View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_low_13 (Length: 358)
Name: NF19764_low_13
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 5070830 - 5071156
Alignment:
| Q |
16 |
atcaactaacatgtccctaaactatggaaatgcatcaatttaatttttaaactatcatgaaaatcaatcaattttgttaactgaatgactaattaattgg |
115 |
Q |
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| T |
5070830 |
atcaactaacatgtccctaaactatggaaatgcatcaatttagtttttaaactatcatgaaaatcaatcaattttgttaactgaatgactaattaattgg |
5070929 |
T |
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| Q |
116 |
atgaaagaataggtttgagtgatagatagtttaaaaattaagtaatctcaacagctgaaaaattaagttttgcttgaataaacaacttaattaaaaattt |
215 |
Q |
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| T |
5070930 |
atgaaagaataggtttgagtgatagatagtttaaacattaagtaacctcaacagctgaaaaattaagttttgcttgaataaacaacttaattaaaaattt |
5071029 |
T |
|
| Q |
216 |
atcataccggtgtttatgtgttttgtttagttctaggtgtattttca--nnnnnnnnatcttccatcgagctcttttatgttttactactttatgaagta |
313 |
Q |
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| T |
5071030 |
atcatacctgtgttta--tgttttgtttagttctaggtgtattttcattttttttttatcttccatcgagctcttttatgttttactactttgtgaagta |
5071127 |
T |
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| Q |
314 |
cctctgatactctttgaggatcaagcata |
342 |
Q |
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| T |
5071128 |
cctttgatactctttgaggatcaagcata |
5071156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 14198403 - 14198351
Alignment:
| Q |
43 |
aaatgcatcaatttaatttttaaactatcatgaaaatcaatcaattttgttaa |
95 |
Q |
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|||| ||| |||||| ||| |||||||| ||||||| |||||||||||||||| |
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| T |
14198403 |
aaatacattaatttagtttctaaactattatgaaaaacaatcaattttgttaa |
14198351 |
T |
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