View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_low_23 (Length: 246)
Name: NF19764_low_23
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42802655 - 42802419
Alignment:
| Q |
1 |
aaactgaaaagatatatattcttcaattgagagctctgattagactattcttaatgccgacctcattttgagacatttgagataattactacttacatag |
100 |
Q |
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| T |
42802655 |
aaactgaaaagatacatattcttcaattgagagctctgattagactactcttaatgccaacctcattttgggacatttgagataattactacttacatgg |
42802556 |
T |
|
| Q |
101 |
acatagacagacctaataataaaaaggaaggggaggggagggggtggattaagcatttccaaaagaggatgggagtgagttactgctgtcttcatttgtg |
200 |
Q |
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| T |
42802555 |
acatagacagacctaataataaaaaggaaggggaggggagggggtggattaagcatttccaaaagaggatgggagtgagttactgctgtcttcatttgtg |
42802456 |
T |
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| Q |
201 |
attgaggaggaggatgcatcagtattcttcttcttct |
237 |
Q |
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| T |
42802455 |
atcgaggaggaggatgcatcagtattgttcttcttct |
42802419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 25514885 - 25514990
Alignment:
| Q |
9 |
aagatatatattcttcaattgagagctctgattagactat-----tcttaatgccgacctcattttgagacatttgagataattactacttacatagaca |
103 |
Q |
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| T |
25514885 |
aagatacatactcttcaattgagagctcggattagactagactactcttaatgccgacctcatcttgggacatttgagataattactacttacatagaca |
25514984 |
T |
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| Q |
104 |
tagaca |
109 |
Q |
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|||||| |
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| T |
25514985 |
tagaca |
25514990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 25520477 - 25520303
Alignment:
| Q |
21 |
cttcaattgagagctctgattagactat-----tcttaatgccgacctcattttgagacatttgagataattactacttaca------tagacatagaca |
109 |
Q |
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| T |
25520477 |
cttcaattgagagctcagattagactagattactcttaatgccgacctcattttaggacatttgagataattactacttacatagaaatagacatagaca |
25520378 |
T |
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| Q |
110 |
gacctaataataaaaagg---------aaggggaggggagggggtggattaagcatttccaaaagaggatgggag |
175 |
Q |
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| T |
25520377 |
gacctaataataaaaagggagactccaaaacgaaggggatggggtggattaaacatttccaagagaggatgggag |
25520303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 49169 - 49093
Alignment:
| Q |
29 |
gagagctctgattagactattcttaatgccgacctcattttgagacatttgagataattactacttacatagacata |
105 |
Q |
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| T |
49169 |
gagagctcagattagactactcttaatgccgacctcattttgggacatttaagataattactacttacataaacata |
49093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 49035 - 48972
Alignment:
| Q |
134 |
aggggagggggtggattaagcatttccaaaagaggatgggagtgagttactgctgtcttcattt |
197 |
Q |
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| T |
49035 |
aggggagggggtgtattaagcatttccaaaagaggatgggagtgacttactgctgtcttcattt |
48972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 25851705 - 25851757
Alignment:
| Q |
145 |
tggattaagcatttccaaaagaggatgggagtgagttactgctgtcttcattt |
197 |
Q |
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| T |
25851705 |
tggattaagcatttccaaaagaggaagggagtgagttactgatgtcttcattt |
25851757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 25851772 - 25851820
Alignment:
| Q |
191 |
ttcatttgtgattgaggaggaggatgcatcagtattcttcttcttctct |
239 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
25851772 |
ttcatttgtgatttaggaggaggatgcatcagtattgttcttcttctct |
25851820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 25851651 - 25851612
Alignment:
| Q |
154 |
catttccaaaagaggatgggagtgagttactgctgtcttc |
193 |
Q |
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| T |
25851651 |
catttccaaaagaggatgggagtgagttactgctgtcttc |
25851612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 25851593 - 25851547
Alignment:
| Q |
191 |
ttcatttgtgattgaggaggaggatgcatcagtattcttcttcttct |
237 |
Q |
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||||| ||||||||||||||| ||||||||| |||| |||||||||| |
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| T |
25851593 |
ttcatctgtgattgaggaggatgatgcatcaatattgttcttcttct |
25851547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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