T
Q  225 ccgaaaataaaca-ccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    ||||||||||||| ||| ||||||| || | |||| |||| |||||||| |||||| ||||||||||||||||||| |||| | ||||||||||||| ||    
T  4975099 ccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaa 4975000  T
Q  324 aaccatatcc 333  Q
    ||| ||||||    
T  4974999 aacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 125 - 333
Target Start/End: Complemental strand, 4993107 - 4992898
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||| ||| | ||| ||||||||||||||||||| ||||  |||||||| ||||||||||| ||| ||| ||||||||||| |||| |    
T  4993107 aacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacac 4993008  T
Q  225 ccgaaaataaaca-ccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    ||||||||||||| ||| ||||||| || | |||| |||| |||||||| |||||| ||||||||||||||||||| |||| | ||||||||||||| ||    
T  4993007 ccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaa 4992908  T
Q  324 aaccatatcc 333  Q
    ||| ||||||    
T  4992907 aacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 131 - 463
Target Start/End: Complemental strand, 34230648 - 34230315
Alignment:
Q  131 aaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaa 230  Q
    |||| ||||||||||| || |||||||||||||||||||| ||| ||||||| ||| ||||||||||||||  || ||||||||||| |||| ||  |||    
T  34230648 aaatattattaaacaaccatatctctgctcaagacgaacagagatcggtgaa-ctgcgaatacaaacaaaagacgccgtatataggcggaacaccaaaaa 34230550  T
Q  231 ataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccata 330  Q
    ||||||| | ||||||||||||| || |||||| |||||||||||||| |||||| || |||||||||  | || | ||||||||||| | ||||| |||    
T  34230549 ataaacatcgtaaaaacaccccttagaacaacatccaccaaaatacacgtcaccatct-aaacagactcttccacgaaaacgaccactataaaaacgata 34230451  T
Q  331 tccaac--cacccatcgtcactactcacc-ccaaag-aaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaag 426  Q
    ||||||  ||||| |||  |||||||||| |||||| ||||||| |||| ||||  ||| |  | ||||| |||||||||  |||||||| || ||||||    
T  34230450 tccaacaacacccgtcgcaactactcacctccaaagaaaaaacacccataaaaaaaaaaat-tcagtcctaaacaccaaagttgagccacatctgaaaag 34230352  T
Q  427 ctcatatccgaaagaccaattagcttccaccacctct 463  Q
    ||| |||  |||||| || | ||||||||||||||||    
T  34230351 ctcttatttgaaagatcattcagcttccaccacctct 34230315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 125 - 463
Target Start/End: Original strand, 37770280 - 37770609
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||| ||||   |||||  || ||||||| |||| ||| |||||||  |||||||||||||||   ||| ||||||||||| |||| |    
T  37770280 aacaacaaattttattgaacagctagatccatgatcaagacaaacagagatcggtgaatatgagaatacaaacaa---gcgtcgtatataggcggaacac 37770376  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
    ||||||||||||||| |||||||| || | |||| | || |||||||||| ||| |||||||||||||||||||  |||| | |||| |||||| |  ||    
T  37770377 ccgaaaataaacaccctaaaaaca-ccatgaggataccacccaccaaaatccacgtcaccacctaaaacagactccttcacgaaaaccaccactat--aa 37770473  T
Q  325 accatatccaaccacccatcgtcactactc-accccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaa 423  Q
     |||      ||||||| ||||||||||||  |||||||||||||   || ||||||||||| || | | ||||||||||||| | |||||||||| |||    
T  37770474 tcca----acaccacccgtcgtcactactcgcccccaaagaaaaaaccccctcaaaattaaactcacagacctgaacaccaaagccgagccacctcagaa 37770569  T
Q  424 aagctcatatccgaaagaccaattagcttccaccacctct 463  Q
    ||||||||||| |||||| || | |||||||| |||||||    
T  37770570 aagctcatatctgaaagatcattcagcttccaacacctct 37770609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 125 - 263
Target Start/End: Original strand, 41086431 - 41086569
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||||  |||||||||||  ||| |    
T  41086431 aacaacaaattttgttaaacaactagatctctgctcaagacgaacagagaccagtgaaactgagcatacaaagaaaaagcatcgtatataggcgaaacac 41086530  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaaca 263  Q
    ||||||||||| ||| ||||||||||||| | |||||||    
T  41086531 ccgaaaataaataccctaaaaacacccctgaagacaaca 41086569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 158 - 287
Target Start/End: Complemental strand, 13337671 - 13337542
Alignment:
Q  158 ctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaaacacccctaagg 257  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||  |||| || ||||||||||||| ||||||||||||| |||    
T  13337671 ctcaagacgaacagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaaacacccctgagg 13337572  T
Q  258 acaacagccaccaaaatacacatcaccacc 287  Q
    |||||| ||||  || |||||||| |||||    
T  13337571 acaacacccacttaattacacatcgccacc 13337542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 125 - 284
Target Start/End: Original strand, 29139579 - 29139736
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||| ||||||||||||| ||||||||||||  |||| |||||||||||||||||||||| ||||||| |||| ||| |||||||  |  |||| |    
T  29139579 aacaacaatttttattaaacaaccagatctctgct--agacaaacaaagaccggtgaaactgaggatacaaataaaaggcgtcgtatattagtggaacac 29139676  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcacc 284  Q
     |||||||||| |||||||||||||| || |  |||||| |||||||||||||| |||||    
T  29139677 tcgaaaataaataccttaaaaacacctctgaaaacaacatccaccaaaatacacgtcacc 29139736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 12343146 - 12343037
Alignment:
Q  250 ccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcac 349  Q
    |||| ||||||||| ||| |||||||||| |||||||||||||||||||  |||| | |||||||| |||| ||||| |||||||||||| |||||||||    
T  12343146 ccctgaggacaacatccatcaaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaaccactcatcgtcac 12343047  T
Q  350 tactcacccc 359  Q
    ||||||||||    
T  12343046 tactcacccc 12343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 22884746 - 22884871
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    ||||||||||| || || || |||||||||||||||||||||||||||  || |  |||||||||||| ||| ||| ||||||||||| |||| ||||||    
T  22884746 caaattttatttaaaaaccaaatctctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtatataggcggaacacccgaa 22884845  T
Q  230 aataaacacctta-aaaacaccccta 254  Q
    ||||||| || || ||||||||||||    
T  22884846 aataaactccatacaaaacaccccta 22884871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 33533371 - 33533463
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggc 217  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||| |||| ||||||||| || |||||||||||| ||| | |||||||||    
T  33533371 aacaacaaattttatttaacagccagatctctgctcaagacgaacagagactggtgaaactaaggatacaaacaaaaggcgccatatataggc 33533463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 296
Target Start/End: Complemental strand, 29997399 - 29997228
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||||||||| | | |||||| | |||||||||| |||||| ||||| ||| |||| |||||||| ||  |||||||| || ||||      
T  29997399 aacaacaaattttattaaacaatctggtctctggtaaagacgaacagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatataagcggaacat 29997300  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacaga 296  Q
    ||||||||||||| | ||||| || |||| ||||| ||  | || |||||| || |||||| ||||||||||    
T  29997299 ccgaaaataaacatcctaaaatcatccctgaggaccactcctactaaaatatacgtcaccatctaaaacaga 29997228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 1269787 - 1269696
Alignment:
Q  270 aaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaa 361  Q
    ||||||||||||||||||||||||| | |  |||  |||||||||| || | ||||| ||||||||||||||||||||||||||| ||||||    
T  1269787 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaaccacccatcgtcactactcgccccaa 1269696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 33788253 - 33788362
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||| || || || ||||||||| |||||||||| |||||||||| || |||||||||||| ||| ||| |||||||| || |||| |    
T  33788253 aacagcaaattttatttaa-aaccaaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacac 33788351  T
Q  225 ccgaaaataaa 235  Q
    |||||||||||    
T  33788352 ccgaaaataaa 33788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 10772971 - 10772889
Alignment:
Q  133 attttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatatag 215  Q
    |||||||||||||| |  ||| ||| |||||||||||| |||||| ||||||| ||||||||||||||||| | |||||||||    
T  10772971 attttattaaacaacctaatccctgttcaagacgaacagagaccgatgaaactaagaatacaaacaaaaagtgacgtatatag 10772889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 25504516 - 25504629
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| |||||||||||||| || |||||| ||||||||||| |||| | ||||||||  | |||||||||||||||| ||| ||||||||| |  ||| |    
T  25504516 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 25504614  T
