View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19763_low_9 (Length: 427)
Name: NF19763_low_9
Description: NF19763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19763_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 35097771 - 35098168
Alignment:
| Q |
17 |
aatgcaaattctgtgaaatggttagctaattaagttgcagttatatatactttaattttcattcagcaaccatacttcaaaaatttaaacattaattaat |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
35097771 |
aatgcaaattctgtgaaatggttagctaattatgttgcaattatatatactttaattttcattcaacaaccatacttcaaaaatttaaacattaattagt |
35097870 |
T |
|
| Q |
117 |
caccactttgtatatacaggaatcagtgaataattcattagtgaacctgaagacatatccgtatgttgatagagaaataaggaacaagaacttagctttg |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
35097871 |
caccactttgtatatacaggaatcagtgaataactcattagtgaacctgaagacatatccatatgttgatagagaaataaggaacaagaacttagctctg |
35097970 |
T |
|
| Q |
217 |
ctgggaggttactatgattttgtgagtggagaattcaagctttggaagtataagaatcatgtcactgaacccgttaccatccctctaaaaggccttgaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35097971 |
ttgggaggttactatgattttgtgagtggagaattcaagctttggaagtataagaatcatgtcactgaacctgttaccatccctctaaaaggccttgaca |
35098070 |
T |
|
| Q |
317 |
tgactatctaaatcctcaaggaatcaagctttgaaccactatctcaactcttaagtgaccagttattttatactatgtacttttgttttcggttgttc |
414 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35098071 |
tgaccatctaaatcctcaaggaatgaagctttgaaccactatctcaactctcaagtgactagttattttatactatgtacttttgttttcggttgttc |
35098168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 116 - 400
Target Start/End: Original strand, 35103635 - 35103919
Alignment:
| Q |
116 |
tcaccactttgtatatacaggaatcagtgaataattcattagtgaacctgaagacatatccgtatgttgatagagaaataaggaacaagaacttagcttt |
215 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |
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| T |
35103635 |
tcaccactttatatataaaggaatcagtgaataattcattagtgaacctgaagacatatctatatgttgatagagaagtaaggaacaagaacttagcact |
35103734 |
T |
|
| Q |
216 |
gctgggaggttactatgattttgtgagtggagaattcaagctttggaagtataagaatcatgtcactgaacccgttaccat-ccctctaaaaggccttga |
314 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||| |||| || ||||||||||| |||||| |
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| T |
35103735 |
attgggaggttactatgattttgtgaatggagaattcaagctctggaagtataagacccatgtcactaaacccattacaatcccctctaaaagaccttga |
35103834 |
T |
|
| Q |
315 |
catgactatctaaatcctcaaggaatcaagctttgaaccactatctcaactcttaagtgaccagttattttatactatgtactttt |
400 |
Q |
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||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |||| || ||||||||||| |
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| T |
35103835 |
catgactgtcaaaatcctcaaggaatcaagctttgagccactatctcaactctcaagtgactagttctttt-tattatgtactttt |
35103919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 35110871 - 35111137
Alignment:
| Q |
23 |
aattctgtgaaatggttagctaattaagttgcagttatatatactttaattttcattcagcaaccatacttcaaaaatttaaacattaattaatcaccac |
122 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||||||||| || || |||||||| | |||| |
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|
| T |
35110871 |
aattttgtgaaatggttagctaattaagttgcaagtgtat----tttaatttccattcagcaaccatacttcaaaatttcaattattaattagttaccat |
35110966 |
T |
|
| Q |
123 |
tttgtatatacaggaatcagtgaataattcattagtgaacctgaagacatatccgtatgttgatagagaaataaggaacaagaacttagctttgctggga |
222 |
Q |
| |
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||| ||||| |||||||||||||||| |||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| | |||| |
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| T |
35110967 |
tttatatatgtaggaatcagtgaataactcattagtgaaccttcagacatatccatatgttgatgcagaaataaggaacaagaacttagcactattgggg |
35111066 |
T |
|
| Q |
223 |
ggttactatgattttgtgagtggagaattcaagctttggaagtataagaatcatgtcactgaacccgttac |
293 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| | ||||||||| |||| |
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|
| T |
35111067 |
ggttactatgactttgtgagtggagaattcaagttttggaagtataagactcatattactgaacccattac |
35111137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 35103506 - 35103615
Alignment:
| Q |
17 |
aatgcaaattctgtgaaatggttagctaattaagttgcagttatatatac-tttaattttcattcagcaaccatacttcaaaaatttaaacattaattaa |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| || |||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||| || |
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| T |
35103506 |
aatgcaaattttgtgaaatggttagctaataaagtttcaattatatatacttttatttttcattcagcaaccatacttcaaatatttaaatattaactag |
35103605 |
T |
|
| Q |
116 |
tcaccacttt |
125 |
Q |
| |
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|||||||||| |
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| T |
35103606 |
tcaccacttt |
35103615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 11682506 - 11682166
Alignment:
| Q |
17 |
aatgcaaattctgtgaaatggttagctaattaagttgcagttatatatactttaattttcattcagcaaccatac----ttcaaaaatttaaacattaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||| | |
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|
| T |
11682506 |
aatgcaaattctgtgaaatggttagctaattaagttgcaattatatatgctttaattttcattcagcaaccatacatacttcaaaaatttaaatattatt |
11682407 |
T |
|
| Q |
113 |
taatcaccactttgtatatacaggaatcagtgaataattcattagtgaacctgaagacatatccgtatgttgatagagaaataaggaacaagaacttagc |
212 |
Q |
| |
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| |||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
11682406 |
tcgtcaccactttatatatacaggaa----------------------acctgaagacatatccatatgttgatagataaataaggaacaagaacttagc |
11682329 |
T |
|
| Q |
213 |
tttgctgggaggttactatgattttgtgagtggagaattcaagctttggaagtataagaatcatgtcactgaacccgttaccatccctctaaaaggcctt |
312 |
Q |
| |
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| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
11682328 |
actactgggaggttactatgattttgtgaatggagaatccaagccgtggaagtataagactcatgtcactaaacccgttaccatccctctaaaaggcctt |
11682229 |
T |
|
| Q |
313 |
gacatgactatctaaatcctcaaggaatcaagctttgaaccactatctcaactcttaagtgac |
375 |
Q |
| |
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|||||||||||||||||||||||||| || | ||||||||||||||||||| ||| ||||||| |
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|
| T |
11682228 |
gacatgactatctaaatcctcaaggattcgatctttgaaccactatctcaattctcaagtgac |
11682166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 22311544 - 22311601
Alignment:
| Q |
16 |
aaatgcaaattctgtgaaatggttagctaattaagttgcagttatatatactttaatt |
73 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| | |||||||| | |||||| |
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|
| T |
22311544 |
aaatgcaaattctgtgaaatagttggctaattaagttgtaattatatatgccttaatt |
22311601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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