View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_high_16 (Length: 246)
Name: NF19764_high_16
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 30534868 - 30534750
Alignment:
| Q |
18 |
aaatgcatgcaaatatcaccacgacaagaaatcataatgaaacctctttttctatggttatcatcagatgcaatcagaccaagtgacttgctggctagga |
117 |
Q |
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| T |
30534868 |
aaatgcatgctaatatcaccacgacaagaaatcataatgaaacctctttttctatggttatcatcagatgcaatcagaccaagtgacttgctggctagga |
30534769 |
T |
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| Q |
118 |
gggtttcttgaaacgtatg |
136 |
Q |
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| T |
30534768 |
gggtttcttgaaacgtatg |
30534750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 30534753 - 30534684
Alignment:
| Q |
160 |
tatgaagaatgataccgcataatttaatcatgaacaatattagaaggcaaaatcaagttttaaatatcat |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30534753 |
tatgaagaatgataccgcataatttaatcatgaacaatattagaaggcacaatcaagttttaaatatcat |
30534684 |
T |
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