Q  225 ccgaaaataaacacc 239  Q
    || ||||||||||||    
T  25504615 ccaaaaataaacacc 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 463
Target Start/End: Original strand, 16952223 - 16952349
Alignment:
Q  335 accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatc 434  Q
    ||||| ||||||||||||||||||| ||  | |||| || || |||| ||| || | ||||| |||||||||  ||| |||| |||||||||||| ||||    
T  16952223 accactcatcgtcactactcacccccaa--agaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatc 16952320  T
Q  435 cgaaagaccaattagcttccaccacctct 463  Q
    ||||||| |  ||||||||||||||||||    
T  16952321 cgaaagatcgtttagcttccaccacctct 16952349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 463
Target Start/End: Original strand, 17022888 - 17023014
Alignment:
Q  335 accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatc 434  Q
    ||||| ||||||||||||||||||| ||  | |||| || || |||| ||| || | ||||| |||||||||  ||| |||| |||||||||||| ||||    
T  17022888 accactcatcgtcactactcacccccaa--agaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatc 17022985  T
Q  435 cgaaagaccaattagcttccaccacctct 463  Q
    ||||||| |  ||||||||||||||||||    
T  17022986 cgaaagatcgtttagcttccaccacctct 17023014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 463
Target Start/End: Original strand, 17060194 - 17060320
Alignment:
Q  335 accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatc 434  Q
    ||||| ||||||||||||||||||| ||  | |||| || || |||| ||| || | ||||| |||||||||  ||| |||| |||||||||||| ||||    
T  17060194 accactcatcgtcactactcacccccaa--agaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatc 17060291  T
Q  435 cgaaagaccaattagcttccaccacctct 463  Q
    ||||||| |  ||||||||||||||||||    
T  17060292 cgaaagatcgtttagcttccaccacctct 17060320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 42802540 - 42802451
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatata 214  Q
    |||||||||||||||||||||| |  ||| ||  |||||||||||| ||| | |||||||||||||||||||||||| | | ||||||||    
T  42802540 aacaacaaattttattaaacaacctaatccctattcaagacgaacagagatcagtgaaactgagaatacaaacaaaaggtgtcgtatata 42802451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 4472397 - 4472267
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||| ||||| | |||| | | |||||| ||||| ||  ||||||| | |||||||||||| ||| ||| ||||||||| | ||||      
T  4472397 aacagcaaattttattcaacaatctgatccccgttcaagatgaacagagttcggtgaatcagagaatacaaactaaaggcgtcgtatatagacggaacat 4472298  T
Q  225 ccgaaaataaacaccttaaaaa-caccccta 254  Q
    ||||||||||||||| |||||| ||||||||    
T  4472297 ccgaaaataaacaccataaaaatcaccccta 4472267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 27740435 - 27740331
Alignment:
Q  131 aaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaa 230  Q
    |||||||||| || || ||||| ||||||||||||||||||||| || |||  | || ||||||||| ||| ||| ||||||||||  |||| |||||||    
T  27740435 aaattttatttaaaaaccagat-tctgctcaagacgaacaaagatcgatgattcagataatacaaactaaaggcgtcgtatataggtggaacacccgaaa 27740337  T
Q  231 ataaac 236  Q
    ||||||    
T  27740336 ataaac 27740331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 31115187 - 31115244
Alignment:
Q  148 cagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcg 205  Q
    |||||| |||||||||||||| | |||| |||||||||||||||||| ||||||||||    
T  31115187 cagatcactgctcaagacgaatagagacgggtgaaactgagaatacagacaaaaagcg 31115244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 15361175 - 15361088
Alignment:
Q  127 caacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatatag 215  Q
    ||||||||||||||||| || || ||| |||||||||||||| | |||| |||||||| || ||||||||| ||| ||| |||||||||    
T  15361175 caacaaattttattaaa-aatcaaatccctgctcaagacgaatagagactggtgaaacagataatacaaacgaaaggcgccgtatatag 15361088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 1269905 - 1269835
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaa 196  Q
    |||||||||||||||| ||||| || ||||||| |||||||||| | || ||||||||| ||||||||||||    
T  1269905 aacaacaaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaa 1269835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 41113401 - 41113488
Alignment:
Q  159 tcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaaa 246  Q
    |||||||||| | |||||||||||||||||||||||||| |||  |   |||||||||| ||||  ||||||||||| ||| ||||||    
T  41113401 tcaagacgaaaagagaccggtgaaactgagaatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaa 41113488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 7874534 - 7874502
Alignment:
Q  333 caaccacccatcgtcactactcaccccaaagaa 365  Q
    |||||||||||||||||||||||||||||||||    
T  7874534 caaccacccatcgtcactactcaccccaaagaa 7874502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 29487553 - 29487498
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtga 181  Q
    ||||||||||||||||||| || |||||| |||||||||| ||||| ||||||||||    
T  29487553 aacaacaaattttattaaa-aaccagatccctgctcaagatgaacagagaccggtga 29487498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 37559910 - 37559838
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaac 197  Q
    |||||||||||||||| || ||  ||||| ||| | |||||||||| ||| |||||||| |||||||||||||    
T  37559910 aacaacaaattttatttaaaaatgagatccctgtttaagacgaacagagatcggtgaaattgagaatacaaac 37559838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 20572526 - 20572435
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatatagg 216  Q
    |||||||||||||||| || || || |||||| ||||| ||||||| |||||| |||  | ||||||| |||||||| | | ||||||||||    
T  20572526 aacaacaaattttatttaaaaaccacatctctcctcaaaacgaacagagaccgatgattcagagaatagaaacaaaatgtgtcgtatatagg 20572435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 13699051 - 13699100
Alignment:
Q  245 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaaca 294  Q
    ||||||||| | || |||| ||||||||||| ||||||||||||||||||    
T  13699051 aacacccctgaagataacacccaccaaaataaacatcaccacctaaaaca 13699100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 8793571 - 8793515
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtga 181  Q
    |||||| ||||||||| |  || |||||||||||| || ||||||||||||||||||    
T  8793571 aacaacgaattttatttataaaccagatctctgctaaaaacgaacaaagaccggtga 8793515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 25504689 - 25504725
Alignment:
Q  260 aacagccaccaaaatacacatcaccacctaaaacaga 296  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  25504689 aacacccaccaaaataaacatcaccacctaaaacaga 25504725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 125 - 460
Target Start/End: Original strand, 24324425 - 24324761
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    ||||||||||||||||||||||  | || | ||||||||||||| | ||| || ||||| |||||||||||||||||| || | |||||||    ||| |    
T  24324425 aacaacaaattttattaaacaattatatatttgctcaagacgaatagagatcgatgaaagtgagaatacaaacaaaaaacgtcatatatagctgaaacac 24324524  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa-cgaccactgttaa 323  Q
    ||||||||||||||  ||||||||||| | |||||||||  ||||||||||||| ||||||| |||||||||||  |||| | ||| |||||| ||| |     
T  24324525 ccgaaaataaacactctaaaaacacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaag 24324624  T
Q  324 aaccatatccaaccacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccga 422  Q
    ||| ||||||||||||| |||||||||||||||||| ||||||||||| || ||||||| ||| || ||||||||||||||||| |||||||||  ||||    
T  24324625 aacgatatccaaccacc-atcgtcactactcacccctaaagaaaaacacccctcaaaataaaactctccgtcctgaacaccaaagctgagccacagccga 24324723  T
Q  423 aaagctcatatccgaaagaccaattagcttccaccacc 460  Q
    ||||||| || |||||||| || | |||||||||||||    
T  24324724 aaagctcctaaccgaaagatcattcagcttccaccacc 24324761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 125 - 437
Target Start/End: Complemental strand, 1321246 - 1320935
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||||||||| || |||||| ||||||||||||  ||| || ||||||||||||||||||||  |  || ||||||||||| |||| |    
T  1321246 aacaacaaattttattaaacaaccacatctctactcaagacgaacggagatcgatgaaactgagaatacaaacacga--cgccgtatataggcggaactc 1321149  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacaga-cttattcatggaaacgaccactgttaa 323  Q
    ||||||||||||||| ||||||| ||| | | |||| || |||||||||||||||||||||||||||||||| |   |||| | || | |||||||| ||    
T  1321148 ccgaaaataaacaccctaaaaac-cccttgaagacaccatccaccaaaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaa 1321050  T
Q  324 aaccatatcca--accacccatcgtcactactca--ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctc 419  Q
    ||| ||||| |  ||||| |||||||||||||||  ||||||||||||||  || |||||| |||| || | ||| |||| ||||||  |||||||| ||    
