View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_low_12 (Length: 364)
Name: NF19764_low_12
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 26411621 - 26411346
Alignment:
| Q |
1 |
cgaactcaaccaatgtcttcgtaaggtgaattgttacggtgccaaa---tatccgctacttcgtcattacttacgcatcttcgctagaggttatcacctt |
97 |
Q |
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| T |
26411621 |
cgaactcaatcaatgtcttcctaaggtgaattgttacagtgccaaagaatatctgctacttcttcattacttacgcatcttcgctagaggttatcacctc |
26411522 |
T |
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| Q |
98 |
caattttgaagatgtatgagtcatcccagacatagtgtgcagcttcccagaggaatttatgtctttgttcccaattgtaaacttctggaatctcacctgc |
197 |
Q |
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| T |
26411521 |
caattttgaagaggtatgagtcatcccggacatagtgtgcagcttcccggaggaatttatgtctttgttcccgattgtaatcttttggaatctcacctgc |
26411422 |
T |
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| Q |
198 |
tgctttgaagtttgtcatatcagtaaaccatggtctttctctaat-gcgaacaacttttcatctggaaattcttct |
272 |
Q |
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| T |
26411421 |
tactttgtagtttgtcatgtcagcaaatcatggtgtttttctcatggtgaacaatttttcatctggaaattcttct |
26411346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 26406556 - 26406461
Alignment:
| Q |
267 |
tcttcttatatttctttttccttgttagtggcttcgttattcgccaatcttgacaaatgatcaggaactaaattttttgttccttttttgcctttg |
362 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
26406556 |
tcttcttatatttctttttctttgttagtggcttcgttattcgccaatcttgacaaatgatcaggaactaaattctttgttccttttttgtctttg |
26406461 |
T |
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