View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_high_6 (Length: 372)
Name: NF19764_high_6
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 132 - 341
Target Start/End: Complemental strand, 56283629 - 56283425
Alignment:
| Q |
132 |
aatcataattattatggcttgcagtgattttgaaagtcatttacatatttaaaatcgtttgtaatgtggtgacaatattgttgccagttttgttaattaa |
231 |
Q |
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| T |
56283629 |
aatcatacttattatggcttgcagtgattttgaaagtcatttacatatttttaatcgtttgtcatgtggtgacaatattgttgccacttttgttaattaa |
56283530 |
T |
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| Q |
232 |
ttttacaataaccaagaccccatgcccactttggtgtttaaccactccacaaacacaatccacgtactggatggaagcatgtggaattcaacagagaagt |
331 |
Q |
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| T |
56283529 |
ttttacaataaccaagaccccatgcccactttggtgtttaaccac-----aaccacaatccacgtactggatggaagcatgtggaattcaacagagaagt |
56283435 |
T |
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| Q |
332 |
ctggtaacaa |
341 |
Q |
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| T |
56283434 |
ctggtcacaa |
56283425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 56283822 - 56283669
Alignment:
| Q |
1 |
tattctaatttctcacaccagtta----ctaatgcaaactagtttttcacttgagcaaaactattgattagaattctt----------------ttaata |
80 |
Q |
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| T |
56283822 |
tattctaatttctcacaccagttagttactaatgcaaactagtttttcacttgagcaaaactattgattagaattcttttaaatgattcatcttttaata |
56283723 |
T |
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| Q |
81 |
aagttcattaaccatgcttgagtaaaatcaattagttaatgattaataatgaat |
134 |
Q |
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| T |
56283722 |
aagttcattaagcatgcttgagtaaaatcaattagttaatgattaataatgaat |
56283669 |
T |
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