T  1321049 aacgatatctaataccactcatcgtcactactcaccccccaaagaaaaac--ccctcaaaactaaactccctgtcatgaa-accaaagttgagccacatc 1320953  T
Q  420 cgaaaagctcatatccga 437  Q
     |||||| || |||||||    
T  1320952 tgaaaagatcttatccga 1320935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 131 - 368
Target Start/End: Complemental strand, 33719413 - 33719174
Alignment:
Q  131 aaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaa 230  Q
    |||||||||||||||| |||||| |||||||||||||||| ||| |||||||||||||||||||||||||  |||  | |||||||| ||| |  |||||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaacggcgctgaatataggcggaa-catcgaaa 33719315  T
Q  231 ataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattca-tggaaacgaccactgttaaaaccat 329  Q
     |||||||| ||||||||| | | ||||||||| ||||||||||||  |||||| |||||||| ||||  ||||    |||||||| |||| ||||  ||    
T  33719314 gtaaacaccctaaaaacactcatgaggacaacacccaccaaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatgat 33719215  T
Q  330 atcca--accacccatcgtcactactcaccccaaagaaaaa 368  Q
    |||||  || || ||||||||||||||||||||||||||||    
T  33719214 atccaacactactcatcgtcactactcaccccaaagaaaaa 33719174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 137 - 293
Target Start/End: Original strand, 16828739 - 16828895
Alignment:
Q  137 tattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaac 236  Q
    |||||||||  | |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||    
T  16828739 tattaaacatgctgatctctgttcaagacaaacaaagaccggtgaaactgagaatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaac 16828838  T
Q  237 accttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaac 293  Q
    | | || ||| |||||| | || |||| |||||||||||||||||| || |||||||    
T  16828839 atcctagaaatacccctgaagaaaacaaccaccaaaatacacatcatcatctaaaac 16828895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 131 - 370
Target Start/End: Original strand, 42532892 - 42533134
Alignment:
Q  131 aaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaa 230  Q
    ||||||||||| |||| || ||| |||||||||||||||| ||||||||| |||||||||||||| ||||| ||| ||||||||||| |||| || | ||    
T  42532892 aaattttattagacaaccaaatccctgctcaagacgaacagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaa 42532991  T
Q  231 ataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccata 330  Q
    ||||||||| ||||||| ||| | | ||||||| |||| |||| | || ||| ||||||||||| || |||||| | || | |||| ||| ||||  | |    
T  42532992 ataaacaccctaaaaactcccttgatgacaacacccacaaaaaaatacgtcatcacctaaaacatacctattcacgaaagcaaccattgtaaaaatgaaa 42533091  T
Q  331 tcca--accacccatcgtcactactc-accccaaagaaaaaca 370  Q
    ||||  ||||||||||||||||||||  |||||||||||||||    
T  42533092 tccaataccacccatcgtcactactcgcccccaaagaaaaaca 42533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 125 - 319
Target Start/End: Complemental strand, 16954942 - 16954749
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||| ||||||||||  |  ||||||| ||||||| ||||||||||||||||||||||| |||||| |||| ||  ||||||||||| ||||      
T  16954942 aacaacaaatattattaaacatcctcatctctgttcaagacaaacaaagaccggtgaaactgaga-tacaaataaaaggcaccgtatataggcggaacat 16954844  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactg 319  Q
    ||||||||||||||  ||||||||||||| | || |||| |||| ||||||||| |||||||||||||||||| | |||| | |||| |||||||    
T  16954843 ccgaaaataaacacgctaaaaacacccctgaagaaaacaaccacaaaaatacacgtcaccacctaaaacagacatcttcaagaaaacaaccactg 16954749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 6726046 - 6726143
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaac 222  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||| ||||    
T  6726046 aacaacaaattttattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaac 6726143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 130 - 470
Target Start/End: Complemental strand, 3478797 - 3478459
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaag-cggcgtatataggcagaacccccga 228  Q
    ||||||||||| ||||| |||||| ||| ||||||| |||| ||||||||||||  |||| | ||| |  |||| || ||||||||||| |||| |||||    
T  3478797 caaattttatttaacaaccagatccctgatcaagacaaacagagaccggtgaaa--gagagtgcaacctgaaaggcgccgtatataggcggaacacccga 3478700  T
Q  229 aaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaacc 327  Q
    ||||||||||| ||||| |||  ||  || |||||| ||||||||| |||  |||||| || |||||||| | |||| | | ||||| ||||| ||| |     
T  3478699 aaataaacaccctaaaagacaatccagagcacaacatccaccaaaaaacaagtcaccaactcaaacagacgtcttcacgaatacgac-actgtaaaagcg 3478601  T
Q  328 atatcca--accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaa 425  Q
    |||||||  |||| || |||||||||||||||||||||||   ||  | ||||||||||| || | ||||| ||||||||| || ||||| ||| |||||    
T  3478600 atatccatcaccaaccgtcgtcactactcaccccaaagaa---cactcctcaaaattaaactcccagtcctcaacaccaaagcttagccaactcagaaaa 3478504  T
Q  426 gctcatatccgaaagaccaattagcttccaccacctctggatctc 470  Q
    | ||| |||||||||| || | ||||||| |||||||| ||||||    
T  3478503 gttcacatccgaaagatcattcagcttccgccacctctcgatctc 3478459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 463
Target Start/End: Complemental strand, 8745426 - 8745267
Alignment:
Q  307 gaaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacacc 403  Q
    |||||||||| ||  ||||| |||||||||  || || ||||||||||||||||| ||||||||||| || ||||||||||| || | ||| ||||||||    
T  8745426 gaaacgaccaatgaaaaaacaatatccaacaccatccttcgtcactactcacccccaaagaaaaacacccctcaaaattaaactcccagtcttgaacacc 8745327  T
Q  404 aaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 463  Q
    ||| ||||||||| |||||||||||| |||| |||||| ||   ||||||||| ||||||    
T  8745326 aaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctct 8745267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 44756021 - 44755908
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||| |||| | |||||||| || |||||||||||| |||  |||||||||| ||| |     
T  44756021 aacaacaaattttattaaacaactagatccctgctcaagacgaacgaagatcagtgaaactaagcatacaaacaaaaggcgttgtatataggc-gaaaca 44755923  T
Q  225 ccgaaaataaacacc 239  Q
    || ||||||||||||    
T  44755922 cctaaaataaacacc 44755908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 47456703 - 47456797
Alignment:
Q  127 caacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaac 222  Q
    ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| || ||||||||  ||| |||  |||||||||| ||||    
T  47456703 caacaaattttattaaa-aaccagatctctgctcaagacgaacagagaccggtgaaacagaaaatacaaatgaaaggcgcagtatataggcggaac 47456797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 22567877 - 22567930
Alignment:
Q  245 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  22567877 aacacccctagggacaacatccaccaaaatacacatcaccacctaaaacagact 22567930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 28534137 - 28534240
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    |||||||||||||| || || |||| ||||||||||||||| ||||||||||    ||||||||||| |||| ||| ||||||||||| |||| ||||||    
T  28534137 caaattttattaaa-aaccaaatctttgctcaagacgaacagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacacccgaa 28534235  T
Q  230 aataa 234  Q
    |||||    
T  28534236 aataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 362
Target Start/End: Complemental strand, 23983528 - 23983420
Alignment:
Q  255 aggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc--aaccacccatcgtcactac 352  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||| ||||| | |||| |||||||  ||||| |||| |  ||| ||||||| |||||||    
T  23983528 aggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaacaaccactg-aaaaacgatatacataactacccatcatcactac 23983430  T
Q  353 tcaccccaaa 362  Q
    ||||||||||    
T  23983429 tcaccccaaa 23983420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 28534276 - 28534349
Alignment:
Q  245 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactg 319  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||  ||||  |||||||||||||    
T  28534276 aacacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttca-cgaaacgaccactg 28534349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 48058306 - 48058405
Alignment:
Q  131 aaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaa 230  Q
    ||||||||||||| || || ||||||||||||||| |||| ||||||||||||  |||||||||||| ||| ||| | ||||||||| |||| ||| |||    
T  48058306 aaattttattaaa-aaccatatctctgctcaagacaaacagagaccggtgaaatagagaatacaaacgaaaggcgtcatatataggcggaacaccctaaa 48058404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 8745583 - 8745477
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||| ||||||||||| || ||| ||  |||||||||||| |||| ||||||||||| |||| |||||| |  || ||||||||||| |||| |    
