View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19763_low_7 (Length: 479)
Name: NF19763_low_7
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19763_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 479
Target Start/End: Complemental strand, 47910179 - 47909701
Alignment:
| Q |
14 |
tttttctcattcttccgttttgg-attaaataatgaattacttacccactattaaaaaaggacatcctttnnnnnnnnggacacacttgctagaccaaaa |
112 |
Q |
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| T |
47910179 |
tttttctcattcttctgtttttgtattaaataatgaattatttacccactattaaaaaaggacatccttttaaaaaaaggacacacttgctagaccaaaa |
47910080 |
T |
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| Q |
113 |
aataatgacatgtttggacttcggccctcttttgtatagaaaaggacaatgagtttcataaatgaatttgtctttagta---------gaaattattttt |
203 |
Q |
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| T |
47910079 |
tataatgacatgtttggacttcgaccctcttttgtataaaaaaggacaatgagtttcataaatgaatttgttcgtactaaatacactagaaattattttt |
47909980 |
T |
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| Q |
204 |
acataaatgttaattagtatgaaagattgaatcatggaacatttataaatggtgaattaacgagtttagcatcacctttgtcggaaatagctgatggtat |
303 |
Q |
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| T |
47909979 |
acataaatgttaattagtatgaaagattgaatcacggaacatttataaatggtgaattaacgagtttagcatcacctttatcggatatagctgatggtat |
47909880 |
T |
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| Q |
304 |
aatgatttatttttatgtaaatgacaaatgtta---gttagcttaattttttctcattcgtccaggtttgaacaacgagactcgatagagtttcattctt |
400 |
Q |
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| T |
47909879 |
aatgatttatttttatgtaaatgacaaatgttagttgttagcttaattttttctcattggtccaggtttgaacgacgagactcgatagagtttcattctt |
47909780 |
T |
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| Q |
401 |
ggttcattagtggcaagtaatctagtgataacttgcaagagggcattgagtttcattcttggttcattgattttctttt |
479 |
Q |
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| T |
47909779 |
ggttcattagtggcaagtaatctagtgataacttgcaagagggcattgagtttcattcttggttcattgattttctttt |
47909701 |
T |
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