View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_high_11 (Length: 325)
Name: NF19764_high_11
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 35342684 - 35342969
Alignment:
| Q |
1 |
caaattttaaaaaccagttctctcatgtcttacatgaaagaatgcctccactatctaaacaattttataagaaaaaattgcatactattatttatctaca |
100 |
Q |
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| T |
35342684 |
caaattttaaaaaccagttctctcatgtcttacatgaaagaatgcctccactatctaaacaattttataagaaaaaattgcatactattatttatctaca |
35342783 |
T |
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| Q |
101 |
catttaatatagtgtaaaccatcttttttagtacatgtacaatcaaatgttatgcttatggttgattatgcaattctcatagattgcaattaggaaaaag |
200 |
Q |
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| T |
35342784 |
catttaatatagtgtaaaccatcttttttagtacatgtacaatcaaatgttatgcttatggttgattatgcaattctcatagattgcaattaggaaaaag |
35342883 |
T |
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| Q |
201 |
caaaataagcagttatgaacaaactttcactggttgagtacacataggagaaaagataaataaccttataaggcttgtaaaacaaataaa |
290 |
Q |
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| T |
35342884 |
caaaataagcagttatgaaccaactttcac----tgagtatacataggagaaaagataaataaccttattagacttgtaaaacaaataaa |
35342969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 35357182 - 35357091
Alignment:
| Q |
147 |
atgttatgcttatggttgattatgcaattctcatagattgcaattaggaaaaagcaaaataagcagttatgaacaaactttcactggttgagta |
240 |
Q |
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| T |
35357182 |
atgttatgcttattgttgattatgccattctgatagattgctacta--aaagagcaaaataagcagttatgaactaactgtcacgggttgagta |
35357091 |
T |
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