T  8745583 aacatcaaatattattaaacaatcaaatccctattcaagacgaacagagactggtgaaactgaaaatagaaacaagagacgccgtatataggcggaacac 8745484  T
Q  225 ccgaaaa 231  Q
    |||||||    
T  8745483 ccgaaaa 8745477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 6492859 - 6492931
Alignment:
Q  227 gaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    ||||||||||||| |||||| ||||  | ||||||||| |||||||||| ||| |||||||||||||||||||    
T  6492859 gaaaataaacaccataaaaaacacctatgaggacaacatccaccaaaattcacgtcaccacctaaaacagact 6492931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 463
Target Start/End: Original strand, 6716363 - 6716704
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||| ||| | ||  || ||||||||||| |||  |||| | |||||| |||||||||||  ||| | | ||||||||  | |||| |    
T  6716363 aacatcaaattttatttaaccaccaagtccctgctcaagacaaaccgagacagatgaaacagagaatacaaattaaaggggccgtatataaccggaacac 6716462  T
Q  225 ccgaaaataaacaccttaaaaacacccctaa---ggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgtt 321  Q
    | ||||||||||||| |||||| | | || |   ||| |||| | ||| || ||||   ||||||||||||||  ||  |||| | |||||||||||||     
T  6716463 ctgaaaataaacaccctaaaaaaaacactcacgaggataacaccaacccaagtacatgacaccacctaaaaca--ctccttcacgaaaacgaccactgta 6716560  T
Q  322 aaaaccatatc-ca-accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctc 419  Q
    |||||  |||| || ||||||||| ||||||||||||||| ||  ||| || ||  |||||||||| || |  |||| ||||||||| ||||||||| ||    
T  6716561 aaaacggtatctcacaccacccattgtcactactcacccccaacgaaa-caccccacaaaattaaactcccattcctcaacaccaaagctgagccacatc 6716659  T
Q  420 cgaaaagctcatatccgaaa-gaccaattagcttccaccacctct 463  Q
    || |||  || ||||||||| || |||| ||||||||||||||||    
T  6716660 cggaaaaatcttatccgaaaagatcaatcagcttccaccacctct 6716704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 36674891 - 36674810
Alignment:
Q  158 ctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacacc 239  Q
    ||||||||||||| ||| |||||||| ||   |||||||||||| ||| ||||||||||| |||   |||||||||||||||    
T  36674891 ctcaagacgaacagagatcggtgaaattggagatacaaacaaaaggcgtcgtatataggcggaatatccgaaaataaacacc 36674810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 43235764 - 43235688
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaa 201  Q
    ||||||||||||||||||| || |||||  || ||||||||||||| | | || ||||||||| |||||||| ||||    
T  43235764 aacaacaaattttattaaagaaccagattcctactcaagacgaacataaatcgatgaaactgaaaatacaaataaaa 43235688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 40292637 - 40292691
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtg 180  Q
    ||||||||||||||||||| || |||||| || ||||||||||||| |||||||||    
T  40292637 aacaacaaattttattaaa-aatcagatccctcctcaagacgaacagagaccggtg 40292691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 25438810 - 25438690
Alignment:
Q  127 caacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaa-ctgagaatacaaacaaaaagcggcgtatataggcagaacccc 225  Q
    ||||||||||||||||| || ||||||  | ||||||||||||| | |||| ||||| | | |||||||||| | | ||  ||||||||||| |||| ||    
T  25438810 caacaaattttattaaa-aaccagatccatactcaagacgaacagataccgatgaaaacagcgaatacaaacgatatgccccgtatataggcggaacacc 25438712  T
Q  226 cgaaaa-taaacaccttaaaaa 246  Q
    |||||| |||||||| ||||||    
T  25438711 cgaaaagtaaacaccataaaaa 25438690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 125 - 459
Target Start/End: Complemental strand, 37161 - 36827
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    ||||||||| |||||||||||| | |||| |||||||||||||||| |||||||||||||||| |||||||||||||  ||  |||||||||| ||||      
T  37161 aacaacaaaatttattaaacaacctgatccctgctcaagacgaacagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacat 37062  T
Q  225 ccgaaaataaacacc-ttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    ||||||||||||||| | |||||||||| | ||||| ||| ||| |||||||||| |||||||||||||||||||  ||||  ||||| |||||||| ||    
T  37061 ccgaaaataaacaccataaaaaacacccatgaggaccacacccaacaaaatacacgtcaccacctaaaacagactccttca-cgaaaccaccactgtaaa 36963  T
Q  324 aaccatatccaaccacccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccga 422  Q
    ||| | ||||||||| ||| |||||||||||| ||||||||||||||| || | |||| | ||  | ||||||||||||||||| |||||||||   |||    
T  36962 aacgacatccaaccatccaccgtcactactcacccccaaagaaaaacacccctaaaaaat-aaccccccgtcctgaacaccaaagctgagccacaatcga 36864  T
Q  423 aaagctcatatccgaaagaccaattagcttccaccac 459  Q
    ||||||| || ||||||||||| | | ||||||||||    
T  36863 aaagctcctaaccgaaagaccattcaacttccaccac 36827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 125 - 296
Target Start/End: Original strand, 11439647 - 11439817
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| | ||||||| | ||||      
T  11439647 aacaacaaattttattaaacaaccagatctctgctcaagacgaacaaagatcggtgaaaatgagaatacaaacaaaaggcgacatatatagacggaacat 11439746  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacaga 296  Q
    ||||||||||||||| ||||| | ||||| | ||||||| |||||||||||||| |||||||||||||||||    
T  11439747 ccgaaaataaacaccctaaaatc-cccctgaagacaacatccaccaaaatacacgtcaccacctaaaacaga 11439817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 125 - 463
Target Start/End: Complemental strand, 34775325 - 34774985
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||| ||  | ||| || ||||||||||||||||||||||| | || |||||||||||||| ||| ||| ||||||||||| |||| |    
T  34775325 aacaacaaattttatttaatcatcaggtc-ctgctcaagacgaacaaagaccgataaagctgagaatacaaactaaaggcgccgtatataggcggaacac 34775227  T
Q  225 ccgaaaataaacacctta-aaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    |||||||||||||||||| |||| |||  | ||||||||| |||||||||||||| ||| |||||||||||||||  |||| | ||||||| ||||| ||    
T  34775226 ccgaaaataaacaccttaaaaaataccaatgaggacaacacccaccaaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaa 34775127  T
Q  324 aaccatatcc--aaccacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctcc- 420  Q
    ||| | ||||   || |||| ||||||||||||||||||| |  ||||| || | |||| |||| || |  |||| ||||||||| ||||||||| |||     
T  34775126 aacgaaatcccacactacccgtcgtcactactcaccccaatg--aaacacccgtaaaaaataaactcccaatcctcaacaccaaagctgagccacatccg 34775029  T
Q  421 gaaaagctcatatccgaaa-gaccaattagcttccaccacctct 463  Q
    ||||| ||| |||| ||||  | |||| ||||||||||||||||    
T  34775028 gaaaaactcctatctgaaacaatcaatcagcttccaccacctct 34774985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 137 - 463
Target Start/End: Original strand, 31290660 - 31290986
Alignment:
Q  137 tattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaac 236  Q
    |||||||||| ||||||| | ||||| ||||||| |||| ||||| ||||||||||||||||| | ||    ||| ||| | |||| |||||||||||||    
T  31290660 tattaaacaaccagatctttactcaaaacgaacagagactggtgagactgagaatacaaacaagaggcactatatgtagacggaacacccgaaaataaac 31290759  T
Q  237 accttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac 336  Q
    ||| ||||||||||||| |||||||   ||  || | |||||||||||||||||| ||||||  |||  | ||||||||||||| ||||  ||| |||||    
T  31290760 accataaaaacacccctgaggacaattcccttcata-tacacatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagccaac 31290858  T
Q  337 cacccatcgtcactactcaccc-caaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatcc 435  Q
    || ||||||||||||||||||| |||||||||||| || | |||| ||||     | ||  |||||||||| ||||||||| |||||||||||| |||||    
T  31290859 catccatcgtcactactcaccctcaaagaaaaacacccctaaaaaataaacggctcatctagaacaccaaagctgagccacatccgaaaagctcctatcc 31290958  T
Q  436 gaaagaccaattagcttccaccacctct 463  Q
    |||||| |||  | ||||||||||||||    
T  31290959 gaaagatcaagcaacttccaccacctct 31290986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 125 - 359
Target Start/End: Complemental strand, 32882817 - 32882584
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||||||||| || ||| ||||||||||||||||  ||| ||  || | || ||||||||| ||| ||| |||||||||||||||| |    
T  32882817 aacagcaaattttattaaacaatcacatccctgctcaagacgaaca--gactgg--aatcagaaaatacaaactaaaggcgccgtatataggcagaacac 32882722  T
Q  225 ccgaaaataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    ||||||||||||||| ||||| |||||||  ||||||||| ||||||||||| |||||||| |||||||| ||||  |||| | |||||| |||||| ||    
T  32882721 ccgaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaa 32882622  T
Q  324 aaccatatcca--accacccatcgtcactactcacccc 359  Q
     || |||||||  |||||||||||||||||||||||||    
T  32882621 cacgatatccaacaccacccatcgtcactactcacccc 32882584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 125 - 368
Target Start/End: Complemental strand, 27102636 - 27102401
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||||||||| | | ||||||||||| |||| |    
