View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_low_15 (Length: 334)
Name: NF19764_low_15
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 49704341 - 49704217
Alignment:
| Q |
16 |
caaaggctaagtcaaatattgactaaagactaagtcaaataaactactagtatctaataccttcaccaaacgttcatagagtgccctctcttattccatt |
115 |
Q |
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| T |
49704341 |
caaaggctaagtcaaatattgactaaagactaagtcaaataaactactagtatctaataccttcaccaaacgttcatagagtgccctctcttattccatt |
49704242 |
T |
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| Q |
116 |
cacccaaggttcactcttctatttc |
140 |
Q |
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| T |
49704241 |
cacccaaggttcactcttctatttc |
49704217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 49704141 - 49704044
Alignment:
| Q |
221 |
ctatttgtaaacatttgattgcagattttggtatttttctcaattctcgccaacacgtcaaacaatgagagaaggattatcagctttgaagaaggatg |
318 |
Q |
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| T |
49704141 |
ctatttgtaaacatttgattgcagattttggtatttttctcaattctcgccaacatgtcaaacagtgagagaaggattatcagctttgaagaaggatg |
49704044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 50239690 - 50239728
Alignment:
| Q |
244 |
gattttggtatttttctcaattctcgccaacacgtcaaa |
282 |
Q |
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| T |
50239690 |
gattttgatatttttctcaattctcgccaacatgtcaaa |
50239728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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