View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_high_4 (Length: 521)
Name: NF19764_high_4
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_high_4 |
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| [»] scaffold0251 (1 HSPs) |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 30 - 502
Target Start/End: Complemental strand, 37808043 - 37807569
Alignment:
| Q |
30 |
aaatatcattattattgtgttgatatatacgtacgtacctattacccaatttttcatgaagtttgatgatagtctcttcttcttcatgactaaagctccc |
129 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37808043 |
aaatatcattattattgtgttgatacatacgtacgtacctattacccaatttttcatgaagtttgatgatagtctcttcttcttcatgactaaagctccc |
37807944 |
T |
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| Q |
130 |
tcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacctttcaagacctgcaaacaaattaagtactgaattccaagat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37807943 |
tcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacctttcaagacctgcaaacaaattaagtactgaattccaagat |
37807844 |
T |
|
| Q |
230 |
atatagcacaaaaactaaaagaaatacaacacacataaactattaactgtaataacttttctatacctgcaaatttaggtaattgtcgccaattccaaca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37807843 |
atatagcacaaaaactaaaagaaatacaacacacataaactattaactgtaataacttttctatacctgcaaatttaggtaattgtcgccaattccaaca |
37807744 |
T |
|
| Q |
330 |
gccatacctagttacataagcaatcaactttttgtcttcctcgggtgtccatgtgcctttccttagtccatttttgtcacaataaggggttctcaccata |
429 |
Q |
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| T |
37807743 |
gccatacctagttacataagcaatcaactttttgtcttcctcgggtgtccatgtgcctttccttagtccatttttgtcacaataaggggttctcaccata |
37807644 |
T |
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| Q |
430 |
ttctctat--agtctggttggtaatagcttgtcttactcctaccaattcttagtatgagtgccgttagatctata |
502 |
Q |
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| T |
37807643 |
ttctctatagagtctggttggtaatagcttgtcttactcctaccaattcttagtatgagtgccgttagatctata |
37807569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 37789346 - 37789204
Alignment:
| Q |
65 |
tacctattacccaatttttcatgaagtttgatgatagtctcttcttcttcatgactaaagctccctcttttgatatctggccttagatagttcaaccacc |
164 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||| |||| ||| | ||| |||||||||||| |||||||||||||||||||| ||||| |
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| T |
37789346 |
tacctattacccagtttttcatgaagtttgatgataagctcttcctcttgttgattgaagttccctcttttgacatctggccttagatagttcatccacc |
37789247 |
T |
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| Q |
165 |
ttagtctacaactcttcccacacctttcaagacctgcaaacaa |
207 |
Q |
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| T |
37789246 |
ttagtctacaactcttaccacacctttcaagccctgaaaacaa |
37789204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 291 - 428
Target Start/End: Complemental strand, 37788817 - 37788683
Alignment:
| Q |
291 |
tatacctgcaaatttaggtaattgtcgccaattccaacagccatacctagttacataagcaatcaactttttgtcttcctcgggtgtccatgtgcctttc |
390 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
37788817 |
tatacctgcaaatctaggtagttgtcgccaattccaacagccatacctagtaacataagcaatcaactttttgtcttcctcatgtgtccatgaacctttt |
37788718 |
T |
|
| Q |
391 |
cttagtccatttttgtcacaataaggggttctcaccat |
428 |
Q |
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|| | |||||| ||||||| |||||||||||||||| |
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| T |
37788717 |
ctcaatccattattgtcac---aaggggttctcaccat |
37788683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 9952 - 9870
Alignment:
| Q |
107 |
tcttcttcatgactaaagctccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacct |
189 |
Q |
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| T |
9952 |
tcttcttcttgagtaaagtttcctcttttgatattaggccttagataattcaaccacctcaatctacaactcttcccacacct |
9870 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 262026 - 262106
Alignment:
| Q |
120 |
taaagctccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacctttcaagacctg |
200 |
Q |
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||||| |||||||| |||||| ||||||||||| |||| |||||| | |||||||||||||||||||||| |||||||| |
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| T |
262026 |
taaagttccctcttctgatattaggccttagataattcagccacctcaatctacaactcttcccacaccttgaaagacctg |
262106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 237133 - 237226
Alignment:
| Q |
107 |
tcttcttcatgactaaagctccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacctttcaagacctg |
200 |
Q |
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|||||||| ||| | ||| | ||||||||||||| || |||| ||| |||| |||||| | |||||||||||||||||||||| |||||||| |
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| T |
237133 |
tcttcttcttgagtgaagtttcctcttttgatattaggtcttaaataattcagccacctcaatctacaactcttcccacaccttgaaagacctg |
237226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 41544340 - 41544258
Alignment:
| Q |
126 |
tccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacct-ttcaagacctgcaaacaaa |
208 |
Q |
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||||||| ||||||| || || |||||||||||||| ||||| || |||||||| |||||||| ||||| ||||||||||||| |
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| T |
41544340 |
tccctctcttgatattgggtctaagatagttcaaccatcttagcctgcaactctttccacacctattcaa-acctgcaaacaaa |
41544258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 34357760 - 34357708
Alignment:
| Q |
134 |
ttgatatctggccttagatagttcaaccaccttagtctacaactcttcccaca |
186 |
Q |
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||||||| ||||||| |||||||||||| ||||| | ||||||||||||||| |
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| T |
34357760 |
ttgatattaggccttaaatagttcaaccatcttagacgacaactcttcccaca |
34357708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 4610890 - 4610946
Alignment:
| Q |
133 |
tttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacct |
189 |
Q |
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|||||| |||||||| ||||| |||| ||||||||| | ||||||||||||||||| |
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| T |
4610890 |
tttgatgtctggcctcagataattcagccaccttagacggcaactcttcccacacct |
4610946 |
T |
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