T  27102636 aacagcaaattttattaaacaaccagatctctgttcaagacgaacaaagactggtgaacctgagaatacaaacaaaaggtgccgtatataggcggaacac 27102537  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaa 324  Q
    ||||||||||||||| |||||||| || | ||||||||| ||||||||||         | |||||||||||    |||| | ||||  ||||||| |||    
T  27102536 ccgaaaataaacaccctaaaaaca-ccatgaggacaacacccaccaaaat---------cccctaaaacagatactttcacgaaaacagccactgtaaaa 27102447  T
Q  325 accatatcca--accacccatcgtcactactcaccccaaagaaaaa 368  Q
    || | |||||  ||||| ||||||||||||||||||||||||||||    
T  27102446 acgaaatccaacaccactcatcgtcactactcaccccaaagaaaaa 27102401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 125 - 253
Target Start/End: Original strand, 9312967 - 9313095
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| | ||||||| ||||| ||| ||||||||||| |||| |    
T  9312967 aacaacaaattttattaaacaacgagatctctgctcaagacgaacagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaacac 9313066  T
Q  225 ccgaaaataaacaccttaaaaacacccct 253  Q
    ||||||||||||||| |||||||||||||    
T  9313067 ccgaaaataaacaccctaaaaacacccct 9313095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 125 - 355
Target Start/End: Original strand, 10785088 - 10785319
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||| ||| ||||| |||||| |||||||||||||| | |||| ||| ||||||||||||||||| |||| || |||| | || | |||| |    
T  10785088 aacatcaaatttcatttaacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaatacaaactaaaaacgccgtacaaagtcggaacac 10785187  T
Q  225 ccgaaaataaacacctt-aaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    || || ||||||||||| |||||||||| | ||||||||| ||| |||||||||  | | ||| |||||||||||  |||| | |||||||  |||  ||    
T  10785188 ccaaatataaacaccttaaaaaacacccttgaggacaacacccatcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaa 10785287  T
Q  324 aaccatatccaaccacccatcgtcactactca 355  Q
    ||| ||||||||||||||||||||||||||||    
T  10785288 aacgatatccaaccacccatcgtcactactca 10785319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 130 - 419
Target Start/End: Complemental strand, 46768626 - 46768340
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggc-gtatataggcagaacccccga 228  Q
    ||||||||||||||||| || ||   ||||||||||||||| |||  ||||||| |||| |||||||||||| ||| | |||| ||||| |||| |||||    
T  46768626 caaattttattaaacaaccaaattcttgctcaagacgaacagagattggtgaaattgagcatacaaacaaaaggcgcccgtatgtaggcggaacacccga 46768527  T
Q  229 aaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaacc 327  Q
    ||||||||||| |||||| ||||||  ||||||||| |||||||||| ||| |||||||||||||||||||  |||| | ||||||||||        |     
T  46768526 aaataaacaccctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaacgaccac--------cg 46768435  T
Q  328 atatcca--accacccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctc 419  Q
    |||||||  ||  ||||||||||||||||| ||||||||||||| | || |||| | |||| || |  |||||||||||||| || |||||||||    
T  46768434 atatccaacactgcccatcgtcactactcacccccaaagaaaaaaaaccctcaagactaaactcccaatcctgaacaccaaagctaagccacctc 46768340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 125 - 251
Target Start/End: Complemental strand, 4431129 - 4431003
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| |||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||||||||| ||| |||||| |||| | | |     
T  4431129 aacagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaatacaaacaaaaggcgccgtataaaggcgggaaca 4431030  T
Q  225 ccgaaaataaacaccttaaaaacaccc 251  Q
    || ||||  |||||| |||||||||||    
T  4431029 cctaaaaataacaccctaaaaacaccc 4431003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 9557362 - 9557241
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacg-aacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacc 223  Q
    ||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||| |  ||||||||  |  |||     
T  9557362 aacaacaaattttgttaaacaaccagatctctgctcaagacgaaacagagaccggtgaatctgagaatacaaataaaaaacatcgtatataaacgaaaca 9557263  T
Q  224 cccgaaaataaacaccttaaaa 245  Q
    ||||||||||||||||||||||    
T  9557262 cccgaaaataaacaccttaaaa 9557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 7451888 - 7451962
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaa 199  Q
    |||| ||||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7451888 aacagcaaatattattaaacaactagatctctgctcaagacgaacagagaccggtgaaactgagaatacaaacaa 7451962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 319
Target Start/End: Complemental strand, 46603810 - 46603623
Alignment:
Q  129 acaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccga 228  Q
    ||||||||||||||| ||  ||||| || ||||||||||| |||||||||||   | || |||||||||||||  ||  |||||||||| |||| |||||    
T  46603810 acaaattttattaaa-aatgagatccctactcaagacgaataaagaccggtggttcagataatacaaacaaaagacgttgtatataggcggaacacccga 46603712  T
Q  229 aaat-aaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactg 319  Q
    |||| ||||| | | |||| |||||| | ||||||| ||||||||||| | ||||||| ||||||||||||| ||||  |||||||||||||    
T  46603711 aaataaaacatcat-aaaagacccctgaagacaacacccaccaaaata-aaatcaccatctaaaacagacttcttca-cgaaacgaccactg 46603623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 207 - 359
Target Start/End: Complemental strand, 16149148 - 16148993
Alignment:
Q  207 cgtatataggcagaacccccgaaaataaacaccttaaaa-acacccctaaggacaacagccacc-aaaatacacatcaccacctaaaacagacttattca 304  Q
    ||||||||||| |||| | |||||||||||||| ||||| ||| || | ||||||| ||||  | ||||||||| ||||||||||||||||||   ||||    
T  16149148 cgtatataggcggaacacgcgaaaataaacaccctaaaagacaaccttgaggacaaaagcccgctaaaatacacgtcaccacctaaaacagacaccttca 16149049  T
Q  305 tggaaacgaccactgttaaaaccatatcc--aaccacccatcgtcactactcacccc 359  Q
    || ||||||| ||||  ||||| ||||||  || |||||||||||||||||||||||    
T  16149048 tgtaaacgactactg-aaaaacgatatccaaaagcacccatcgtcactactcacccc 16148993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 376463 - 376547
Alignment:
Q  155 ctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacacc 239  Q
    |||||||||||||||| |||| | |||||| |||||||||||  ||| ||| |||||||||||||||| || |||||||||||||    
T  376463 ctgctcaagacgaacagagacggatgaaacagagaatacaaagtaaaggcgccgtatataggcagaacacctgaaaataaacacc 376547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 32863225 - 32863345
Alignment:
Q  177 ggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacacc-ttaaaaacacccctaaggacaacagccaccaaaata 275  Q
    ||||||| ||||||||||||| ||| | | ||||||||||| |||| || |||||||||||||   ||||||||||   ||||||||| ||||||| |||    
T  32863225 ggtgaaaatgagaatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacaccaagaaaaacacccaagaggacaacacccaccaacata 32863324  T
Q  276 cacatcaccacctaaaacaga 296  Q
    ||| ||||| |||||||||||    
T  32863325 cacgtcaccgcctaaaacaga 32863345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 363
Target Start/End: Original strand, 38548821 - 38548942
Alignment:
Q  242 aaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc--aaccac 339  Q
    |||||||| | ||||| ||||| ||||||||||| ||||||||||||||||||||||  ||||  ||||||| |||||  ||||| |||| |  ||||||    
T  38548821 aaaaacactcataagggcaacatccaccaaaataaacatcaccacctaaaacagactctttca-cgaaacgatcactg-aaaaacgatattcataaccac 38548918  T
Q  340 ccatcgtcactactcaccccaaag 363  Q
    |||||||||||||||| |||||||    
T  38548919 ccatcgtcactactcatcccaaag 38548942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 17034045 - 17033939
Alignment:
Q  127 caacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccccc 226  Q
    |||||||||||| |||| || || |||| ||||||||| ||||| ||||||||||  | || ||||||||||||| ||| |||||||| || |||| |||    
T  17034045 caacaaattttagtaaa-aaccaaatctatgctcaagatgaacatagaccggtgattcagataatacaaacaaaaggcgtcgtatataagcggaacaccc 17033947  T
Q  227 gaaaataa 234  Q
    ||||||||    
T  17033946 gaaaataa 17033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 27905885 - 27905794
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatatagg 216  Q
    ||||||||| |||||||||||| |||||| |||||||||| ||| | ||||||||||| | |||| ||||||| | | ||| ||||||||||    
T  27905885 aacaacaaaatttattaaacaaccagatccctgctcaagaagaatagagaccggtgaatcagagactacaaactagaggcgtcgtatatagg 27905794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 52278717 - 52278589
Alignment:
Q  142 aacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacacctt 241  Q
    ||||| |||||| |||||||||||||||| |||| | |||||| |||||||||| | ||  ||| | ||||||||| |||| || |||||||||||||||    
T  52278717 aacaaccagatccctgctcaagacgaacagagactg-tgaaacagagaatacaagctaag-gcgccatatataggcggaacacctgaaaataaacacctt 52278620  T
Q  242 aaaaacacccctaaggacaacagccaccaaaa 273  Q
    ||| ||||| |  ||||||||| |||||||||    
