View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19763_low_8 (Length: 465)
Name: NF19763_low_8
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19763_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Complemental strand, 32427531 - 32427087
Alignment:
| Q |
13 |
aatatatagttgagttattac----ggccacgttgtattagttccatcgatatatccctaatgacattgcgaccacatcggttgtgtttgtccgtaatat |
108 |
Q |
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| T |
32427531 |
aatatatagttgagttattacttacggccacgttgtattagttccatcgatatatccctaatgacattgcgaccacatcggtcgtgtttgtccgtaatat |
32427432 |
T |
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| Q |
109 |
caatattagatgtatcaacttcacttcaaaaacaagtataagctataaagtagagagattttgatgtttaattacttacctcccatctccatggatcaaa |
208 |
Q |
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| T |
32427431 |
caatattagatgtatcaacttcacttcaaaaacaagtataagctataaagtagagagattttgatgtttaattacttacctcccatctccatggatcaaa |
32427332 |
T |
|
| Q |
209 |
ctctaaaggtttttcatagttcgtgccatctaaatgaacggatgtaagagatgctacaacacaccaatccttaggaattaggtaccctac------nnnn |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32427331 |
ctctaaaggtttttcatagttcgtgccatctaaatgaacggatgtaagagatgctacaacacaccaatccttaggaattaggtaccctacaaaaaaaata |
32427232 |
T |
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| Q |
303 |
nnnnnnntagtgaaatcacatcatgtatttttgtgtatatgcttaaatgtaggtccaatacaaataactcctccataaactaacctttaatatctacatc |
402 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32427231 |
aaaaaattagtgaaaccacatcatgtatttttgtgtatatgcttaaatgtaggtccaatacaaataattcctccataaactaacctttaatatctacatc |
32427132 |
T |
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| Q |
403 |
ttttatagcttttctccaaatggcattgacaatatttgccattct |
447 |
Q |
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| T |
32427131 |
ttttatagcttttctccaaatggcattgacaatatttgccattct |
32427087 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 8157714 - 8157759
Alignment:
| Q |
184 |
ttacctcccatctccatggatcaaactctaaaggtttttcatagtt |
229 |
Q |
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| T |
8157714 |
ttacctcccatctccatggatcaaacttataagggttttcatagtt |
8157759 |
T |
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