T  52278619 aaagacaccac-gaggacaacacccaccaaaa 52278589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 425
Target Start/End: Original strand, 9313121 - 9313236
Alignment:
Q  313 accactgttaaaaccatatccaa--ccacccatcgtcactactcacccc--aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaac 408  Q
    |||| ||||||||| ||||||||  |||| ||||||| ||| |||||||  ||||||||||| || ||||||||||| || | |||||||| |||||| |    
T  9313121 accattgttaaaacgatatccaataccactcatcgtcgctaatcacccccaaaagaaaaacacccttcaaaattaaactcccagtcctgaa-accaaagc 9313219  T
Q  409 tgagccacctccgaaaa 425  Q
    |||||||| ||||||||    
T  9313220 tgagccacatccgaaaa 9313236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 41126108 - 41126190
Alignment:
Q  155 ctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaaca 237  Q
    |||||||||||||||| |||||| |||  | |||||||||||| ||| ||  |||||||||| ||||| ||||||||||||||    
T  41126108 ctgctcaagacgaacagagaccgatgattcagagaatacaaactaaaggcatcgtatataggtagaacacccgaaaataaaca 41126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 359
Target Start/End: Original strand, 41126261 - 41126353
Alignment:
Q  269 caaaatacacatcaccacctaaaacagacttattcatggaaac-gaccactgttaaaaccatatcca--accacccatcgtcactactcacccc 359  Q
    ||||||||| |||||||||||||||||||  ||||| | ||||  ||||||| |||||| |||||||  |||||||||||||||||||||||||    
T  41126261 caaaatacatatcaccacctaaaacagacgcattcacgaaaacaaaccactg-taaaacgatatccatcaccacccatcgtcactactcacccc 41126353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 463
Target Start/End: Original strand, 6583118 - 6583183
Alignment:
Q  398 aacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 463  Q
    ||||||||| ||||||| | |||||||||||| |||| |||||| |||| ||||||||||||||||    
T  6583118 aacaccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctct 6583183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 6582972 - 6583052
Alignment:
Q  219 gaacccccgaaaataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    |||| |||||||||||||||| |||||| ||| | | | || |||| |||||||||||||| |||||||||||||||||||    
T  6582972 gaacacccgaaaataaacaccataaaaaacactcatgatgataacacccaccaaaatacacgtcaccacctaaaacagact 6583052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 37200565 - 37200485
Alignment:
Q  156 tgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaac 236  Q
    ||||||||||||||| |||||||||| || |||||||||||| |||  |  ||||||||||| ||||  ||||||||||||    
T  37200565 tgctcaagacgaacagagaccggtgataccgagaatacaaactaaagacatcgtatataggcggaacatccgaaaataaac 37200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 361
Target Start/End: Original strand, 38544503 - 38544619
Alignment:
Q  245 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc--aaccaccca 342  Q
    ||||||| | |||||||||  |||||||||| ||||||||||||||||||||||  |||| || || || |||||  ||||| ||||||  |||||| ||    
T  38544503 aacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcacgg-aatgatcactg-gaaaacgatatccataaccactca 38544600  T
Q  343 tcgtcactactcaccccaa 361  Q
    ||||||||||||| |||||    
T  38544601 tcgtcactactcatcccaa 38544619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 10605144 - 10605082
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaata 192  Q
    ||||||||||| ||||| |||||| |||||||||||||| | |||| |||||||| |||||||    
T  10605144 caaattttatttaacaatcagatccctgctcaagacgaatagagactggtgaaacagagaata 10605082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 49820605 - 49820488
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaac-ccccga 228  Q
    ||||||||||| ||||| | ||||||||||||||||  | | ||| ||||||| | |||||||||||| |||  || | ||| ||||| |||| ||| ||    
T  49820605 caaattttatttaacaatctgatctctgctcaagacagatagagatcggtgaatcagagaatacaaaccaaagacgtcatatgtaggcggaacacccgga 49820506  T
Q  229 aaataaacaccttaaaaa 246  Q
    ||||||||||| ||||||    
T  49820505 aaataaacaccataaaaa 49820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 50588909 - 50589014
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    |||||||||||||| ||  |||||||||||||||||||| ||||| |||||||||     |||||||| ||| ||| ||||||||||| |||| || |||    
T  50588909 caaattttattaaa-aactagatctctgctcaagacgaataaagatcggtgaaac----gatacaaacgaaaggcgccgtatataggcggaacacctgaa 50589003  T
Q  230 -aataaacacc 239  Q
     ||||||||||    
T  50589004 gaataaacacc 50589014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 16147736 - 16147672
Alignment:
Q  399 acaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 463  Q
    |||||||| ||||||||| ||||||||||||||||| |||||| || | | ||| ||||||||||    
T  16147736 acaccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctct 16147672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 38544375 - 38544463
Alignment:
Q  157 gctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaa 245  Q
    |||||||||||||||||| | ||||  | |||||||||||| |||  || |||||||| |  |||| |||||||||||||||| |||||    
T  38544375 gctcaagacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 38544463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 16577579 - 16577520
Alignment:
Q  259 caacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccact 318  Q
    ||||| ||||||||||| |||||| |||||||||||||||  |||| | |||||||||||    
T  16577579 caacacccaccaaaataaacatcatcacctaaaacagactctttcacgaaaacgaccact 16577520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 47295356 - 47295443
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaac 222  Q
    |||||||||||||| ||  | |||||||||||||||||||||||||| |||||||     || ||||| ||| ||| ||||||||||||||||    
T  47295356 caaattttattaaa-aactatatctctgctcaagacgaacaaagaccagtgaaac----gatgcaaacgaaaggcgccgtatataggcagaac 47295443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 12636086 - 12636156
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaa 195  Q
    |||||||||||||||| ||| | | | || || ||||||||||||| |||||||| ||||||| |||||||    
T  12636086 aacaacaaattttatttaactatcgggtccctactcaagacgaacagagaccggtaaaactgataatacaa 12636156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 19599098 - 19598990
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||   | |||| | ||||||||  |||| ||| ||||||||||| |||| || |||    
T  19599098 caaaatttattaaa-aaccagatctctgctcaagacgaacaaagactaataaaac-gggaatacaataaaaaggcgccgtatataggcggaacacctgaa 19599001  T
Q  230 aa-taaacacc 239  Q
    || ||||||||    
T  19599000 aagtaaacacc 19598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 26602452 - 26602528
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaag 203  Q
    ||||||||||||||||||| || | |||| ||||||||||| |||| ||||||||||  | ||||| ||||||||||||    
T  26602452 aacaacaaattttattaaa-aacccgatc-ctgctcaagaccaacagagaccggtgattcggagaaaacaaacaaaaag 26602528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 38546841 - 38546931
Alignment:
Q  156 tgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaaa 246  Q
    ||||||||||||||||||| | ||||  | |||| ||||||| ||| | | ||||||||||| ||||  ||||||||||| ||| ||||||    
T  38546841 tgctcaagacgaacaaagatcagtgattcagagagtacaaactaaatgtgtcgtatataggcggaacatccgaaaataaaaaccataaaaa 38546931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 406
Target Start/End: Complemental strand, 4430962 - 4430862
Alignment:
Q  308 aaacgaccactgttaaaaccatatccaa--ccacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaa 405  Q
    |||| ||||| || ||||| ||||||||  ||| || ||||| |||||||||||||||||||||| || || |||||||| || | | ||||| ||||||    
T  4430962 aaacaaccaccgtaaaaacgatatccaaaaccatccgtcgtcgctactcaccccaaagaaaaacacccctccaaattaaactccctggcctgagcaccaa 4430863  T
Q  406 a 406  Q
    |    
T  4430862 a 4430862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 34159097 - 34159057
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagac 165  Q
    ||||||||| |||||||||||| |||||| |||||||||||    
T  34159097 aacaacaaaatttattaaacaatcagatccctgctcaagac 34159057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 148 - 441
Target Start/End: Complemental strand, 58559 - 58263
Alignment:
Q  148 cagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaaac 247  Q
    |||||| |||||||||||||| | ||||||||||||| || |||| |||||||| ||| |||||||||| ||||| ||| |||||||| ||| |||||||    
T  58559 cagatccctgctcaagacgaaaagagaccggtgaaacagataatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccctaaaaac 58460  T
Q  248 acccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcca--accacccatcg 345  Q
    |||| | || ||| || |  ||||| |||||||||||||| ||||||||||  |||| | ||||||||| ||| |||   |||||||  || |||| |||    
T  58459 acccatgagaacaccatcagccaaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcg 58360  T
Q  346 tcactactcac-cccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaaga 441  Q
    ||||||||||| ||||||||| ||||  | ||||||||||| || | |||| |||||||||| ||||||||| | |||||||||| |||||||||||    
T  58359 tcactactcacacccaaagaacaacactcctcaaaattaaactctcagtcccgaacaccaaagctgagccacattcgaaaagctcttatccgaaaga 58263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 125 - 426
Target Start/End: Original strand, 10248192 - 10248497
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||| ||| | ||| ||   |||||||||||||  | | |  ||||||||||||||||| | ||| ||| ||||||||||| |||| |    
T  10248192 aacaacaaattttatttaaccatcaggtccgggctcaagacgaactgaaatcattgaaactgagaatacaacctaaaggcgtcgtatataggcggaacac 10248291  T
Q  225 ccgaaaataaa-caccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgtta 322  Q
    || |||| ||| ||||||||||| ||||| | ||||||||| || ||||||||||| ||||||||||||||| |||  |||| | ||||||||||||| |    
T  10248292 cctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgccaaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaa 10248391  T
Q  323 aaaccatatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctcc 420  Q
    |||| | |||| ||  |||||||||||||||||||||||  |   ||||| || ||||||||||| ||   ||||| |||||||||  |||||||| |||    
T  10248392 aaacgacatcccacaacacccatcgtcactactcaccccccaacgaaacacccgtcaaaattaaactctaagtcctcaacaccaaagttgagccacatcc 10248491  T
Q  421 gaaaag 426  Q
    ||||||    
T  10248492 gaaaag 10248497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 125 - 359
Target Start/End: Original strand, 17656363 - 17656600
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||| ||||||||||||||||| ||| || ||||||| ||  || | |||||||||||| |||  ||| |||||||| ||| ||||||||| | |||| |    
T  17656363 aacagcaaattttattaaacaatcaggtccctgctcatgagcaatagagaccggtgaaattgaacatataaacaaaaggcgtcgtatatagacggaacac 17656462  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatg-gaaacgaccactgttaa 323  Q
    |||||||| |||||| ||||||||||| | ||||||||| |||||||||| ||| |||||| ||||||||||||  |||| |  ||||||||||||  ||    
T  17656463 ccgaaaattaacaccctaaaaacacccttgaggacaacacccaccaaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaa 17656562  T
Q  324 aaccatatcca--accacccatcgtcactactcacccc 359  Q
    ||| |||||||  ||| | ||| |||||||||||||||    
T  17656563 aacgatatccaacaccgctcattgtcactactcacccc 17656600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 131 - 368
Target Start/End: Original strand, 12197708 - 12197948
Alignment:
Q  131 aaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaa 230  Q
    |||||||||| |||||  |||||| ||||||||||||| | ||| ||||||| | |||||||||||| ||| ||| ||| ||||||| |||| |  ||||    
T  12197708 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaa 12197807  T
Q  231 ataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccat 329  Q
    ||||||||| ||||| ||||| ||  |||||||| |||| ||||||||| |||||||||| |||||||   |||||| | |||||||||   ||||| ||    
T  12197808 ataaacaccctaaaagacacctctggggacaaca-ccacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgat 12197906  T
Q  330 atcca--accacccatcgtcactactca-ccccaaagaaaaa 368  Q
    |||||  ||||||| ||||||||||||| |||||||||||||    
T  12197907 atccagcaccacccgtcgtcactactcacccccaaagaaaaa 12197948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 131 - 368
Target Start/End: Original strand, 12442136 - 12442376
Alignment:
Q  131 aaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaa 230  Q
    |||||||||| |||||  |||||| ||||||||||||| | ||| ||||||| | |||||||||||| ||| ||| ||| ||||||| |||| |  ||||    
T  12442136 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaa 12442235  T
Q  231 ataaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccat 329  Q
    ||||||||| ||||| ||||| ||  |||||||| |||| ||||||||| |||||||||| |||||||   |||||| | |||||||||   ||||| ||    
T  12442236 ataaacaccctaaaagacacctctggggacaaca-ccacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgat 12442334  T
Q  330 atcca--accacccatcgtcactactca-ccccaaagaaaaa 368  Q
    |||||  ||||||| ||||||||||||| |||||||||||||    
T  12442335 atccagcaccacccgtcgtcactactcacccccaaagaaaaa 12442376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 125 - 370
Target Start/End: Original strand, 8862251 - 8862499
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||| ||| ||| |||||| || |||||||||||||| || |||||||  ||||| ||||||||||| ||| ||||||||| | ||||      
T  8862251 aacaacaaattttactaagcaaccagatccctactcaagacgaacaa-gatcggtgaa--tgagagtacaaacaaaaggcgccgtatatagacggaacat 8862347  T
Q  225 ccgaaaa-taaacaccttaaaa-acacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgtta 322  Q
    ||||||| |||||||| ||||| ||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||  | || |  ||| |||| ||| |    
T  8862348 ccgaaaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtcaccacctaaaactgactcttacacgagaacaaccattgtaa 8862447  T
Q  323 aaaccatatcca---accacccatcgtcactactcac-cccaaagaaaaaca 370  Q
    |||| |||||||   ||||| | ||||||||||| || ||||||||||||||    
T  8862448 aaacaatatccaaacaccacacgtcgtcactactgactcccaaagaaaaaca 8862499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 359
Target Start/End: Original strand, 22325734 - 22325957
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaac-aaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccga 228  Q
    |||||||||||||| || |||||| ||||||||||||||  |||||||| |||      ||||||||| |||| | | | ||||||||| ||||   | |    
T  22325734 caaattttattaaataaccagatcgctgctcaagacgaaataaagaccgatga------gaatacaaataaaatgtgtcatatataggctgaacatgc-a 22325826  T
Q  229 aaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaacca 328  Q
    ||||||||| | ||||||||||| ||| ||| ||| ||||||||||| |  ||||||  |||||||||||  || |   ||||||||| ||| ||||| |    
T  22325827 aaataaacatcctaaaaacacccataatgacgacacccaccaaaatataggtcaccatataaaacagactccttaacaaaaacgaccattgtaaaaacga 22325926  T
Q  329 tatccaaccacccatcgtcactactcacccc 359  Q
    ||||| |||| |||||||| | |||||||||    
T  22325927 tatccgaccatccatcgtcgccactcacccc 22325957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 8843746 - 8843831
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggc 217  Q
    |||||||||||||| || || ||| || ||||||||||||| ||||||||||||| || ||||||||| ||| ||| |||||||||||    
T  8843746 caaattttattaaa-aatcaaatcccttctcaagacgaacagagaccggtgaaacaga-aatacaaacgaaatgcgccgtatataggc 8843831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 43312282 - 43312348
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaat 191  Q
    |||||||||||||||| ||| | | | ||||||||||||||||| | |||||| |||||||||||||    
T  43312282 aacaacaaattttatttaaccacctggtctctgctcaagacgaatagagaccgatgaaactgagaat 43312348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 461
Target Start/End: Original strand, 17656872 - 17656967
Alignment:
Q  366 aaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacct 461  Q
    ||||| || ||||||||||| || |  || |||||||||||  ||||||||||| ||||||||| |||  |||||| || | ||||||||||||||    
T  17656872 aaacacccctcaaaattaaactcccaatcatgaacaccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacct 17656967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 458
Target Start/End: Original strand, 8862505 - 8862563
Alignment:
Q  400 caccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccacca 458  Q
    ||||||| ||||||||| || |||||| |||||||||||||| || | |||||||||||    
T  8862505 caccaaagctgagccacatctgaaaagttcatatccgaaagatcattcagcttccacca 8862563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 30235879 - 30235932
Alignment:
Q  245 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    |||||||  |||||||||| ||||||||||| |||||||| |||||||| ||||    
T  30235879 aacacccaaaaggacaacacccaccaaaataaacatcaccccctaaaactgact 30235932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 25184917 - 25184953
Alignment:
Q  255 aggacaacagccaccaaaatacacatcaccacctaaa 291  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  25184917 aggacaacacccaccaaaataaacatcaccacctaaa 25184953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 41790977 - 41791069
Alignment:
Q  207 cgtatataggcagaacccccgaaaataaacacct-taaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    ||||||||||| |||| ||| ||||||||  ||  |||| |||| | ||||||||||  ||||||||||| |||||||| |||||||| ||||    
T  41790977 cgtatataggcggaacacccaaaaataaaacccaataaagacactcataaggacaacccccaccaaaataaacatcaccccctaaaactgact 41791069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 129 - 463
Target Start/End: Original strand, 20701429 - 20701770
Alignment:
Q  129 acaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccga 228  Q
    |||||||||||||||||| || ||| || ||||||||||||| ||| |||||||||||||||||||||||||| |||  |||||||||| |||| || |     
T  20701429 acaaattttattaaacaaccaaatccct-ctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaggcgctgtatataggcggaacacctgg 20701527  T
Q  229 aaataaacaccttaaaaacacccctaaggacaacagccaccaa-----aatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaa 323  Q
    ||||||||||  | |||||||||   ||||||||| ||| |||     || |||| |||||||||| |||||||  ||||| | || | |||||||| ||    
T  20701528 aaataaacacact-aaaacacccacgaggacaacacccatcaaaccctaaaacacttcaccacctataacagacccattcacgaaagcaaccactgtaaa 20701626  T
Q  324 aaccatatcca--accacccatcgtcactactcacccc--aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctc 419  Q
    ||| |||||||  || ||||||||||||||||||||||  ||| ||||||| || | ||||  ||| ||   ||| |||||| ||||  |||||||| |     
T  20701627 aacgatatccaatactacccatcgtcactactcacccccaaaaaaaaaacaccctttaaaaacaaactcctagtcttgaacaacaaagttgagccacatt 20701726  T
Q  420 cgaaaagctcatatccgaaagaccaattagcttccaccacctct 463  Q
    |||||||||| ||||||||||| || | ||||||||| ||||||    
T  20701727 cgaaaagctcctatccgaaagatcattcagcttccactacctct 20701770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 125 - 441
Target Start/End: Original strand, 3880239 - 3880543
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |   |||||||| || |||| |    
T  3880239 aacaacaaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaatacaaacaaaaggttccgtatataagcggaacac 3880338  T
Q  225 ccgaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaa-cgaccactgttaa 323  Q
    |  |||||||||||| ||||||||| ||| ||||||                 | ||||||||||||||| |||| ||   | ||| |||||||| | ||    
T  3880339 caaaaaataaacaccctaaaaacactccttaggaca-----------------cgtcaccacctaaaacaaacttttttccgaaaaacgaccactataaa 3880421  T
Q  324 aaccatatccaac--cacccatcgtcactactcacccc--aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctc 419  Q
    ||| |||||||||  || |  |||||||||||||||||  ||  ||||||| || ||||||||||| ||   ||| ||||||||||| ||||||||| ||    
T  3880422 aacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaacacccctcaaaattaaactccaagtcttgaacaccaaagctgagccacatc 3880521  T
Q  420 cgaaaagctcatatccgaaaga 441  Q
    | ||||||||||||||||||||    
T  3880522 caaaaagctcatatccgaaaga 3880543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 131 - 304
Target Start/End: Original strand, 15120235 - 15120409
Alignment:
Q  131 aaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaa 230  Q
    |||||||||| ||||| | |||| ||| ||||| | |||| |||||||| ||||||||||||||||| |||  || ||||| ||||||||||  | || |    
T  15120235 aaattttatttaacaaccggatccctggtcaagtcaaacagagaccggtaaaactgagaatacaaactaaagacgacgtatgtaggcagaacatctgaca 15120334  T
Q  231 ataaacaccttaaaaa-cacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattca 304  Q
    ||||||||| |||||| || || | ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  15120335 ataaacaccctaaaaaacatccatgaggacaacatccaccaaaatacacatcaccacctaaaacagactcattca 15120409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 133 - 294
Target Start/End: Complemental strand, 6860479 - 6860317
Alignment:
Q  133 attttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatata--ggcagaacccccgaaa 230  Q
    ||||||||||||||  ||||| |||||||||| ||| | ||| |||||||||| |||||||||||||||  || ||||||||  ||| |||| ||| |||    
T  6860479 attttattaaacaactagatccctgctcaagatgaatatagatcggtgaaactaagaatacaaacaaaagacgccgtatataggggcggaacacccaaaa 6860380  T
Q  231 ataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaaca 294  Q
    ||||||||| ||||||||||  |  |||||||  |||| ||||||||| ||| |||||||||||    
T  6860379 ataaacaccctaaaaacacctatgcggacaac-cccacaaaaatacacgtcatcacctaaaaca 6860317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 17278094 - 17278201
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaa 229  Q
    ||||||||||| || || |||||| ||||| |||| ||||| ||||||||||  | |||||||||| | ||| ||| ||||||||||| |||| ||||||    
T  17278094 caaattttatttaaaaaccagatcgctgcttaagatgaacagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccgaa 17278193  T
Q  230 aataaaca 237  Q
    ||||||||    
T  17278194 aataaaca 17278201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 16180489 - 16180554
Alignment:
Q  130 caaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaa 196  Q
    |||||||||||||| || ||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  16180489 caaattttattaaa-aatcagatctctgctcaagacgaacaaagatcggtgaaacagataatacaaa 16180554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 13423816 - 13423719
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaac 222  Q
    |||| ||||||||||| ||| |  || || || ||||||||||||| |||||  ||||||||||||||||| | ||| ||| ||||||||||| ||||    
T  13423816 aacagcaaattttatttaaccattaggtccctcctcaagacgaacagagacctttgaaactgagaatacaatctaaaggcgtcgtatataggcggaac 13423719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 16180675 - 16180715
Alignment:
Q  257 gacaacagccaccaaaatacacatcaccacctaaaacagac 297  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  16180675 gacaacatccaccaaaataaacatcaccacctaaaacagac 16180715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 5607704 - 5607775
Alignment:
Q  227 gaaaataaacaccttaaaaacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagact 298  Q
    ||||||||||| ||||||||||||||| |  |||||| |||| | |||||| || |||| ||||||||||||    
T  5607704 gaaaataaacatcttaaaaacacccctgaaaacaacacccactataatacaaattaccatctaaaacagact 5607775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 125 - 359
Target Start/End: Original strand, 1286 - 1519
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaaccc 224  Q
    |||||||||||||||||| ||| |||||| |||||||| |||||||      ||||||  | ||| || |||||||| ||| |||||||||||||||| |    
T  1286 aacaacaaattttattaagcaaccagatccctgctcaaaacgaaca------ggtgaa--taagagtataaacaaaaggcgccgtatataggcagaacac 1377  T
Q  225 ccg-aaaataaacacc-ttaaaaacacccctaaggacaac---agccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactg 319  Q
    ||| |||||||||||| | |||||||||||||||||||||   | |||| ||||||||| |||||||||||||| ||||  | || |  ||| |||||||    
T  1378 ccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccacaaaaatacacgtcaccacctaaaactgactcctacacgagaacaaccactg 1477  T
Q  320 ttaaaaccatatcca--accacccatcgtcactactcacccc 359  Q
    | ||||| |||||||  ||||| | ||||||||||| |||||    
T  1478 taaaaacgatatccaacaccacacgtcgtcactactgacccc 1519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 41915 - 42006
Alignment:
Q  270 aaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaa 361  Q
    ||||||||||||||||||||||||| | |  |||  |||||||||| || | ||||| ||||||||||||||||||||||||||| ||||||    
T  41915 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaaccacccatcgtcactactcgccccaa 42006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 41797 - 41867
Alignment:
Q  125 aacaacaaattttattaaacaaacagatctctgctcaagacgaacaaagaccggtgaaactgagaatacaaa 196  Q
    |||||||||||||||| ||||| || ||||||| |||||||||| | || ||||||||| ||||||||||||    
T  41797 aacaacaaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaa 41867  T

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Target: scaffold0200 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 19687 - 19596
Alignment:
Q  270 aaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaa 361  Q
    ||||||||||||||||||||||||| |||  |||    |||||||| || | ||||| |||||||||||| |||||||||||||| ||||||    
T  19687 aaaatacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatccaaccacacatcgtcactactcgccccaa 19596  T

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Target: scaffold1613 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 361
Target Start/End: Original strand, 782 - 898
Alignment:
Q  245 aacacccctaaggacaacagccaccaaaatacacatcaccacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc--aaccaccca 342  Q
    ||||||| | |||||||||  |||||||||| ||||||||||||||||||||||  |||| || || || |||||  ||||| ||||||  |||||| ||    
T  782 aacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcacgg-aatgatcactg-gaaaacgatatccataaccactca 879  T
Q  343 tcgtcactactcaccccaa 361  Q
    ||||||||||||| |||||    
T  880 tcgtcactactcatcccaa 898  T

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Target: scaffold1613; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 654 - 742
Alignment:
Q  157 gctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaagcggcgtatataggcagaacccccgaaaataaacaccttaaaa 245  Q
    |||||||||||||||||| | ||||  | |||||||||||| |||  || |||||||| |  |||| |||||||||||||||| |||||    
T  654 gctcaagacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 742  T

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